GenArk taxonomy - Vertebrate

View list of species as table for Vertebrate

337 accessions

Vertebrata

Gnathostomata

Chelonoidis nigra species complex

Chelonoidis abingdonii

•Chelonoidis abingdonii(Abingdon island giant tortoise (Lonesome George 2018))(info)GCF_003597395.1

•Chelonoidis abingdonii(Abingdon island giant tortoise (Lonesome George 2025))(info)GCF_003597395.2

Gopherus

Gopherus evgoodei

•Gopherus evgoodei(Goodes thornscrub tortoise (Sinaloan 2019))(info)GCF_007399415.2

•Gopherus evgoodei(Goodes thornscrub tortoise (Sinaloan alternate hap 2019))(info)GCA_007399395.1

Gopherus flavomarginatus

•Gopherus flavomarginatus(Mexican gopher tortoise (WGS:JAMKFC01 2022))(info)GCF_025201925.1

•Gopherus flavomarginatus(Mexican gopher tortoise (WGS:JAMKFD01 2022))(info)GCA_025201965.1

Emydidae

Malaclemys

Malaclemys terrapin

Malaclemys terrapin pileata

•Malaclemys terrapin pileata(diamondback terrapin (hap1 2023 refseq))(info)GCF_027887155.1

•Malaclemys terrapin pileata(diamondback terrapin (hap2 rMalTer1 2023))(info)GCA_027887205.1

Emys

Emys orbicularis

•Emys orbicularis(European pond turtle (hap1 2023 genbank))(info)GCA_028017835.1

•Emys orbicularis(European pond turtle (hap1 2023 refseq))(info)GCF_028017835.1

•Emys orbicularis(European pond turtle (hap2 rEmyOrb1 2023))(info)GCA_028017845.1

Actinemys

Actinemys marmorata

•Actinemys marmorata(Northwestern pond turtle (WTP2003 alternate hap 2022))(info)GCA_022086895.1

•Actinemys marmorata(Northwestern pond turtle (WTP2003 primary hap 2022))(info)GCA_022086475.1

Actinemys pallida

•Actinemys pallida(Southwestern pond turtle (HBS135687 alternate hap 2022))(info)GCA_023634275.1

•Actinemys pallida(Southwestern pond turtle (HBS135687 primary hap 2022))(info)GCA_023634205.1

Trachemys

Trachemys scripta

•Trachemys scripta elegans(red-eared slider turtle)(info)GCF_013100865.1

Terrapene

•Terrapene triunguis(three-toed box turtle)(info)GCF_002925995.2

Chrysemys

Chrysemys picta

Chrysemys picta bellii

•Chrysemys picta bellii(western painted turtle (hap1 R12L10 2024))(info)GCA_035221575.1

•Chrysemys picta bellii(western painted turtle (hap2 R12L10 2024))(info)GCA_035221595.1

•Chrysemys picta bellii(western painted turtle (R12L10 2023 refseq))(info)GCF_011386835.1

•Chrysemys picta bellii(western painted turtle (v5 RCT428 2020))(info)GCF_000241765.5

•Pangshura tecta(Indian roofed turtle (hap1 2024))(info)GCA_045781095.1

•Pangshura tecta(Indian roofed turtle (hap2 2024))(info)GCA_045781085.1

Geoemydinae

Mauremys

•Mauremys reevesii(Reeves's turtle)(info)GCF_016161935.1

•Mauremys mutica(yellowpond turtle (Southern MM-2020 2021))(info)GCF_020497125.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap1 2025))(info)GCA_965140285.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap2 2025 refseq))(info)GCF_965140265.1

Lepidochelys olivacea

•Lepidochelys olivacea(Pacific ridley (hap1 2025))(info)GCA_965140295.1

•Lepidochelys olivacea(Pacific ridley (hap2 2025))(info)GCA_965140255.1

Natator

Natator depressus

•Natator depressus(flatback sea turtle (hap1 2025 refseq))(info)GCF_965152275.1

•Natator depressus(flatback sea turtle (hap2 2025))(info)GCA_965152195.1

Chelonia

Chelonia mydas

•Chelonia mydas(green sea turtle (v2 alternate hap 2021))(info)GCA_015220195.2

•Chelonia mydas(green sea turtle (v2 primary hap 2021))(info)GCF_015237465.2

Eretmochelys

Eretmochelys imbricata

•Eretmochelys imbricata(hawksbill sea turtle (B2_1 2023))(info)GCA_030012505.1

•Eretmochelys imbricata(hawksbill sea turtle (hap1 2025))(info)GCA_965152235.1

•Eretmochelys imbricata(hawksbill sea turtle (hap2 2025))(info)GCA_965152285.1

Caretta

Caretta caretta

•Caretta caretta(loggerhead turtle (SJ_126:Eziel1 2022))(info)GCF_023653815.1

•Caretta caretta(loggerhead turtle (hap1 2025 genbank))(info)GCA_965140235.1

•Caretta caretta(loggerhead turtle (hap1 2025 refseq))(info)GCF_965140235.1

•Caretta caretta(loggerhead turtle (hap2 2025))(info)GCA_965140275.1

Dermochelyidae

Dermochelys

Dermochelys coriacea

•Dermochelys coriacea(leatherback sea turtle (v2 alternate hap 2020))(info)GCA_009762595.2

•Dermochelys coriacea(leatherback sea turtle (v4 primary hap 2021 refseq))(info)GCF_009764565.3

Chelydroidea

Kinosternidae

Sternotherus

•Sternotherus odoratus(eastern musk turtle (primary hap 2023))(info)GCA_032164245.1

Chelydridae

Macrochelys

Macrochelys suwanniensis

•Macrochelys suwanniensis(Suwannee snapping turtle (hap1 2023))(info)GCA_033296515.1

•Macrochelys suwanniensis(Suwannee snapping turtle (hap2 2023))(info)GCA_033349115.1

•Pelodiscus sinensis(Chinese soft-shelled turtle (Daiwa-1 2012))(info)GCF_000230535.1

•Pelodiscus sinensis(Chinese soft-shelled turtle (JC-2024 2025))(info)GCF_049634645.1

Carettochelyidae

Carettochelys

Carettochelys insculpta

•Carettochelys insculpta(pitted-shelled turtle (YL-2023 2023 genbank))(info)GCA_033958435.1

•Carettochelys insculpta(pitted-shelled turtle (YL-2023 2023 refseq))(info)GCF_033958435.1

Pleurodira

Chelidae

Myuchelys

•Myuchelys georgesi(Bellinger river turtle (v2 BRST_UC0152H_USYD 2025))(info)GCA_040894355.2

Emydura

Emydura macquarii

•Emydura macquarii macquarii(Murray river turtle (Brisbane River MOO-44397 2024))(info)GCF_026122565.2

Podocnemididae

Podocnemis

Podocnemis expansa

•Podocnemis expansa(giant South American river turtle (hap1 2024))(info)GCA_045364785.1

•Podocnemis expansa(giant South American river turtle (hap2 2024))(info)GCA_045364815.1

Alligator mississippiensis

•Alligator mississippiensis(American alligator (2023 refseq))(info)GCF_030867095.1

•Alligator mississippiensis(American alligator (KSC_2009_1 2016))(info)GCF_000281125.3

•Alligator sinensis(Chinese alligator)(info)GCF_000455745.1

Longirostres

Crocodylidae

Crocodylus

•Crocodylus porosus(Australian saltwater crocodile)(info)GCF_001723895.1

•Gavialis gangeticus(gharial (Ggan-Ray 2016))(info)GCF_001723915.1

•Gavialis gangeticus(gharial (hap1 2023))(info)GCA_030020385.1

•Gavialis gangeticus(gharial (hap2 2023))(info)GCA_030020295.1

•Vipera berus(adder (hap1 2024))(info)GCA_964194415.1

•Vipera berus(adder (hap2 2024))(info)GCA_964194405.1

Vipera latastei

•Vipera latastei(Lataste's viper (alternate hap 2022))(info)GCA_024294605.1

•Vipera latastei(Lataste's viper (primary hap 2022))(info)GCA_024294585.1

Vipera ursinii

•Vipera ursinii(meadow viper (alternate hap 2022))(info)GCA_947247025.1

•Vipera ursinii(meadow viper (primary hap 2022))(info)GCA_947247035.1

Crotalinae

Protobothrops

•Protobothrops mucrosquamatus(brown spotted pit viper)(info)GCF_001527695.2

Crotalus

Crotalus helleri

•Crotalus helleri(Southern Pacific rattlesnake (HBS135844 alternate hap 2022))(info)GCA_024509165.1

•Crotalus helleri(Southern Pacific rattlesnake (HBS135844 primary hap 2022))(info)GCA_024509115.1

•Crotalus tigris(tiger rattlesnake)(info)GCF_016545835.1

Colubridae

Ahaetuliinae

Ahaetulla

•Ahaetulla prasina(Asian vine snake (Xishuangbanna 2023))(info)GCF_028640845.1

Colubrinae

Arizona

Arizona elegans

•Arizona elegans(California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022))(info)GCA_022578425.1

•Arizona elegans(California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022))(info)GCA_022577455.1

Pantherophis

Pantherophis guttatus

•Pantherophis guttatus(corn snake (Columbia U 2023))(info)GCF_029531705.1

•Pantherophis guttatus(corn snake (EG266 2020))(info)GCF_001185365.1

Pituophis

Pituophis catenifer

Pituophis catenifer annectens

•Pituophis catenifer annectens(gopher snake (HBS135680 alternate hap 2023 refseq))(info)GCF_029215685.1

•Pituophis catenifer annectens(gopher snake (HBS135680 primary hap 2023))(info)GCA_029215655.1

Natricinae

Thamnophis

Thamnophis sirtalis

•Thamnophis sirtalis(common garter snake)(info)GCF_001077635.1

Thamnophis sirtalis fitchi

•Thamnophis sirtalis fitchi(valley gartersnake (HBS 135685 alternate hap 2023))(info)GCA_029207655.1

•Thamnophis sirtalis fitchi(valley gartersnake (HBS 135685 primary hap 2023))(info)GCA_029207665.1

Thamnophis elegans

•Thamnophis elegans(western terrestrial garter snake (alternate hap 2019))(info)GCA_009769695.1

•Thamnophis elegans(western terrestrial garter snake (primary hap 2019))(info)GCF_009769535.1

Natrix

Natrix helvetica

•Natrix helvetica(snake N.helvetica (rNatHel1.hap1.1 2024))(info)GCA_964273705.1

•Natrix helvetica(snake N.helvetica (rNatHel1.hap2.1 2024))(info)GCA_964273795.1

Lamprophiidae

Lamprophiinae

Boaedon

•Boaedon fuliginosus(brown house snake (FMNH 251328 2023))(info)GCA_027560395.1

Elapidae

Hydrophiinae

Pseudonaja

•Pseudonaja textilis(eastern brown snake)(info)GCF_900518735.1

Notechis

•Notechis scutatus(mainland tiger snake)(info)GCF_900518725.1

Hydrophis

•Hydrophis curtus(Shaw's sea snake (ss_UAE728 2024))(info)GCA_037043045.1

Elapinae

Naja

•Naja naja(Indian cobra (NN01 2019))(info)GCA_009733165.1

Bungarinae

Bungarus

•Bungarus multicinctus(many-banded krait (BM01 2022))(info)GCA_023653725.1

Dipsadidae

Diadophis

Diadophis punctatus

Diadophis punctatus similis

•Diadophis punctatus similis(Ringneck snake (HBS135679 primary hap 2022))(info)GCA_023053685.1

•Diadophis punctatus similis(San Diego ringneck snake (HBS135679 alternate hap 2022))(info)GCA_023053665.1

Erythrolamprus

Erythrolamprus reginae

•Erythrolamprus reginae(royal ground snake (hap1 2023 refseq))(info)GCF_031021105.1

•Erythrolamprus reginae(royal ground snake (hap2 2023))(info)GCA_031021085.1

•Erythrolamprus reginae(royal ground snake (hap3 2023))(info)GCA_031001685.1

Henophidia

Pythonidae

Python

•Python bivittatus(Burmese python)(info)GCF_000186305.1

Liasis

Liasis olivaceus

•Liasis olivaceus(olive python (hap1 2023))(info)GCA_030867105.1

•Liasis olivaceus(olive python (hap2 2023))(info)GCA_030867085.1

•Charina bottae(Northern rubber boa (HBS 135849 alternate hap 2022))(info)GCA_023362785.1

•Charina bottae(Northern rubber boa (HBS 135849 primary hap 2022))(info)GCA_023362775.1

Boinae

Candoia

Candoia aspera

•Candoia aspera(Papuan ground boa (hap1 2024))(info)GCA_035125265.1

•Candoia aspera(Papuan ground boa (hap2 2024 genbank))(info)GCA_035149785.1

•Candoia aspera(Papuan ground boa (hap2 2024 refseq))(info)GCF_035149785.1

Phrynosoma blainvillii

•Phrynosoma blainvillii(Blainville's horned lizard (alternate hap 2022))(info)GCA_026167975.1

•Phrynosoma blainvillii(Blainville's horned lizard (primary hap 2022))(info)GCA_026167985.1

Sceloporus

•Sceloporus undulatus(fence lizard)(info)GCF_019175285.1

Sceloporus occidentalis

•Sceloporus occidentalis(western fence lizard (IW3139 2022))(info)GCA_023333635.1

•Sceloporus occidentalis(western fence lizard (IW3139 primary hap 2022))(info)GCA_023333645.1

Dactyloidae

Anolis

Anolis sagrei

•Anolis sagrei(brown anole (maternal hap 2024 genbank))(info)GCA_037176765.1

•Anolis sagrei(Brown anole (maternal hap 2024 refseq))(info)GCF_037176765.1

•Anolis sagrei(Brown anole (rAnoSag1 2024))(info)GCA_037176775.1

•Anolis sagrei ordinatus(brown anole (Geneva1000 2022 refseq))(info)GCF_025583915.1

Anolis carolinensis

•Anolis carolinensis(green anole (JA03-04 2024))(info)GCF_035594765.1

•Anolis carolinensis(green anole (v1 2011))(info)GCF_000090745.1

•Anolis carolinensis(green anole (v2 2010))(info)GCF_000090745.2

•Pogona vitticeps(central bearded dragon (2017))(info)GCF_900067755.1

•Pogona vitticeps(central bearded dragon (2025))(info)GCF_047335585.1

•Pogona vitticeps(central bearded dragon (Pit_001003342236 2025))(info)GCA_051106095.1

Chamaeleonidae

Bradypodion

Bradypodion pumilum

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province JTBG20231 2024))(info)GCA_035047305.1

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province hap1 2025))(info)GCA_047715975.1

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province hap2 2025))(info)GCA_047715955.1

•Bradypodion ventrale(Southern dwarf chameleon (Gauteng JTBG20232 2024))(info)GCA_035047345.1

Furcifer

•Furcifer pardalis(lizards F.pardalis (Fpa_1 2023))(info)GCA_030440675.1

•Cyclura pinguis(Grand Cayman blue iguana (hap1 2023))(info)GCA_030412105.1

•Cyclura pinguis(Grand Cayman blue iguana (hap2 2023))(info)GCA_030412085.1

•Shinisaurus crocodilurus(Chinese crocodile lizard (Guangxi GXDGS128 2021))(info)GCA_021292165.1

Varanoidea

Varanidae

Varanus

•Varanus komodoensis(Komodo dragon (SLA01 2019))(info)GCF_004798865.1

•Anniella stebbinsi(San Diegan legless lizard (HBS135921 alternate hap 2023))(info)GCA_029215795.1

•Anniella stebbinsi(San Diegan legless lizard (HBS135921 primary hap 2023))(info)GCA_029215775.1

Anguidae

Elgaria

Elgaria multicarinata

Elgaria multicarinata webbii

•Elgaria multicarinata webbii(San Diego alligator lizard (HBS135686 alternate hap 2022))(info)GCA_023053675.1

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.0 HBS135686 primary hap 2022))(info)GCA_023053635.1

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 genbank))(info)GCA_023053635.2

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 refseq))(info)GCF_023053635.1

•Podarcis raffonei(Aeolian wall lizard (La Canna islet alternate hap 2022))(info)GCA_027172095.1

•Podarcis raffonei(Aeolian wall lizard (La Canna islet primary hap 2022 refseq))(info)GCF_027172205.1

Podarcis liolepis

•Podarcis liolepis(Columbretes wall lizard (hap1.1 2025))(info)GCA_965112155.1

•Podarcis liolepis(Columbretes wall lizard (hap2.1 2025))(info)GCA_965178375.1

Podarcis muralis

•Podarcis muralis(common wall lizard (hap1 2024))(info)GCA_964188315.1

•Podarcis muralis(common wall lizard (hap2 2024))(info)GCA_964188365.1

•Podarcis muralis(common wall lizard (yellow 2019))(info)GCF_004329235.1

Podarcis cretensis

•Podarcis cretensis(Cretan wall lizard (alternate hap 2023))(info)GCA_951804955.1

•Podarcis cretensis(Cretan wall lizard (primary hap 2023))(info)GCA_951804945.1

Podarcis filfolensis

•Podarcis filfolensis(Filfola wall lizard (rPodFil1.hap1.1 2024))(info)GCA_964270895.1

•Podarcis filfolensis(Filfola wall lizard (rPodFil1.hap2.1 2024))(info)GCA_964270875.1

Podarcis siculus

•Podarcis siculus(Italian wall lizard (rPodSic1.hap1.1 2024))(info)GCA_964188175.1

•Podarcis siculus(Italian wall lizard (rPodSic1.hap2.1 2024))(info)GCA_964188395.1

•Podarcis lilfordi(Lilford's wall lizard (2023))(info)GCA_947686815.1

Podarcis bocagei

•Podarcis bocagei(lizards P.bocagei (rPodBoc1.hap1.1 2024))(info)GCA_964188305.1

•Podarcis bocagei(lizards P.bocagei (rPodBoc1.hap2.1 2024))(info)GCA_964188325.1

Podarcis erhardii

•Podarcis erhardii(lizards P.erhardii (rPodErh1.hap1.1 2024))(info)GCA_964252035.1

•Podarcis erhardii(lizards P.erhardii (rPodErh1.hap2.1 2024))(info)GCA_964251985.1

Podarcis melisellensis

•Podarcis melisellensis(lizards P.melisellensis (rPodMel1.hap1.1 2024))(info)GCA_964234715.1

•Podarcis melisellensis(lizards P.melisellensis (rPodMel1.hap2.1 2024))(info)GCA_964234825.1

Podarcis pityusensis

•Podarcis pityusensis(lizards P.pityusensis (rPodPit1.hap1.2 2024))(info)GCA_964106645.2

•Podarcis pityusensis(lizards P.pityusensis (rPodPit1.hap2.2 2024))(info)GCA_964106635.2

Podarcis vaucheri

•Podarcis vaucheri(lizards P.vaucheri (hap1.1 2025))(info)GCA_965113315.1

•Podarcis vaucheri(lizards P.vaucheri (hap2.1 2025))(info)GCA_965113305.1

Podarcis gaigeae

•Podarcis gaigeae(Skyros wall lizard (rPodGai1.hap2.1 2024))(info)GCA_964106785.1

•Podarcis gaigeae(Skyros wall lizard (v1 hap1 2024))(info)GCA_964106915.1

•Podarcis gaigeae(Skyros wall lizard (v2 hap1 2024))(info)GCA_964106915.2

Podarcis tiliguerta

•Podarcis tiliguerta(Tyrrhenian wall lizard (hap1 2025))(info)GCA_965153285.1

•Podarcis tiliguerta(Tyrrhenian wall lizard (hap2 2025))(info)GCA_965153305.1

Zootoca

Zootoca vivipara

•Zootoca vivipara(common lizard Z.vivipara (primary hap 2023))(info)GCF_963506605.1

•Zootoca vivipara(common lizard Z.vivipara (hap1.1 2025))(info)GCA_965207765.1

•Zootoca vivipara(common lizard Z.vivipara (hap2.1 2025))(info)GCA_965208345.1

•Zootoca vivipara(viviparous/common lizard)(info)GCF_011800845.1

Lacerta

Lacerta agilis

•Lacerta agilis(sand lizard (alternate hap 2019))(info)GCA_009819545.1

•Lacerta agilis(sand lizard (primary hap 2019))(info)GCF_009819535.1

•Rhineura floridana(Florida worm lizard (hap1 rRhiFlo1 2023))(info)GCA_030035715.1

•Rhineura floridana(Florida worm lizard (hap2 2023 genbank))(info)GCA_030035675.1

•Rhineura floridana(Florida worm lizard (hap2 2023 refseq))(info)GCF_030035675.1

Teiioidea

Teiidae

Aspidoscelis

Aspidoscelis tigris group

•Aspidoscelis marmoratus(marbled whiptail (SIMRID8450 2020))(info)GCA_014337955.1

Aspidoscelis tigris

Aspidoscelis tigris stejnegeri

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (alternate hap HBS 135688 2022))(info)GCA_023333555.1

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (v1.1 HBS 135688 primary hap 2025))(info)GCA_023333525.2

•Tiliqua scincoides(common blue-tongued skink (hap1 2024))(info)GCA_035046495.1

•Tiliqua scincoides(common blue-tongued skink (hap2 2024))(info)GCA_035046505.1

•Tiliqua scincoides(lizards T.scincoides (rTilSci1hap2 2024))(info)GCF_035046505.1

Scincinae

Plestiodon

Plestiodon gilberti

Plestiodon gilberti rubricaudatus

•Plestiodon gilberti rubricaudatus(western red-tailed skink (HBS 135693 alternate hap 2022))(info)GCA_026170595.1

•Plestiodon gilberti rubricaudatus(western red-tailed skink (HBS 135693 primary hap 2022))(info)GCA_026170395.1

•Hemicordylus capensis(graceful crag lizard (Gifberg primary hap 2022))(info)GCF_027244095.1

•Correlophus ciliatus(crested gecko (US Hobby MAA-2024a 2024))(info)GCA_040207535.1

Sphaerodactylidae

Euleptes

Euleptes europaea

•Euleptes europaea(European leaf-toed gecko (hap1 2023))(info)GCF_029931775.1

•Euleptes europaea(European leaf-toed gecko (hap2 2023))(info)GCA_029931755.1

Sphaerodactylus

•Sphaerodactylus townsendi(Townsend's dwarf sphaero (gecko TG3544 2022))(info)GCF_021028975.2

Eublepharidae

Eublepharinae

Eublepharis

•Eublepharis macularius(leopard gecko (TG4126 2023))(info)GCF_028583425.1

Gekkonidae

Gekkoninae

Heteronotia

•Heteronotia binoei(prickly gecko (False Entrance Well CCM8104 2023))(info)GCF_032191835.1

Gekko

•Gekko japonicus(Schlegel's Japanese gecko)(info)GCF_001447785.1

Dibamidae

Dibamus

Dibamus cf. smithi

•Dibamus cf. smithi(lizards D.cf. smithi (hap1 2024))(info)GCA_046126795.1

•Dibamus cf. smithi(lizards D.cf. smithi (hap2 2024))(info)GCA_046126825.1

Pyxicephalus adspersus

•Pyxicephalus adspersus(African bullfrog (1538 2019))(info)GCA_004786255.1

•Pyxicephalus adspersus(African bullfrog (2023))(info)GCF_032062135.1

Ranidae

Aquarana

Aquarana catesbeiana

•Aquarana catesbeiana(American bullfrog (2022-GZ 2024))(info)GCF_042186555.1

•Aquarana catesbeiana(American bullfrog (primary hap 2024))(info)GCA_037953035.1

Rana

Rana temporaria

•Rana temporaria(common frog (alternate hap 2021))(info)GCA_905171725.1

•Rana temporaria(European common frog (2021))(info)GCF_905171775.1

Pelophylax

Pelophylax lessonae

•Pelophylax lessonae(pool frog (hap1 2025))(info)GCA_965119305.1

•Pelophylax lessonae(pool frog (hap2 2025))(info)GCA_965119315.1

Mantellidae

Mantellinae

Mantella

madagascariensis group

Mantella aurantiaca

•Mantella aurantiaca(golden mantella (hap1 2025))(info)GCA_048565345.1

•Mantella aurantiaca(golden mantella (hap2 2025))(info)GCA_048565335.1

Dicroglossidae

Dicroglossinae

Nanorana

•Nanorana parkeri(High Himalaya frog)(info)GCF_000935625.1

Hyloidea

Bufonidae

Bufo

Bufo gargarizans species complex

•Bufo gargarizans(Asiatic toad (SCDJY-AF-19 2020))(info)GCF_014858855.1

Bufo bufo

•Bufo bufo(common toad (alternate hap 2021))(info)GCA_905171715.1

•Bufo bufo(common toad (primary hap 2021))(info)GCF_905171765.1

Rhinodermatidae

Rhinoderma

•Rhinoderma darwinii(Darwin's frog (hap1 2025))(info)GCF_050947455.1

Dendrobatidae

Dendrobatinae

Dendrobates

•Dendrobates tinctorius(dyeing poison frog (UK_male_01 2024))(info)GCF_039654945.1

Phyllobates

•Phyllobates terribilis(golden poison dart frog (yellow primary hap 2024))(info)GCF_046119375.1

Ranitomeya

Ranitomeya imitator

•Ranitomeya imitator(mimic poison frog (primary hap 2023 genbank))(info)GCA_032444005.1

•Ranitomeya imitator(mimic poison frog (primary hap 2023 refseq))(info)GCF_032444005.1

Aromobatidae

Anomaloglossinae

Anomaloglossus

Anomaloglossus baeobatrachus

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap1 2025 genbank))(info)GCA_048569485.1

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap1 2025 refseq))(info)GCF_048569485.1

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap2 2025))(info)GCA_048569465.1

Dendropsophus ebraccatus

•Dendropsophus ebraccatus(hourglass treefrog (maternal 2023 genbank))(info)GCA_027789725.1

•Dendropsophus ebraccatus(hourglass treefrog (paternal 2023 refseq))(info)GCF_027789765.1

Hylini

Hyla

Hyla sarda

•Hyla sarda(Sardinian treefrog (hap1 2023 refseq))(info)GCF_029499605.1

•Hyla sarda(Sardinian treefrog (hap2 2023))(info)GCA_029493135.1

Eleutherodactylidae

Eleutherodactylinae

Eleutherodactylus

Eleutherodactylus coqui

•Eleutherodactylus coqui(Puerto Rican coqui (hap1 2024 refseq))(info)GCF_035609145.1

•Eleutherodactylus coqui(Puerto Rican coqui (hap2 2024))(info)GCA_035609135.1

•Leptodactylus fuscus(rufous frog (hap1 2023))(info)GCA_031893025.1

•Leptodactylus fuscus(rufous frog (hap2 2023 genbank))(info)GCA_031893055.1

•Leptodactylus fuscus(rufous frog (hap2 2023 refseq))(info)GCF_031893055.1

Leiuperinae

Engystomops

Engystomops pustulosus

•Engystomops pustulosus(Tungara frog (aEngPut4 maternal hap 2024 refseq))(info)GCF_040894005.1

•Engystomops pustulosus(Tungara frog (aEngPut4 paternal hap 2024))(info)GCA_040894015.1

Pseudophryne corroboree

•Pseudophryne corroboree(corroboree frog (hap1 2023))(info)GCA_028390055.1

•Pseudophryne corroboree(corroboree frog (hap2 2023 refseq))(info)GCF_028390025.1

Limnodynastidae

Mixophyes

Mixophyes fleayi

•Mixophyes fleayi(Fleay's barred frog (hap1 2024 genbank))(info)GCA_038048845.1

•Mixophyes fleayi(Fleay's barred frog (hap1 2024 refseq))(info)GCF_038048845.1

•Mixophyes fleayi(Fleay's barred frog (hap2 2024))(info)GCA_038048865.1

Gastrophryne carolinensis

•Gastrophryne carolinensis(eastern narrow-mouthed toad (hap2 2023))(info)GCA_027917415.1

•Gastrophryne carolinensis(eastern narrow-mouthed toad (primary haplotype 2023))(info)GCA_027917425.1

Hyperoliidae

Hyperolius

Hyperolius riggenbachi

•Hyperolius riggenbachi(Riggenbach's reed frog (aHypRig1 alternate hap 2024))(info)GCA_040937895.1

•Hyperolius riggenbachi(Riggenbach's reed frog (aHypRig1 primary hap 2024))(info)GCF_040937935.1

•Xenopus laevis(African clawed frog (2021))(info)GCF_017654675.1

Xenopus petersii

•Xenopus petersii(Peter's clawed frog (aXenPet1 2024))(info)GCA_038501915.1

•Xenopus petersii(Peter's clawed frog (aXenPet1 2024))(info)GCA_038501925.1

Silurana

•Xenopus tropicalis(tropical clawed frog)(info)GCF_000004195.4

Rhinophrynidae

Rhinophrynus

Rhinophrynus dorsalis

•Rhinophrynus dorsalis(Mexican burrowing toad (hap1 2024))(info)GCA_037306005.1

•Rhinophrynus dorsalis(Mexican burrowing toad (hap2 2024))(info)GCA_037306015.1

•Pelobates fuscus(common spadefoot toad (primary hap 2024 genbank))(info)GCA_036172605.1

•Pelobates fuscus(common spadefoot toad (primary hap 2024 refseq))(info)GCF_036172605.1

Spea

Spea bombifrons

•Spea bombifrons(plains spadefoot toad (alternate hap 2022))(info)GCA_027382365.2

•Spea bombifrons(plains spadefoot toad (primary hap 2022))(info)GCF_027358695.1

Spea hammondii

•Spea hammondii(western spadefoot toad (hap1 HBS 135690 2023))(info)GCA_029215705.1

•Spea hammondii(western spadefoot toad (hap2 HBS 135690 2023))(info)GCA_029215755.1

Pelodytidae

Pelodytes

•Pelodytes ibericus(Iberian parsley frog (aPelIbe1 2024))(info)GCA_036172795.1

Bombinatoridae

Bombina

Bombina bombina

•Bombina bombina(fire-bellied toad (alternate hap 2023))(info)GCA_027579415.1

•Bombina bombina(fire-bellied toad (primary hap 2023 refseq))(info)GCF_027579735.1

Bombina variegata

•Bombina variegata(yellow-bellied toad (maternal hap 2024))(info)GCA_964205305.1

•Bombina variegata(yellow-bellied toad (paternal hap 2024))(info)GCA_964205295.1

•Discoglossus pictus(painted frog (alternate hap 2022))(info)GCA_027410455.1

•Discoglossus pictus(painted frog (primary hap 2022))(info)GCA_027410445.1

Ascaphidae

Ascaphus

Ascaphus truei

•Ascaphus truei(tailed frog (A.truei hap1 2024 genbank))(info)GCA_040206685.1

•Ascaphus truei(tailed frog (A.truei hap1 2024 refseq))(info)GCF_040206685.1

•Ascaphus truei(tailed frog (A.truei hap2 2024))(info)GCA_040206675.1

•Ambystoma mexicanum(axolotl (DD151 2021))(info)GCA_002915635.3

•Ambystoma mexicanum(axolotl (Mex_15411 2024))(info)GCF_040938575.1

Salamandridae

Pleurodelinae

Lissotriton

•Lissotriton vulgaris(common newt (primary hap 2024))(info)GCA_964263255.1

•Lissotriton helveticus(palmate newt (primary hap 2024))(info)GCA_964261635.1

Pleurodeles

Pleurodeles waltl

•Pleurodeles waltl(Iberian ribbed newt (20211129_DDA 2022 genbank))(info)GCA_026652325.1

•Pleurodeles waltl(Iberian ribbed newt (hap1 20211129_DDA 2024 refseq))(info)GCF_031143425.1

Triturus

•Triturus cristatus(warty newt (primary hap 2024))(info)GCA_964204655.1

Gymnophiona

Dermophiidae

Geotrypetes

Geotrypetes seraphini

•Geotrypetes seraphini(Gaboon caecilian (alternate hap 2019))(info)GCA_902459495.1

•Geotrypetes seraphini(Gaboon caecilian (v1.2 2021 genbank))(info)GCA_902459505.2

Siphonopidae

Microcaecilia

Microcaecilia unicolor

•Microcaecilia unicolor(tiny Cayenne caecilian (v2 2021))(info)GCA_901765095.2

•Microcaecilia unicolor(tiny Cayenne caecilian (alternate hap 2019))(info)GCA_901765105.1

Rhinatrematidae

Rhinatrema

Rhinatrema bivittatum

•Rhinatrema bivittatum(two-lined caecilian (alternate hap 2019))(info)GCA_901001175.1

•Rhinatrema bivittatum(two-lined caecilian (v1.2 2021 genbank))(info)GCA_901001135.2

•Lepidosiren paradoxa(South American lungfish (Aquarium Glaser DD20211129a alternate hap 2024))(info)GCA_040438655.1

Protopteridae

Protopterus

Protopterus annectens

•Protopterus annectens(West African lungfish (Aquariam Glaser DD20220218a primary hap 2024))(info)GCA_040939525.1

•Protopterus annectens(West African lungfish (FY-2018-M 2021))(info)GCF_019279795.1

•Latimeria chalumnae(coelacanth)(info)GCF_000225785.1

•Latimeria chalumnae(coelacanth (fLatCha1 primary hap 2024))(info)GCF_037176945.1

•Anguilla rostrata(American eel (EN2019 2024))(info)GCF_018555375.3

Anguilla anguilla

•Anguilla anguilla(European eel (alternate hap 2020))(info)GCA_013347865.1

•Anguilla anguilla(European eel (primary hap 2020 refseq))(info)GCF_013347855.1

•Anguilla japonica(Japanese eel (BU-2020EF 2022))(info)GCA_025169545.1

Elopiformes

Megalopidae

Megalops

•Megalops cyprinoides(Indo-Pacific tarpon (alternate hap 2020))(info)GCA_013368575.1

•Lepisosteus oculatus(spotted gar)(info)GCF_000242695.1

•Lepisosteus oculatus(spotted gar (fLepOcu1hap1 2024))(info)GCA_040954845.1

•Lepisosteus oculatus(spotted gar (fLepOcu1hap2 2024))(info)GCF_040954835.1

•Huso huso(beluga (Lower Danube River Hh-F2 2024))(info)GCA_036884735.1

Acipenserinae

Acipenserini

Acipenser

•Acipenser ruthenus(sterlet (v2 Gen_M01 2020))(info)GCF_010645085.2

•Polyodon spathula(Mississippi paddlefish)(info)GCF_017654505.1

•Polypterus senegalus(gray bichir)(info)GCF_016835505.1

Erpetoichthys

•Erpetoichthys calabaricus(reedfish (v3 alternate hap 2021))(info)GCA_900700845.3

•Hypanus sabinus(Atlantic stingray (hap1 2023 refseq))(info)GCF_030144855.1

•Hypanus sabinus(Atlantic stingray (hap2 2023))(info)GCA_030144785.1

Hemitrygon

•Hemitrygon akajei(red stingray (2025))(info)GCF_048418815.1

•Mobula birostris(giant manta (hap1 2023 refseq))(info)GCF_030028105.1

•Mobula birostris(giant manta (hap2 2023))(info)GCA_030035685.1

•Mobula hypostoma(lesser devil ray (2024))(info)GCF_963921235.1

Rajiformes

Rajidae

Raja

•Raja brachyura(blonde ray (primary hap 2023))(info)GCA_963514005.1

Leucoraja

•Leucoraja erinaceus(little skate (New England 2023))(info)GCF_028641065.1

Amblyraja

Amblyraja radiata

•Amblyraja radiata(thorny skate (alternate hap CabotCenter1 2020))(info)GCA_010909745.1

•Amblyraja radiata(thorny skate (v1.1 primary hap CabotCenter1 2020))(info)GCF_010909765.2

•Narcine bancroftii(Caribbean electric ray (hap1 2024 refseq))(info)GCF_036971445.1

•Narcine bancroftii(Caribbean electric ray (hap2 2024))(info)GCA_036971175.1

•Pristis pectinata(smalltooth sawfish (alternate hap 2019))(info)GCA_009764485.1

•Pristis pectinata(smalltooth sawfish (v2.1 primary hap 2019 refseq))(info)GCF_009764475.1

•Cetorhinus maximus(basking shark (sCetMax3.hap1.1 2024))(info)GCA_964194155.1

•Cetorhinus maximus(basking shark (sCetMax3.hap2.1 2024))(info)GCA_964194165.1

Lamninae

Carcharodon

Carcharodon carcharias

•Carcharodon carcharias(great white shark (alternate hap 2021))(info)GCA_017639455.1

•Carcharodon carcharias(great white shark (primary hap 2021))(info)GCF_017639515.1

Orectolobiformes

Hemiscylliidae

Chiloscyllium

•Chiloscyllium punctatum(brownbanded bambooshark (Juve2018m 2025))(info)GCF_047496795.1

•Chiloscyllium plagiosum(whitespotted bambooshark)(info)GCF_004010195.1

Hemiscyllium

Hemiscyllium ocellatum

•Hemiscyllium ocellatum(epaulette shark (alternate hap sHemOce1 2021))(info)GCA_020745765.1

•Hemiscyllium ocellatum(epaulette shark (primary hap 2021 refseq))(info)GCF_020745735.1

Rhincodontidae

Rhincodon

Rhincodon typus

•Rhincodon typus(whale shark (14 2022 Squalomix))(info)GCF_021869965.1

•Rhincodon typus(whale shark (Ralph 2017 Emory U))(info)GCF_001642345.1

Stegostomatidae

Stegostoma

Stegostoma tigrinum

•Stegostoma tigrinum(zebra shark (6-17 2022 Squalomix))(info)GCF_022316705.1

•Stegostoma tigrinum(zebra shark (hap1 2023 refseq))(info)GCF_030684315.1

•Stegostoma tigrinum(zebra shark (hap2 2023))(info)GCA_030684295.1

Carcharhiniformes

Scyliorhinidae

Scyliorhinus

•Scyliorhinus torazame(cloudy catshark (Kashiwa2021f 2025))(info)GCF_047496885.1

Scyliorhinus canicula

•Scyliorhinus canicula(smaller spotted catshark (alternate hap 2021))(info)GCA_902713625.2

•Scyliorhinus canicula(smaller spotted catshark (v1.2 primary hap 2021 genbank))(info)GCA_902713615.2

Triakidae

Mustelus

Mustelus asterias

•Mustelus asterias(starry smooth-hound (sMusAst1.hap1.1 2024))(info)GCA_964213995.1

•Mustelus asterias(starry smooth-hound (sMusAst1.hap2.1 2024))(info)GCA_964214025.1

Heterodontus francisci

•Heterodontus francisci(horn shark (hap1 2024))(info)GCA_036365525.1

•Heterodontus francisci(horn shark (hap2 2024))(info)GCA_036365495.1

•Heterodontus francisci(horn shark (sHetFra1hap1 2024))(info)GCF_036365525.1

Pristiophorus japonicus

•Pristiophorus japonicus(Japanese sawshark (hap1 2024 refseq))(info)GCF_044704955.1

•Pristiophorus japonicus(Japanese sawshark (hap2 2024))(info)GCA_044704965.1

•Heptranchias perlo(sharpnose sevengill shark (hap1 2024 genbank))(info)GCF_035084215.1

•Heptranchias perlo(sharpnose sevengill shark (hap1 2024 refseq))(info)GCA_035084215.1

•Heptranchias perlo(sharpnose sevengill shark (hap2 2024))(info)GCA_035084135.1

•Callorhinchus milii(elephant shark (2021))(info)GCF_018977255.1

Chimaeridae

Hydrolagus

Hydrolagus colliei

•Hydrolagus colliei(spotted ratfish (hap1 2024))(info)GCA_035084065.1

•Hydrolagus colliei(spotted ratfish (hap2 2024))(info)GCA_035084275.1

•Myxine glutinosa(Atlantic hagfish (MG_SS 2024))(info)GCF_040869285.1

•Myxine glutinosa(Atlantic hagfish (primary hap 2024))(info)GCA_964187855.1

•Lampetra fluviatilis(European river lamprey (primary hap 2024))(info)GCA_964198595.1

Lethenteron

•Lethenteron reissneri(Far Eastern brook lamprey (LAM-NWPU_2019-01 2020))(info)GCF_015708825.1

Entosphenus

•Entosphenus tridentatus(Pacific lamprey (Columbia River large-bodied, stream-maturing ecotype CRITFC18_GStd-0006 2020))(info)GCA_014621495.2

Petromyzon

Petromyzon marinus

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 alternate hap 2025))(info)GCA_048941845.1

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025 genbank))(info)GCA_048934315.1

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025 refseq))(info)GCF_048934315.1

•Petromyzon marinus(sea lamprey (alternate hap 2020))(info)GCA_010993595.1

•Petromyzon marinus(sea lamprey (primary hap 2020))(info)GCF_010993605.1