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381 accessions

Taxonomy:

root › cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Osteoglossocephalai › Clupeocephala › Euteleosteomorpha › Neoteleostei

Taxonomy information:

View on NCBI (taxonomy ID: 123365)

Ovalentaria incertae sedis

Embiotocidae

Embiotoca

Embiotoca jacksoni

•Embiotoca jacksoni(black perch (LCO1_2020_lvr alternate hap 2022))(info)GCA_022578405.1

•Embiotoca jacksoni(black perch (LCO1_2020_lvr primary hap 2022 genbank))(info)GCA_022577435.1

•Embiotoca jacksoni(black perch (LCO1_2020_lvr primary hap 2022 refseq))(info)GCF_022577435.1

Brachyistius

•Brachyistius frenatus(kelp perch (BFR_SWC_R1_liver_20210118 2023))(info)GCF_029030835.1

Ambassidae

Parambassis

Parambassis ranga

•Parambassis ranga(Indian glassy fish (v2 2020))(info)GCA_900634625.2

•Parambassis ranga(Indian glassy fish (alternate hap 2019))(info)GCA_900651595.1

•Parambassis ranga(Indian glassy fish (v1 2019))(info)GCF_900634625.1

Pomacentridae

Stegastes

•Stegastes partitus(bicolor damselfish)(info)GCF_000690725.1

Amphiprion

Amphiprion ocellaris

•Amphiprion ocellaris(clown anemonefish (DU_AmpOce 2017))(info)GCF_002776465.1

•Amphiprion ocellaris(clown anemonefish (Okinawa individual 3 2022))(info)GCF_022539595.1

Acanthochromis

Acanthochromis polyacanthus

•Acanthochromis polyacanthus(spiny chromis (Palm Island Apoly-LR-REF 2022))(info)GCF_021347895.1

•Acanthochromis polyacanthus(spiny chromis (Palm Islands 2017))(info)GCF_002109545.1

Archocentrus centrarchus

•Archocentrus centrarchus(flier cichlid (alternate hap MPI-CPG 2019))(info)GCA_007364235.1

•Archocentrus centrarchus(flier cichlid (MPI-CPG 2019 genbank))(info)GCA_007364275.2

•Archocentrus centrarchus(flier cichlid (MPI-CPG 2019 refseq))(info)GCF_007364275.1

Amphilophus

•Amphilophus citrinellus(Midas cichlid (2014))(info)GCA_000751415.1

Astatotilapia calliptera

•Astatotilapia calliptera(eastern happy (v3 2021))(info)GCA_900246225.5

•Astatotilapia calliptera(eastern happy (primary hap 2024))(info)GCA_964374335.1

•Astatotilapia calliptera(eastern happy (v2 2018))(info)GCF_900246225.1

Rhamphochromis

unclassified Rhamphochromis

•Rhamphochromis sp. 'chilingali'(Malawi cichlid R.sp.'chilingali' (2024))(info)GCA_963969265.1

Aulonocara

•Aulonocara stuartgranti(flavescent peacock cichlid (primary hap 2025))(info)GCA_965226115.1

Haplochromis

Haplochromis burtoni

•Haplochromis burtoni(Burton's mouthbrooder (Broad 2011))(info)GCF_000239415.1

•Haplochromis burtoni(Burton's mouthbrooder (NCSU 2021))(info)GCF_018398535.1

Pundamilia

•Pundamilia nyererei(P.nyererei 1_Seehausen)(info)GCF_000239375.1

Maylandia

Maylandia zebra complex

Maylandia zebra

•Maylandia zebra(zebra mbuna (Mazinzi reef 2018))(info)GCF_000238955.4

•Maylandia zebra(zebra mbuna (NMK-2024a 2024))(info)GCF_041146795.1

Oreochromini

Oreochromis

Oreochromis aureus

•Oreochromis aureus(blue tilapia (BGI-SZ))(info)GCF_005870065.1

•Oreochromis aureus(blue tilapia (Guangdong))(info)GCF_013358895.1

•Oreochromis niloticus(Nile tilapia)(info)GCF_001858045.2

Tropheini

Simochromis

•Simochromis diagramma(chichlid (S. diagramma))(info)GCF_900408965.1

Lamprologini

Neolamprologus

•Neolamprologus brichardi(lyretail cichlid)(info)GCF_000239395.1

Pelmatolapiini

Pelmatolapia

Pelmatolapia mariae

•Pelmatolapia mariae(spotted tilapia (v1 MD_Pm_ZW 2024))(info)GCF_036321145.1

•Pelmatolapia mariae(spotted tilapia (v2 MD_Pm_ZW 2024))(info)GCF_036321145.2

Pholidichthyidae

Pholidichthys

Pholidichthys leucotaenia

•Pholidichthys leucotaenia(convict blenny (fPhoLeu1 alternate hap 2021))(info)GCA_020510965.1

•Pholidichthys leucotaenia(convict blenny (primary hap 2021))(info)GCA_020510985.1

•Xenentodon cancila(freshwater garfish (fXenCan1 alternate hap 2020))(info)GCA_014839645.1

•Xenentodon cancila(freshwater garfish (primary hap 2020))(info)GCA_014839995.1

Cololabis

•Cololabis saira(Pacific saury (AMF1-May2022 2023))(info)GCF_033807715.1

•Oryzias melastigma(Indian medaka)(info)GCF_002922805.2

•Oryzias melastigma(Indian medaka)(info)GCF_002922805.1

•Oryzias latipes(Japanese medaka)(info)GCF_002234675.1

•Anableps anableps(largescale foureyes (primary hap 2020))(info)GCA_014839685.1

•Anableps anableps(largescale foureyes (fAnaAna1 alternate hap 2020))(info)GCA_014839705.1

Fundulidae

Fundulus

Fundulus diaphanus

•Fundulus diaphanus(banded killifish (hap2 2024))(info)GCA_037038625.1

•Fundulus diaphanus(banded killifish (hap1 2024))(info)GCA_037039145.1

Fundulus heteroclitus

•Fundulus heteroclitus(mummichog (Maine))(info)GCF_000826765.1

•Fundulus heteroclitus(mummichog (U. Missouri))(info)GCF_011125445.2

Goodeidae

Girardinichthys

Girardinichthys multiradiatus

•Girardinichthys multiradiatus(dark-edged splitfin (DD_20200921_A 2022 refseq))(info)GCF_021462225.1

•Girardinichthys multiradiatus(dark-edged splitfin (DD_20200921_A 2022 genbank))(info)GCA_021462225.2

Poeciliidae

Poeciliinae

Poecilia

•Poecilia formosa(Amazon molly)(info)GCF_000485575.1

•Poecilia reticulata(guppy)(info)GCF_000633615.1

•Poecilia latipinna(sailfin molly)(info)GCF_001443285.1

•Poecilia mexicana(shortfin molly)(info)GCF_001443325.1

Poeciliopsis

•Poeciliopsis prolifica(blackstripe livebearer (line A6 2022))(info)GCF_027474105.1

Xiphophorus

•Xiphophorus hellerii(green swordtail)(info)GCF_003331165.1

•Xiphophorus couchianus(Monterrey platyfish)(info)GCF_001444195.1

•Xiphophorus maculatus(southern platyfish)(info)GCF_002775205.1

Gambusia

•Gambusia affinis(western mosquitofish)(info)GCF_019740435.1

•Cyprinodon variegatus(sheepshead minnow)(info)GCF_000732505.1

•Cyprinodon tularosa(White Sands pupfish)(info)GCF_016077235.1

Aplocheiloidei

Rivulidae

Austrofundulus

•Austrofundulus limnaeus(annual killifish)(info)GCF_001266775.1

Kryptolebias

Kryptolebias marmoratus

•Kryptolebias marmoratus(mangrove rivulus)(info)GCF_001649575.2

•Kryptolebias marmoratus(mangrove rivulus)(info)GCF_001649575.1

Nematolebias

Nematolebias whitei

•Nematolebias whitei(Rio pearlfish (Nwh7 v2 2021))(info)GCF_014905685.2

•Nematolebias whitei(Rio pearlfish (Nwh7 v1 2020))(info)GCF_014905685.1

Nothobranchiidae

Nothobranchius

Nothobranchius furzeri

•Nothobranchius furzeri(turquoise killifish (GRZ 2015))(info)GCF_001465895.1

•Nothobranchius furzeri(turquoise killifish (GRZ-AD 2024))(info)GCF_043380555.1

•Nothobranchius furzeri(turquoise killifish (MZM-0403 2023))(info)GCF_027789165.1

Atheriniformes

Melanotaeniidae

Melanotaenia

Melanotaenia boesemani

•Melanotaenia boesemani(Boeseman's rainbowfish (fMelBoe1 alternate hap 2021))(info)GCA_017639755.1

•Melanotaenia boesemani(Boeseman's rainbowfish (primary hap 2021))(info)GCF_017639745.1

Atherinopsidae

Atherinopsinae

Odontesthes

Odontesthes bonariensis

•Odontesthes bonariensis(pejerrey (hap1 2023 genbank))(info)GCA_027942865.1

•Odontesthes bonariensis(pejerrey (fOdoBon6 haplotype 2 2023))(info)GCA_027942885.1

•Odontesthes bonariensis(pejerrey (hap1 2023 refseq))(info)GCF_027942865.1

Leuresthes

•Leuresthes tenuis(California grunion (hap1 2024))(info)GCF_036924035.1

Menidiinae

Menidia

Menidia menidia

•Menidia menidia(Atlantic silverside (fMenMen1 hap2 2025))(info)GCA_048544195.1

•Menidia menidia(Atlantic silverside (fMenMen1 hap1 2025))(info)GCA_048628825.1

Telmatherinidae

Telmatherina

Telmatherina bonti

•Telmatherina bonti(bonti-bonti (primary hap 2022))(info)GCA_933228915.1

•Telmatherina bonti(bonti-bonti (fTelBon1 alternate hap 2022))(info)GCA_933228925.1

•Cristiceps australis(crested weedfish (hap2 OG76 2025))(info)GCA_049082045.1

•Cristiceps australis(crested weedfish (hap1 OG76 2025))(info)GCA_049082185.1

•Salarias fasciatus(jewelled blenny (alternate hap 2019))(info)GCA_902148835.1

•Salarias fasciatus(jewelled blenny (2019))(info)GCF_902148845.1

Lipophrys

Lipophrys pholis

•Lipophrys pholis(shanny (primary hap 2023))(info)GCA_963383615.1

•Lipophrys pholis(shanny (alternate hap 2023))(info)GCA_963383635.1

Blenniinae

Blennius

•Blennius ocellaris(butterfly blenny (primary hap 2023))(info)GCA_963422515.1

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 genbank))(info)GCA_900634775.1

•Gouania willdenowi(blunt-snouted clingfish (v2 2020 genbank))(info)GCA_900634775.2

•Gouania willdenowi(blunt-snouted clingfish (alternate hap))(info)GCA_900650505.1

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 refseq))(info)GCF_900634775.1

•Chelon labrosus(thicklip grey mullet (primary hap 2023))(info)GCA_963514085.1

Mugil

•Mugil cephalus(flathead mullet)(info)GCF_022458985.1

Semicossyphus pulcher

•Semicossyphus pulcher(California sheephead (SPU_LCO1_2020_fin alternate hap 2022))(info)GCA_022749735.1

•Semicossyphus pulcher(California sheephead (SPU_LCO1_2020_fin primary hap 2022))(info)GCA_022749685.1

•Semicossyphus pulcher(bony fish S.pulcher (SPU_LCO1_2020_fin primary hap 2022))(info)GCF_022749685.1

Notolabrus

Notolabrus celidotus

•Notolabrus celidotus(New Zealand spotty (primary hap 2019 genbank))(info)GCA_009762535.1

•Notolabrus celidotus(New Zealand spotty (alternate hap 2019 genbank))(info)GCA_009762545.1

•Notolabrus celidotus(New Zealand spotty (primary hap refseq))(info)GCF_009762535.1

Tautogolabrus

Tautogolabrus adspersus

•Tautogolabrus adspersus(cunner (fTauAds1 alternate hap 2021))(info)GCA_020745675.1

•Tautogolabrus adspersus(cunner (primary hap 2021))(info)GCA_020745685.1

Choerodon

•Choerodon schoenleinii(blackspot tuskfish (SL-2024 2025))(info)GCA_047301625.1

Symphodus

•Symphodus melops(corkwing wrasse (primary hap 2022))(info)GCA_947650265.1

Labrus

Labrus bergylta

•Labrus bergylta(ballan wrasse (primary hap 2024 genbank))(info)GCA_963930695.1

•Labrus bergylta(ballan wrasse (primary hap 2024 refseq))(info)GCF_963930695.1

•Labrus bergylta(ballan wrasse (2016))(info)GCF_900080235.1

•Labrus mixtus(cuckoo wrasse (primary hap 2023))(info)GCF_963584025.1

Labroides

•Labroides dimidiatus(bluestreak cleaner wrasse (JK-2023 2023))(info)GCA_030710495.1

Cheilinus

•Cheilinus undulatus(humphead wrasse)(info)GCF_018320785.1

Halichoeres

•Halichoeres trimaculatus(threespot wrasse (MK-OKI-2021-1 2023))(info)GCF_033239565.1

Cebidichthys violaceus

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022))(info)GCA_023349535.1

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022))(info)GCA_023349555.1

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022))(info)GCF_023349555.1

•Lycodopsis pacificus(blackbelly eelpout (fLycPai1 haplotype 1 2023))(info)GCA_028021495.1

•Lycodopsis pacificus(blackbelly eelpout (fLycPai1 haplotype 2 2023))(info)GCA_028022725.1

Gymnelinae

Melanostigma

Melanostigma gelatinosum

•Melanostigma gelatinosum(limp eelpout (alternate hap 2023))(info)GCA_949748265.1

•Melanostigma gelatinosum(limp eelpout (primary hap 2023))(info)GCA_949748355.1

•Pholis gunnellus(rock gunnel (primary hap 2021))(info)GCA_910591455.2

•Pholis gunnellus(rock gunnel (alternate hap 2021))(info)GCA_910591705.2

Anarhichadidae

Anarhichas

•Anarhichas minor(spotted wolffish (MPS153535 2025))(info)GCF_050575085.1

Anarrhichthys

•Anarrhichthys ocellatus(wolf-eel)(info)GCF_004355925.1

•Clinocottus analis(woolly sculpin (alternate hap CAN_PGR_092001 2022))(info)GCA_023055415.1

•Clinocottus analis(woolly sculpin (CAN_PGR_092001 2022))(info)GCA_023055335.1

•Clinocottus analis(woolly sculpin (CAN_PGR_092001 primary hap 2022))(info)GCF_023055335.1

Taurulus

Taurulus bubalis

•Taurulus bubalis(longspined bullhead (fTauBub2.1 alternate hap 2021))(info)GCA_910589325.1

•Taurulus bubalis(longspined bullhead (.1 primary hap 2021))(info)GCA_910589615.1

•Cyclopterus lumpus(lumpfish (alternate hap 2019))(info)GCA_009769515.1

•Cyclopterus lumpus(lumpfish (primary hap 2019 genbank))(info)GCA_009769545.1

•Cyclopterus lumpus(lumpfish (primary hap v2.1 2023 genbank))(info)GCA_963457625.1

•Cyclopterus lumpus(lumpfish (v1 primary hap 2019 refseq))(info)GCF_009769545.1

Liparidae

Pseudoliparis

•Pseudoliparis swirei(Mariana snailfish (Mariana Trench HS2019 2023))(info)GCF_029220125.1

•Spinachia spinachia(sea stickleback (SK-2024b hap1 2025))(info)GCA_048126635.1

•Spinachia spinachia(sea stickleback (SK-2024b hap2 2025))(info)GCA_048127205.1

Pungitius

Pungitius pungitius

•Pungitius pungitius(ninespine stickleback (alternate hap 2023))(info)GCA_949316245.1

•Pungitius pungitius(ninespine stickleback (primary hap 2023 genbank))(info)GCA_949316345.1

•Pungitius pungitius(ninespine stickleback (primary hap 2023 refseq))(info)GCF_949316345.1

•Pungitius pungitius(ninespine stickleback (NSP_V7 2020))(info)GCF_902500615.1

Gasterosteus

Gasterosteus aculeatus

•Gasterosteus aculeatus(three-spined stickleback (hap2 2024))(info)GCA_964276385.1

•Gasterosteus aculeatus(three-spined stickleback (hap1 2024))(info)GCA_964276395.1

•Gasterosteus aculeatus aculeatus(three-spined stickleback)(info)GCF_016920845.1

Anoplopomatales

Anoplopomatidae

Anoplopoma

•Anoplopoma fimbria(sablefish (Golden Eagle Sablefish UVic2021 2023))(info)GCF_027596085.1

•Sebastes umbrosus(honeycomb rockfish (fSebUmb1 alternate hap 2020))(info)GCA_015220095.1

•Sebastes umbrosus(honeycomb rockfish (primary hap 2020))(info)GCF_015220745.1

Sebastes fasciatus

•Sebastes fasciatus(Acadian redfish (fSebFas1 primary hap 2024 genbank))(info)GCA_043250625.1

•Sebastes fasciatus(Acadian redfish (fSebFas1 primary hap 2024 refseq))(info)GCF_043250625.1

Epinephelus lanceolatus

•Epinephelus lanceolatus(giant grouper (andai-2023 2024))(info)GCA_041903045.1

•Epinephelus lanceolatus(giant grouper (Andai001 2019))(info)GCF_005281545.1

Epinephelus rankini

•Epinephelus rankini(Rankin cod (hap2 2025))(info)GCA_048129065.1

•Epinephelus rankini(Rankin cod (hap1 2025))(info)GCA_048129235.1

•Epinephelus fuscoguttatus(brown-marbled grouper (2020))(info)GCF_011397635.1

•Epinephelus moara(kelp grouper (mb 2019))(info)GCF_006386435.1

Plectropomus

•Plectropomus leopardus(leopard coralgrouper)(info)GCF_008729295.1

Serraninae

Centropristis

•Centropristis striata(black seabass (Rhode Island RG_2023a 2023))(info)GCF_030273125.1

•Cottoperca gobio(channel bull blenny (2019 genbank))(info)GCA_900634415.1

•Cottoperca gobio(channel bull blenny (alternate hap 2019))(info)GCA_900634435.1

•Cottoperca gobio(channel bull blenny (2019 refseq))(info)GCF_900634415.1

Nototheniidae

Notothenia

Notothenia rossii

•Notothenia rossii(marbled rockcod (alternate hap 2023))(info)GCA_949606865.1

•Notothenia rossii(marbled rockcod (primary hap 2023))(info)GCA_949606895.1

•Notothenia coriiceps(black rockcod)(info)GCF_000735185.1

Trematomus

•Trematomus bernacchii(emerald rockcod)(info)GCF_902827165.1

Harpagiferidae

Harpagiferinae

Harpagifer

•Harpagifer antarcticus(Antarctic spiny plunderfish (primary hap 2020))(info)GCA_902827135.1

Eleginopidae

Eleginops

•Eleginops maclovinus(Patagonian blennie (Puerto Natales JMC-PN-2008 2024))(info)GCF_036324505.1

Bathydraconidae

Gymnodraco

•Gymnodraco acuticeps(ploughfish)(info)GCF_902827175.1

Channichthyidae

Pseudochaenichthys

Pseudochaenichthys georgianus

•Pseudochaenichthys georgianus(South Georgia icefish (v2 primary hap 2022))(info)GCF_902827115.2

•Pseudochaenichthys georgianus(South Georgia icefish (v1 primary hap 2020))(info)GCF_902827115.1

Triglioidei

Triglidae

Eutrigla

•Eutrigla gurnardus(grey gurnard (primary hap 2023))(info)GCA_963514095.1

Percoidei

Trachinidae

Echiichthys

•Echiichthys vipera(lesser weever (primary hap 2023))(info)GCA_963691815.1

•Etheostoma cragini(Arkansas darter)(info)GCF_013103735.1

Oligocephalus

•Etheostoma spectabile(orangethroat darter)(info)GCF_008692095.1

Percinae

Perca

•Perca fluviatilis(European perch)(info)GCF_010015445.1

•Perca flavescens(yellow perch (YP-PL-M2 2019))(info)GCF_004354835.1

Luciopercinae

Sander

Sander lucioperca

•Sander lucioperca(pike-perch)(info)GCF_008315115.2

•Sander lucioperca(pike-perch)(info)GCF_008315115.1

Antennarius maculatus

•Antennarius maculatus(warty frogfish (fAntMac1 alternate hap 2020))(info)GCA_013347815.1

•Antennarius maculatus(warty frogfish (primary hap 2020))(info)GCA_013358685.1

•Antennarius striatus(striated frogfish (MH-2024 2024))(info)GCF_040054535.1

Brachionichthyidae

Brachionichthys

•Brachionichthys hirsutus(bony fish B.hirsutus (HB-005 2024))(info)GCF_040956055.1

•Chelmon rostratus(copperband butterflyfish (fCheRos1 alternate hap 2021))(info)GCA_017976315.1

•Chelmon rostratus(copperband butterflyfish (primary hap 2021))(info)GCF_017976325.1

Chaetodon

Chaetodon trifascialis

•Chaetodon trifascialis(chevron butterflyfish (hap2 2024))(info)GCA_039877575.1

•Chaetodon trifascialis(chevron butterflyfish (hap1 2024 genbank))(info)GCA_039877785.1

•Chaetodon trifascialis(chevron butterflyfish (hap1 2024 refseq))(info)GCF_039877785.1

•Chaetodon auriga(threadfin butterflyfish (fChaAug3hap1 2025))(info)GCF_051107435.1

Micropterus salmoides

•Micropterus salmoides(largemouth bass (2-A1 2021))(info)GCA_019677235.1

•Micropterus salmoides(largemouth bass (LMB-PRFRI aquatic 2020))(info)GCF_014851395.1

•Micropterus dolomieu(smallmouth bass)(info)GCF_021292245.1

Enoplosidae

Enoplosus

Enoplosus armatus

•Enoplosus armatus(old wife E.armatus (hap2 2024))(info)GCA_043640875.1

•Enoplosus armatus(old wife E.armatus (hap1 2024))(info)GCF_043641665.1

Sinipercidae

Siniperca

•Siniperca chuatsi(mandarin fish (FFG_IHB_CAS 2021))(info)GCF_020085105.1

Eupercaria incertae sedis

Scatophagidae

Scatophagus

Scatophagus argus

•Scatophagus argus(butterfish (fScaArg1 alternate hap 2021))(info)GCA_020382915.1

•Scatophagus argus(butterfish (primary hap 2021))(info)GCF_020382885.2

Moronidae

Dicentrarchus

•Dicentrarchus labrax(European seabass (2021))(info)GCF_905237075.1

Morone

•Morone saxatilis(striped sea-bass)(info)GCF_004916995.1

Sciaenidae

Larimichthys

•Larimichthys crocea(large yellow croaker)(info)GCF_000972845.2

Sciaenops

•Sciaenops ocellatus(red drum (XU1910 2020))(info)GCA_014183145.1

Acropomatiformes

Lateolabracidae

Lateolabrax

•Lateolabrax maculatus(spotted sea bass (ZS-2023 2023))(info)GCA_031216445.1

Pempheridae

Pempheris

Pempheris klunzingeri

•Pempheris klunzingeri(rough bullseye (RE-2024b hap1 2024 genbank))(info)GCA_042242105.1

•Pempheris klunzingeri(rough bullseye (RE-2024b hap2 2024))(info)GCA_042242125.1

•Pempheris klunzingeri(rouch bullseye (RE-2024b hap1 2024 refseq))(info)GCF_042242105.1

Spariformes

Sparidae

Acanthopagrus

•Acanthopagrus schlegelii(black porgy (SG-2024 2024))(info)GCA_041753875.1

Acanthopagrus latus

•Acanthopagrus latus(yellowfin seabream (v.2019 alternate hap 2020))(info)GCA_904848175.1

•Acanthopagrus latus(yellowfin seabream (v.2019 primary hap 2020))(info)GCF_904848185.1

Sparus

Sparus aurata

•Sparus aurata(gilthead seabream (v2 2021))(info)GCA_900880675.2

•Sparus aurata(gilthead seabream (alternate hap 2019))(info)GCA_900880695.1

•Sparus aurata(gilthead seabream (v1 2019))(info)GCF_900880675.1

Pagrus

Pagrus pagrus

•Pagrus pagrus(common seabream (hap2.1 2025))(info)GCA_965225695.1

•Pagrus pagrus(common seabream (hap1.1 2025))(info)GCA_965226575.1

•Pagrus major(red seabream (2024))(info)GCF_040436345.1

•Lethrinus nebulosus(spangled emperor (hap2 2024))(info)GCA_045362485.1

•Lethrinus nebulosus(spangled emperor (hap1 2024))(info)GCA_045362495.1

•Pristipomoides typus(sharptooth jobfish (hap2 2024))(info)GCA_045363885.1

•Pristipomoides typus(sharptooth jobfish (hap1 2024))(info)GCA_045363895.1

Paradicichthyinae

Symphorus

Symphorus nematophorus

•Symphorus nematophorus(chinamanfish (OG11 2025))(info)GCA_048128715.1

•Symphorus nematophorus(chinamanfish (OG11 2025))(info)GCA_048128725.1

Caesioninae

Caesio

Caesio teres

•Caesio teres(yellow and blueback fusilier (OG672 2025))(info)GCA_048129025.1

•Caesio teres(yellow and blueback fusilier (OG672 2025))(info)GCA_048129055.1

•Takifugu rubripes(torafugu (fTakRub1.3 2021 genbank))(info)GCA_901000725.3

•Takifugu rubripes(torafugu (alternate hap 2019))(info)GCA_901000745.3

•Takifugu rubripes(torafugu (fTakRub1.2 2019 refseq))(info)GCF_901000725.2

•Takifugu bimaculatus(double-spotted pufferfish T.bimaculatus (TB-2018 2019))(info)GCA_004026145.2

•Takifugu flavidus(sansaifugu (HTHZ2018 2019))(info)GCF_003711565.1

Tetraodon

•Tetraodon nigroviridis(spotted green pufferfish (2004))(info)GCA_000180735.1

Balistoidea

Monacanthidae

Nelusetta

•Nelusetta ayraudi(Chinaman-leatherjacket (Tasmania G7.1 2024))(info)GCF_046127955.1

Uranoscopiformes

Ammodytidae

Hyperoplus

Hyperoplus immaculatus

•Hyperoplus immaculatus(greater sand-eel (primary hap 2023))(info)GCA_949357725.1

•Hyperoplus immaculatus(greater sand-eel (alternate hap 2023))(info)GCA_949358355.1

Ammodytes

Ammodytes marinus

•Ammodytes marinus(lesser sand-eel (primary hap 2023))(info)GCA_949987685.1

•Ammodytes marinus(lesser sand-eel (alternate hap 2023))(info)GCA_950004245.1

Eucyclogobius newberryi

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_F 2022))(info)GCA_026437355.1

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_F 2022 genbank))(info)GCA_026437365.1

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_Fhap1 2022 refseq))(info)GCF_026437365.1

Oxudercinae

Periophthalmus

Periophthalmus magnuspinnatus

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 genbank))(info)GCA_009829125.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 alternate hap 2020 genbank))(info)GCA_009829135.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 refseq))(info)GCF_009829125.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1.2 primary hap 2023))(info)GCF_009829125.3

Boleophthalmus

Boleophthalmus pectinirostris

•Boleophthalmus pectinirostris(great blue-spotted mudskipper (Guang Dong 2022))(info)GCF_026225935.1

•Boleophthalmus pectinirostris(great blue-spotted mudskipper (pooled male+femail 2014 BGI))(info)GCF_000788275.1

Gobiinae

Gobius

Gobius niger

•Gobius niger(black goby (primary hap 2023))(info)GCA_951799975.1

•Gobius niger(black goby (alternate hap 2023))(info)GCA_951799965.1

Sphaeramia orbicularis

•Sphaeramia orbicularis(orbiculate cardinalfish (alternate hap 2019))(info)GCA_902148825.1

•Sphaeramia orbicularis(orbiculate cardinalfish (2019))(info)GCF_902148855.1

Hippoglossus hippoglossus

•Hippoglossus hippoglossus(Atlantic halibut (primary hap 2019 genbank))(info)GCA_009819705.1

•Hippoglossus hippoglossus(Atlantic halibut (alternate hap 2019))(info)GCA_009819745.1

•Hippoglossus hippoglossus(Atlantic halibut (2019 refseq))(info)GCF_009819705.1

Hippoglossus stenolepis

•Hippoglossus stenolepis(Pacific halibut (PH-IPHC-18 2020))(info)GCF_013339905.1

•Hippoglossus stenolepis(Pacific halibut (QCI-W04-F060 2022))(info)GCF_022539355.2

Pleuronectes

Pleuronectes platessa

•Pleuronectes platessa(European plaice (alternate hap 2022))(info)GCA_947347695.1

•Pleuronectes platessa(European plaice (primary hap 2022 refseq))(info)GCF_947347685.1

•Pleuronectes platessa(European plaice (primary hap 2022 genbank))(info)GCA_947347685.1

Platichthys

Platichthys flesus

•Platichthys flesus(European flounder (alternate hap 2023))(info)GCA_949316195.1

•Platichthys flesus(European flounder (primary hap 2023 genbank))(info)GCA_949316205.1

•Platichthys flesus(European flounder (primary hap 2023 refseq))(info)GCF_949316205.1

Microstomus

•Microstomus kitt(lemon sole (primary hap 2024))(info)GCA_964266715.1

Limanda

•Limanda limanda(common dab (primary hap 2023))(info)GCF_963576545.1

Soleidae

Solea

Solea solea

•Solea solea(common sole (alternate hap 2023))(info)GCA_958295035.1

•Solea solea(common sole (primary hap 2023 refseq))(info)GCF_958295425.1

•Solea solea(common sole (primary hap 2023 genbank))(info)GCA_958295425.1

•Solea senegalensis(Senegalese sole)(info)GCF_019176455.1

Microchirus

•Microchirus variegatus(thickback sole (primary hap 2023))(info)GCA_963457635.1

Scophthalmidae

Scophthalmus

Scophthalmus maximus

•Scophthalmus maximus(turbot (primary hap 2023))(info)GCA_963854745.1

•Scophthalmus maximus(Atlantic turbot (AOZZmale01 2020))(info)GCF_013347765.1

•Scophthalmus maximus(turbot (ysfricsl-2021 2022))(info)GCF_022379125.1

Paralichthyidae

Paralichthys

Paralichthys olivaceus

•Paralichthys olivaceus(Japanese flounder)(info)GCF_001970005.1

•Paralichthys olivaceus(Japanese flounder (ysfri-2021 2022))(info)GCF_024713975.1

Cynoglossidae

Cynoglossinae

Cynoglossus

•Cynoglossus semilaevis(tongue sole)(info)GCF_000523025.1

Carangaria incertae sedis

Toxotidae

Toxotes

Toxotes jaculatrix

•Toxotes jaculatrix(banded archerfish (alternate hap 2021))(info)GCA_017976295.1

•Toxotes jaculatrix(banded archerfish (primary hap 2021 refseq))(info)GCF_017976425.1

•Toxotes jaculatrix(banded archerfish (primary hap 2021 genbank))(info)GCA_017976425.1

Centropomidae

Lates

Lates calcarifer

•Lates calcarifer(barramundi perch (ASB-BC8 2022))(info)GCF_001640805.2

•Lates calcarifer(barramundi perch (ASB-BC8 2016))(info)GCF_001640805.1

•Echeneis naucrates(live sharksucker (v2 2021))(info)GCA_900963305.2

•Echeneis naucrates(live sharksucker (alternate hap 2019))(info)GCA_900963505.1

•Echeneis naucrates(live sharksucker (v1 2019))(info)GCF_900963305.1

Carangidae

Trachurus

Trachurus trachurus

•Trachurus trachurus(Atlantic horse mackerel (alternate hap 2021))(info)GCA_905171655.2

•Trachurus trachurus(Atlantic horse mackerel (primary hap 2021))(info)GCA_905171665.2

Seriola

•Seriola aureovittata(amberjack S.aureovittata (China HTS-2021-v1 2021))(info)GCF_021018895.1

•Seriola dumerili(greater amberjack)(info)GCF_002260705.1

Seriola lalandi

Seriola lalandi dorsalis

•Seriola lalandi dorsalis(yellowtail amberjack (v2 SW California HSWRI2012SDOR001 2017))(info)GCF_002814215.2

•Seriola lalandi dorsalis(yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017))(info)GCF_002814215.1

Trachinotus

•Trachinotus anak(oyster pompano (Australia AG129_WGS33_773 2025))(info)GCF_046630095.1

Istiophoriformes

Xiphiidae

Xiphias

•Xiphias gladius(swordfish)(info)GCF_016859285.1

•Scomber japonicus(chub mackerel (fScoJap1 alternate hap 2022))(info)GCA_027409835.1

•Scomber japonicus(chub mackerel (primary hap 2022 refseq))(info)GCF_027409825.1

•Scomber japonicus(chub mackerel (primary hap 2022 genbank))(info)GCA_027409825.1

Scomber scombrus

•Scomber scombrus(Atlantic mackerel (primary hap 2023 genbank))(info)GCA_963691925.1

•Scomber scombrus(Atlantic mackerel (primary hap 2023 refseq))(info)GCF_963691925.1

Thunnini

Thunnus

Thunnus maccoyii

•Thunnus maccoyii(southern bluefin tuna (alternate hap 2021))(info)GCA_910596085.1

•Thunnus maccoyii(southern bluefin tuna (primary hap 2021 refseq))(info)GCF_910596095.1

•Thunnus maccoyii(southern bluefin tuna (primary hap 2021 genbank))(info)GCA_910596095.1

Thunnus albacares

•Thunnus albacares(yellowfin tuna (alternate hap 2021))(info)GCA_914744365.1

•Thunnus albacares(yellowfin tuna (primary hap 2021))(info)GCF_914725855.1

Thunnus thynnus

•Thunnus thynnus(Atlantic bluefin tuna (primary hap 2024 genbank))(info)GCA_963924715.1

•Thunnus thynnus(Atlantic bluefin tuna (primary hap 2024 refseq))(info)GCF_963924715.1

Arripidae

Arripis

Arripis georgiana

•Arripis georgiana(Australian ruff (RE-2024a hap1 2024))(info)GCA_042242115.1

•Arripis georgiana(Australian ruff (RE-2024a hap2 2024))(info)GCA_042242135.1

Neosynchiropus ocellatus

•Neosynchiropus ocellatus(ocellated dragonet (captive hap2 2024))(info)GCA_044231645.1

•Neosynchiropus ocellatus(ocellated dragonet (captive hap1 2024))(info)GCA_044231665.1

Synchiropus

Synchiropus picturatus

•Synchiropus picturatus(picturesque dragonet (SynPic1 hap2 2024))(info)GCA_044231675.1

•Synchiropus picturatus(picturesque dragonet (SynPic1 hap1 2024))(info)GCA_044231685.1

•Synchiropus splendidus(mandarin fish (RoL2022-P1 2023))(info)GCF_027744825.2

•Syngnathus typhle(broad-nosed pipefish (SK-2024d hap1 2025))(info)GCA_048301445.1

•Syngnathus typhle(broad-nosed pipefish (SK-2024d hap2 2025))(info)GCA_048301605.1

•Syngnathus typhle(broad-nosed pipefish (Sweden RoL2023-S1 2023))(info)GCF_033458585.1

Syngnathus acus

•Syngnathus acus(greater pipefish (v1.1 2019))(info)GCA_901709675.1

•Syngnathus acus(greater pipefish (v1 alternate hap 2019))(info)GCA_901709685.1

•Syngnathus acus(greater pipefish (v2 alternate haplotype 2023))(info)GCA_948146095.1

•Syngnathus acus(greater pipefish (v2 2023 genbank))(info)GCA_948146105.1

•Syngnathus acus(greater pipefish (v1.2 2020 refseq))(info)GCF_901709675.1

Syngnathus scovelli

•Syngnathus scovelli(Gulf pipefish (Florida 2022))(info)GCF_024217435.2

•Syngnathus scovelli(Gulf pipefish (RoL_Ssco_1.1 Florida 2022 refseq))(info)GCF_024217435.1

•Syngnathus scovelli(Gulf pipefish (RoL_Ssco_1.2 Florida 2022 genbank))(info)GCA_024217435.4

Syngnathoides

•Syngnathoides biaculeatus(alligator pipefish (LvHL_M 2021))(info)GCF_019802595.1

Doryrhamphus

•Doryrhamphus excisus(bluestripe pipefish (RoL2022-K1 2023))(info)GCF_030265055.1

Phyllopteryx

•Phyllopteryx taeniolatus(common seadragon (TA_2022b 2022))(info)GCF_024500385.1

Phycodurus

•Phycodurus eques(leafy seadragon (BA_2022a 2022))(info)GCF_024500275.1

Dunckerocampus

•Dunckerocampus dactyliophorus(ringed pipefish (RoL2022-P2 2023))(info)GCF_027744805.1

Corythoichthys

•Corythoichthys intestinalis(scribbled pipefish (RoL2023-P3 2023))(info)GCF_030265065.1

Entelurus

•Entelurus aequoreus(snake pipefish (RoL-2023_Sb 2023))(info)GCF_033978785.1

Nerophis

•Nerophis ophidion(straightnose pipefish (RoL-2023_Sa 2023))(info)GCF_033978795.1

Nerophis lumbriciformis

•Nerophis lumbriciformis(worm pipefish (v2.1 RoL_2023-P12025))(info)GCF_033978685.3

•Nerophis lumbriciformis(worm pipefish (v1 RoL_2023-P1 2023))(info)GCF_033978685.1

Hippocampinae

Hippocampus

•Hippocampus zosterae(dwarf seahorse (Florida 2022))(info)GCF_025434085.1

Hippocampus comes

•Hippocampus comes(tiger tail seahorse (QL1 v2 2016))(info)GCF_001891065.2

•Hippocampus comes(tiger tail seahorse (QL1 v1 2016))(info)GCF_001891065.1

Syngnathiformes incertae sedis

Aulostomidae

Aulostomus

Aulostomus maculatus

•Aulostomus maculatus(trumpetfish (SK-2024c 2025))(info)GCA_048301465.1

•Aulostomus maculatus(trumpetfish (SK-2024c 2025))(info)GCA_048301475.1

•Anabas testudineus(climbing perch (v1.2 2018 genbank))(info)GCA_900324465.2

•Anabas testudineus(climbing perch (v1.3 2021))(info)GCA_900324465.3

•Anabas testudineus(climbing perch (alternate hap 2019))(info)GCA_900650485.1

•Anabas testudineus(climbing perch (v1.2 2018 refseq))(info)GCF_900324465.2

•Anabas testudineus(climbing perch (v1.1 2018 refseq))(info)GCF_900324465.1

•Betta splendens(Siamese fighting fish (v1 alternate hap 2019))(info)GCA_900651605.1

•Betta splendens(Siamese fighting fish (v5.4 alternate hap 2023))(info)GCA_900651605.2

•Betta splendens(Siamese fighting fish (v2 primary hap 2019))(info)GCF_900634795.2

•Betta splendens(Siamese fighting fish (v3 primary hap 2020))(info)GCF_900634795.3

•Betta splendens(Siamese fighting fish (v4 primary hap 2023))(info)GCF_900634795.4

Channoidei

Channidae

Channa

•Channa argus(northern snakehead (prfri 2023))(info)GCF_033026475.1

Mastacembelus armatus

•Mastacembelus armatus(zig-zag eel (v1.3 2021 genbank))(info)GCA_900324485.3

•Mastacembelus armatus(zig-zag eel (alternate hap))(info)GCA_900700395.1

•Mastacembelus armatus(zig-zag eel (v1.2 2019 refseq))(info)GCF_900324485.2

•Mastacembelus armatus(zig-zag eel (v1.1 2018))(info)GCF_900324485.1

Synbranchoidei

Synbranchidae

Monopterus

•Monopterus albus(swamp eel)(info)GCF_001952655.1

Thalassophryne amazonica

•Thalassophryne amazonica(prehistoric monster fish (alternate hap 2019))(info)GCA_902500245.1

•Thalassophryne amazonica(prehistoric monster fish (2019 genbank))(info)GCA_902500255.1

•Thalassophryne amazonica(prehistoric monster fish (2019 refseq))(info)GCF_902500255.1

•Genypterus blacodes(pink cusk-eel (Tasmania CSIRO-AG114 2024))(info)GCF_046128005.1

•Centroberyx gerrardi(bight redfish (hap1 2025))(info)GCA_048128805.1

•Centroberyx gerrardi(bight redfish (hap2 2025))(info)GCA_048129085.1

•Centroberyx gerrardi(bight redfish (2022))(info)GCF_026898505.1

•Centroberyx affinis(redfish (Tasmania AG114_WGS23_722 - 3 2025))(info)GCF_046629955.1

Melamphaidae

Poromitra

Poromitra crassiceps

•Poromitra crassiceps(crested bigscale (hap1.1 2025))(info)GCA_964638095.1

•Poromitra crassiceps(crested bigscale (hap2.1 2025))(info)GCA_964638665.1

•Diretmus argenteus(silver spinyfin (hap1 2025))(info)GCA_048569125.1

•Diretmus argenteus(silver spinyfin (hap2 2025))(info)GCA_048569135.1

•Myripristis murdjan(pinecone soldierfish (alternate hap 2019))(info)GCA_902148815.1

•Myripristis murdjan(pinecone soldierfish (2019))(info)GCF_902150065.1

•Lampris incognitus(smalleye Pacific opah (hap1 2023))(info)GCA_029633845.1

•Lampris incognitus(smalleye Pacific opah (hap2 2023 refseq))(info)GCF_029633865.1

•Lampris incognitus(smalleye Pacific opah (hap2 2023 genbank))(info)GCA_029633865.1

•Amblyopsis spelaea(northern cavefish (hap1 2024))(info)GCA_046255685.1

•Amblyopsis spelaea(northern cavefish (hap2 2024))(info)GCA_046255725.1

•Gadus morhua(Atlantic cod (alternate hap))(info)GCA_902167395.1

•Gadus morhua(Atlantic cod (2019))(info)GCF_902167405.1

•Gadus macrocephalus(Pacific cod (2023))(info)GCF_031168955.1

•Gadus chalcogrammus(walleye pollock (NIFS_2021 2022))(info)GCF_026213295.1

Pollachius

Pollachius pollachius

•Pollachius pollachius(pollack (alternate hap 2023))(info)GCA_949987605.1

•Pollachius pollachius(pollack (primary hap 2023))(info)GCA_949987615.1

Micromesistius

•Micromesistius poutassou(blue whiting (primary hap 2024))(info)GCA_964030765.1

•Zeus faber(John dory (alternate hap 2023))(info)GCA_960530785.1

•Zeus faber(John dory (primary hap 2023))(info)GCA_960531495.1

•Polymixia lowei(beardfish (hap1 2025))(info)GCA_047511565.1

•Polymixia lowei(beardfish (hap2 2025))(info)GCA_047511595.1

Polymixia cf. hollisterae

•Polymixia cf. hollisterae(Bermuda beardfish (OG660 hap1 2025))(info)GCA_048537225.1

•Polymixia cf. hollisterae(Bermuda beardfish (OG660 hap2 2025))(info)GCA_048537235.1

•Electrona antarctica(Antarctic lanternfish (alternate hap 2023))(info)GCA_951214905.1

•Electrona antarctica(Antarctic lanternfish (primary hap 2023))(info)GCA_951216825.1

Gymnoscopelus

Gymnoscopelus braueri

•Gymnoscopelus braueri(Brauer's lanternfish (primary hap 2023))(info)GCA_963280865.1

•Gymnoscopelus braueri(Brauer's lanternfish (alternate hap 2023))(info)GCA_963281105.1

•Gymnoscopelus microlampas(minispotted lanternfish (primary hap 2023))(info)GCA_963454915.1

Nannobrachium

•Nannobrachium achirus(lantern fish (primary hap 2024))(info)GCA_963921795.1

Protomyctophum

•Protomyctophum bolini(Bolin's lanternfish (primary hap 2024))(info)GCA_963924005.1

Protomyctophum parallelum

•Protomyctophum parallelum(parallel lanternfish (primary hap 2024))(info)GCA_964188405.1

•Protomyctophum parallelum(parallel lanternfish (alternate hap 2024))(info)GCA_964188415.1

•Notolepis coatsorum(Antarctic jonasfish (primary hap 2024))(info)GCA_963971535.1