Taxonomy - Bilateria

Taxonomy:

root › cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria

Taxonomy information:

View on NCBI (taxonomy ID: 33213)

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4296 accessions

•Bucorvus abyssinicus(Abyssinian ground-hornbill (alternate hap 2019))(info)GCA_009769595.1

•Bucorvus abyssinicus(Abyssinian ground-hornbill (primary hap 2019))(info)GCA_009769605.1

Bucerotidae

Buceros

Buceros rhinoceros

•Buceros rhinoceros silvestris(rhinoceros hornbill)(info)GCF_000710305.1

Piciformes

Picidae

Melanerpes

Melanerpes formicivorus

•Melanerpes formicivorus(acorn woodpecker (bairdi alternate hap 2022))(info)GCA_026170555.1

•Melanerpes formicivorus(acorn woodpecker (bairdi primary hap 2022))(info)GCA_026170545.1

•Melanerpes formicivorus(acorn woodpecker (bairdi primary hap 2022))(info)GCF_026170545.1

Dryobates

Dryobates pubescens

•Dryobates pubescens(Downy woodpecker (alternate hap 2020))(info)GCA_014839825.1

•Dryobates pubescens(downy woodpecker (primary hap 2020))(info)GCF_014839835.1

•Dryobates pubescens(downy woodpecker (bDryPub1 primary hap 2020))(info)GCA_014839835.1

•Dryobates pubescens(downy woodpecker (BGI 2014))(info)GCF_000699005.1

Indicatoridae

Indicator

•Indicator indicator(greater honeyguide (239-I01 2023))(info)GCF_027791375.1

Lybiidae

Pogoniulus

Pogoniulus pusillus

•Pogoniulus pusillus(red-fronted tinkerbird (bPogPus1 alternate hap 2020))(info)GCA_015220175.1

•Pogoniulus pusillus(red-fronted tinkerbird (primary hap 2020 genbank))(info)GCA_015220805.1

•Pogoniulus pusillus(red-fronted tinkerbird (primary hap 2020 refseq))(info)GCF_015220805.1

Trogoniformes

Trogonidae

Apaloderma

•Apaloderma vittatum(bar-tailed trogon)(info)GCF_000703405.1

Trogon

Trogon surrucura

•Trogon surrucura(Suruca trogon (bTroSur1 alternate hap 2021))(info)GCA_020746095.1

•Trogon surrucura(Suruca trogon (primary hap 2021))(info)GCA_020746105.1

•Merops nubicus(carmine bee-eater (alternate hap 2019))(info)GCA_009819585.1

•Merops nubicus(carmine bee-eater (primary hap 2019))(info)GCA_009819595.1

•Merops nubicus(carmine bee-eater (2014 BGI))(info)GCF_000691845.1

•Leptosomus discolor(cuckoo roller (BGI_N330 2014))(info)GCF_000691785.1

•Leptosomus discolor(cuckoo roller (hap1 2023))(info)GCA_034619455.1

•Leptosomus discolor(cuckoo roller (hap2 2023))(info)GCA_034619465.1

•Colius striatus(speckled mousebird (BGI_N325 2014))(info)GCF_000690715.1

•Colius striatus(speckled mousebird (hap1 2023 refseq))(info)GCF_028858725.1

•Colius striatus(speckled mousebird (v2 hap2 2023))(info)GCA_028858625.2

•Colius striatus(speckled mousebird (v1 hap2 2023))(info)GCA_028858625.1

•Colius striatus(speckled mousebird (hap1 2023 genbank))(info)GCA_028858725.1

•Corvus brachyrhynchos(American crow)(info)GCF_000691975.1

Corvus hawaiiensis

•Corvus hawaiiensis(Hawaiian crow (bCorHaw1 alternate hap 2021))(info)GCA_020740675.1

•Corvus hawaiiensis(Hawaiian crow (primary hap 2021 refseq))(info)GCF_020740725.1

•Corvus hawaiiensis(Hawaiian crow (2021 genbank))(info)GCA_020740725.1

Corvus cornix

Corvus cornix cornix

•Corvus cornix cornix(hooded crow (v6 S_Up_H32 2022))(info)GCF_000738735.6

•Corvus cornix cornix(hooded crow (v2 S_Up_H32 2017))(info)GCF_000738735.2

•Corvus cornix cornix(hooded crow (v5 S_Up_H32 2021))(info)GCF_000738735.5

•Corvus kubaryi(Mariana crow)(info)GCF_017639235.1

Corvus moneduloides

•Corvus moneduloides(New Caledonian crow (alternate hap 2019))(info)GCA_009651025.1

•Corvus moneduloides(New Caledonian crow (primary hap 2019))(info)GCF_009650955.1

Cyanocitta

Cyanocitta cristata

•Cyanocitta cristata(blue jay (hap1 2024))(info)GCA_046129655.1

•Cyanocitta cristata(blue jay (hap2 2024))(info)GCA_046129645.1

Cyanocitta stelleri

•Cyanocitta stelleri(Steller's jay (frontalis alternate hap 2022))(info)GCA_026168045.1

•Cyanocitta stelleri(Steller's jay (frontalis primary hap 2022))(info)GCA_026167965.1

Coloeus

Coloeus monedula

•Coloeus monedula(jackdaw (hap1.1 2025))(info)GCA_965178545.1

•Coloeus monedula(jackdaw (hap2.1 2025))(info)GCA_965178535.1

•Coloeus monedula(jackdaw (S_Up_J01 2020))(info)GCA_013407035.1

Aphelocoma

•Aphelocoma coerulescens(scrub jay (FSJ_1873_10779 2024))(info)GCF_041296385.1

Aphelocoma californica

•Aphelocoma californica(western scrub-jay (CA MVZ Bird 193978 2023))(info)GCA_028536645.1

•Aphelocoma californica(western scrub-jay (CA MVZ Bird 193978 2023))(info)GCA_028536675.1

Paradisaeidae

Lycocorax

Lycocorax pyrrhopterus

•Lycocorax pyrrhopterus obiensis(Obi paradise-crow (lycPyr6 2020))(info)GCA_014706295.1

•Hirundo rustica(Barn swallow (bHirRus1 v3 alternate hap 2021))(info)GCA_015227815.3

•Hirundo rustica(barn swallow (v3 primary hap 2021 refseq))(info)GCF_015227805.2

•Hirundo rustica(barn swallow (v3 primary hap 2021 genbank))(info)GCA_015227805.3

•Hirundo rustica(barn swallow (v2 primary hap 2021 refseq))(info)GCF_015227805.1

•Hirundo rustica(barn swallow (bHirRus1 v2 primary hap genbank 2021))(info)GCA_015227805.2

Tachycineta

•Tachycineta bicolor(tree swallow (Ithaca 2401-50270 2024))(info)GCA_007636935.2

•Sylvia atricapilla(blackcap (alternate hap 2019))(info)GCA_009819715.1

•Sylvia atricapilla(blackcap (primary hap 2019 refseq))(info)GCF_009819655.1

•Sylvia atricapilla(blackcap (primary hap 2019 genbank))(info)GCA_009819655.1

Sylvia borin

•Sylvia borin(garden warbler (bSylBor1 alternate hap 2020))(info)GCA_014839765.1

•Sylvia borin(garden warbler (primary hap 2020))(info)GCA_014839755.1

Sylviidae incertae sedis

Chamaea

Chamaea fasciata

•Chamaea fasciata(wrentit (frontalis MVZ Bird 193981 alternate hap 2023))(info)GCA_029207785.1

•Chamaea fasciata(wrentit (frontalis MVZ Bird 193981 primary hap 2023 refseq))(info)GCF_029207755.1

•Chamaea fasciata(wrentit (frontalis MVZ Bird 193981 primary hap 2023))(info)GCA_029207755.1

Zosteropidae

Zosterops

Zosterops lateralis

•Zosterops lateralis(silver-eye (hap1.1 2025))(info)GCA_965231275.1

•Zosterops lateralis(silver-eye (hap2.1 2025))(info)GCA_965231245.1

Cisticolidae

Prinia

•Prinia subflava(tawny-flanked prinia (Zambia CZ2003 2024))(info)GCF_021018805.1

•Lonchura striata(Bengalese finch)(info)GCF_005870125.1

•Lonchura striata(Bengalese finch (primary hap 2025))(info)GCA_050655825.1

•Lonchura striata(white-rumped munia (maternal hap 2024 genbank))(info)GCA_046129695.1

•Lonchura striata(white-rumped munia (maternal hap 2024 refseq))(info)GCF_046129695.1

•Lonchura striata(white-rumped munia (paternal hap 2024))(info)GCA_046129705.1

Taeniopygia

Taeniopygia guttata

•Taeniopygia guttata(zebra finch (2025))(info)GCF_048771995.1

•Taeniopygia guttata(zebra finch (alternate hap Black17 2018))(info)GCA_003957525.1

•Taeniopygia guttata(zebra finch (alternate hap Blue55 v1 2020))(info)GCA_009859025.1

•Taeniopygia guttata(zebra finch (Black17 v1.4 alternate hap 2021))(info)GCA_003957525.2

•Taeniopygia guttata(zebra finch (Blue55 female 2020 genbank))(info)GCA_009859065.2

•Taeniopygia guttata(zebra finch (Blue55 paternal 2019))(info)GCA_008822125.1

•Taeniopygia guttata(zebra finch (Blue55 paternal W 2020))(info)GCF_008822105.2

•Taeniopygia guttata(zebra finch (bTaeGut7 maternal hap 2025))(info)GCA_048771995.1

•Taeniopygia guttata(zebra finch (bTaeGut7 paternal hap 2025))(info)GCA_048772025.1

•Taeniopygia guttata(zebra finch (v1.4 Blue55 female primary hap 2021 refseq))(info)GCF_003957565.2

•Taeniopygia guttata(zebra finch (v3 Blue55 maternal 2020))(info)GCA_008822115.3

•Taeniopygia guttata(zebra finch (v1 Black17 male 2019 genbank))(info)GCA_003957565.2

•Taeniopygia guttata(zebra finch (v1.4 Blue55 primary hap 2021 genbank))(info)GCA_003957565.4

•Taeniopygia guttata(zebra finch (v1 Black17 2019 refseq))(info)GCF_003957565.1

Viduinae

Vidua

•Vidua macroura(pin-tailed whydah (BioBank_ID:100142 2022))(info)GCF_024509145.1

Vidua chalybeata

•Vidua chalybeata(village indigobird (merged hap OUT-0048 2022 genbank))(info)GCA_026979565.1

•Vidua chalybeata(village indigobird (merged hap OUT-0048 2022 refseq))(info)GCF_026979565.1

•Vidua chalybeata(village indigobird (purged dups hap OUT-0048 2022))(info)GCA_026979555.1

Passeridae

Anomalospiza

•Anomalospiza imberbis(bird A.imberbis (Cuckoo-Finch-1a 21T00152 2023))(info)GCF_031753505.1

Passer

•Passer montanus(Eurasian tree sparrow)(info)GCF_014805655.1

Passer domesticus

•Passer domesticus(house sparrow (hap1 2024 genbank))(info)GCA_036417665.1

•Passer domesticus(house sparrow (hap1 2024 refseq))(info)GCF_036417665.1

•Passer domesticus(house sparrow (hap2 2024))(info)GCA_036417895.1

Pyrgilauda

•Pyrgilauda ruficollis(rufous-necked snowfinch)(info)GCF_017590135.1

Onychostruthus

•Onychostruthus taczanowskii(white-rumped snowfinch)(info)GCF_017590055.1

Icteridae

Molothrus

•Molothrus aeneus(bronzed cowbird (106 2024))(info)GCF_037042795.1

Molothrus ater

•Molothrus ater(brown headed cowbird (v1.1 BHLD 08-10-18 2022))(info)GCF_012460135.2

•Molothrus ater(brown headed cowbird (v1.0 BHLD 08-10-18 2020))(info)GCF_012460135.1

Agelaius

Agelaius phoeniceus

•Agelaius phoeniceus(red-winged blackbird (BioBank_ID:100140 2023))(info)GCF_020745825.1

•Agelaius phoeniceus(red-winged blackbird (hap1 2025))(info)GCF_051311805.1

Agelaius tricolor

•Agelaius tricolor(tricolored blackbird (1412-34295 alternate hap 2022))(info)GCA_023055385.1

•Agelaius tricolor(tricolored blackbird (1412-34295 primary hap 2022 refseq))(info)GCF_023055355.1

•Agelaius tricolor(tricolored blackbird (1412-34295 primary hap 2022))(info)GCA_023055355.1

Fringillidae

Fringillinae

Fringilla

•Fringilla coelebs(chaffinch (primary hap 2023))(info)GCA_963513975.1

Carduelinae

Serinus

Serinus canaria

•Serinus canaria(common canary (domestic yellow sc_yellow_7_cibi 2019))(info)GCF_007115625.1

•Serinus canaria(common canary (serCan28SL12 2022))(info)GCF_022539315.1

Haemorhous

Haemorhous mexicanus

•Haemorhous mexicanus(house finch (bHaeMex1 alternate hap 2022))(info)GCA_027406555.1

•Haemorhous mexicanus(house finch (primary hap 2022 refseq))(info)GCF_027477595.1

•Haemorhous mexicanus(house finch (primary hap 2022 genbank))(info)GCA_027477595.1

Parulidae

Geothlypis

Geothlypis trichas

•Geothlypis trichas(common yellowthroat (alternate hap 2019))(info)GCA_009764545.1

•Geothlypis trichas(common yellowthroat (primary hap 2019))(info)GCA_009764595.1

Setophaga

Setophaga petechia

•Setophaga petechia(yellow warbler (LACM:Birds122168 alternate hap 2022))(info)GCA_024372515.1

•Setophaga petechia(yellow warbler (LACM:Birds122168 primary hap 2022))(info)GCA_024362935.1

Motacillidae

Motacilla

Motacilla alba

•Motacilla alba alba(white wagtail)(info)GCF_015832195.1

Passerellidae

Zonotrichia

Zonotrichia leucophrys

•Zonotrichia leucophrys gambelii(bird Z.leucophrys gambelii (GWCS_2022_RI 2023))(info)GCF_028769735.1

Zonotrichia albicollis

•Zonotrichia albicollis(white-throated sparrow (bZonAlb1hap1 2025))(info)GCF_047830755.1

•Zonotrichia albicollis(white-throated sparrow (hap1 2025))(info)GCA_047830755.1

•Zonotrichia albicollis(white-throated sparrow (hap2 2025))(info)GCA_047774235.1

•Zonotrichia albicollis(white-throated sparrow (Tan morph 2013))(info)GCF_000385455.1

Melozone

•Melozone crissalis(California towhee (CALT 2023))(info)GCF_028551555.1

Ammospiza

Ammospiza nelsoni

•Ammospiza nelsoni(Nelson's sparrow (bAmmNel1 alternate hap 2023))(info)GCA_027579665.1

•Ammospiza nelsoni(Nelson's sparrow (bAmmNel1 primary hap 2023 refseq))(info)GCF_027579445.1

•Ammospiza nelsoni(Nelson's sparrow (bAmmNel1 primary hap 2023 genbank))(info)GCA_027579445.1

Ammospiza caudacuta

•Ammospiza caudacuta(saltmarsh sparrow (bAmmCau1 alternate hap 2023))(info)GCA_027887135.1

•Ammospiza caudacuta(saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq))(info)GCF_027887145.1

•Ammospiza caudacuta(saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank))(info)GCA_027887145.1

Ammospiza maritima

•Ammospiza maritima maritima(seaside sparrow (bAmmMar1 primary hap 2024))(info)GCA_036010785.1

Artemisiospiza

Artemisiospiza belli

•Artemisiospiza belli(sage sparrow (canescens MVZ Bird 192114 alternate hap 2022))(info)GCA_021966175.1

•Artemisiospiza belli(sage sparrow (canescens MVZ Bird 192114 primary hap 2022))(info)GCA_021963965.1

Passerculus

Passerculus sandwichensis

•Passerculus sandwichensis(Savannah sparrow (primary hap 2023))(info)GCA_031885435.1

Passerculus sandwichensis alaudinus

•Passerculus sandwichensis alaudinus(Savannah sparrow (FMNH 499929 alternate hap 2022))(info)GCA_022578375.1

•Passerculus sandwichensis alaudinus(Savannah sparrow (FMNH 499929 primary hap 2022))(info)GCA_022577445.1

Melospiza

Melospiza melodia

•Melospiza melodia(song sparrow (gouldii PMB2087b alternate hap 2022))(info)GCA_022749775.1

•Melospiza melodia(song sparrow (gouldii PMB2087b primary hap 2022))(info)GCA_022749695.1

Melospiza melodia melodia

•Melospiza melodia melodia(song sparrow (primary hap 2024 genbank))(info)GCA_035770615.1

•Melospiza melodia melodia(song sparrow (primary hap 2024 refseq))(info)GCF_035770615.1

Melospiza georgiana

•Melospiza georgiana(swamp sparrow (bMelGeo1 alternate hap 2023))(info)GCA_028019105.1

•Melospiza georgiana(swamp sparrow (bMelGeo1 primary hap 2023 refseq))(info)GCF_028018845.1

•Melospiza georgiana(swamp sparrow (bMelGeo1 primary hap 2023 genbank))(info)GCA_028018845.1

Paridae

Poecile

Poecile atricapillus

•Poecile atricapillus(black-capped chickadee (hap1 2023))(info)GCF_030490865.1

•Poecile atricapillus(black-capped chickadee (hap2 2023))(info)GCA_030490855.1

Cyanistes

•Cyanistes caeruleus(blue tit)(info)GCF_002901205.1

Parus

•Parus major(great tit)(info)GCF_001522545.3

Pseudopodoces

•Pseudopodoces humilis(Tibetan ground-tit)(info)GCF_000331425.1

Thraupidae

Diglossa

•Diglossa brunneiventris(black-throated flowerpiercer)(info)GCA_019023105.1

Geospiza

•Geospiza fortis(medium ground-finch)(info)GCF_000277835.1

Camarhynchus

Camarhynchus parvulus

•Camarhynchus parvulus(small tree finch (2019))(info)GCF_901933205.1

•Camarhynchus parvulus(small tree finch (2020))(info)GCA_902806625.1

Pipridae

Lepidothrix

•Lepidothrix coronata(blue-crowned manakin)(info)GCF_001604755.1

Manacus

•Manacus vitellinus(golden-collared manakin)(info)GCF_001715985.3

•Manacus candei(white-collared manakin (Guabito, Panama 608988 2022))(info)GCF_025592945.1

Chiroxiphia

Chiroxiphia lanceolata

•Chiroxiphia lanceolata(lance-tailed manakin (2020))(info)GCF_009829145.1

•Chiroxiphia lanceolata(lance-tailed manakin (alternate hap 2020))(info)GCA_009829205.1

Neopelma

•Neopelma chrysocephalum(saffron-crested tyrant-manakin)(info)GCF_003984885.1

Pseudopipra

Pseudopipra pipra

•Pseudopipra pipra(white-crowned manakin (hap1 2024 genbank))(info)GCA_036250125.1

•Pseudopipra pipra(white-crowned manakin (hap1 2024 refseq))(info)GCF_036250125.1

•Pseudopipra pipra(white-crowned manakin (hap2 2024))(info)GCA_036250135.1

Corapipo

•Corapipo altera(white-ruffed manakin)(info)GCF_003945725.1

Pipra

Pipra filicauda

•Pipra filicauda(wire-tailed manakin (2020))(info)GCF_003945595.2

•Pipra filicauda(wire-tailed manakin (2018))(info)GCF_003945595.1

Muscicapidae

Ficedula

•Ficedula albicollis(collared flycatcher)(info)GCF_000247815.1

Oenanthe

•Oenanthe melanoleuca(Eastern black-eared wheatear (GR-GAL-2019-014 2023))(info)GCF_029582105.1

Sturnidae

Acridotheres

Acridotheres tristis

•Acridotheres tristis(common myna (bArcTri1 alternate hap 2023))(info)GCA_027559525.1

•Acridotheres tristis(common myna (bArcTri1 primary hap 2023))(info)GCA_027559615.1

Sturnus

•Sturnus vulgaris(common starling)(info)GCF_001447265.1

Turdidae

Erithacus

Erithacus rubecula

•Erithacus rubecula(European robin (alternate hap 2021))(info)GCA_903797565.2

•Erithacus rubecula(European robin (primary hap 2021))(info)GCA_903797595.2

Catharus

Catharus ustulatus

•Catharus ustulatus(Swainson's thrush (bCatUst1 v2 alternate hap 2020))(info)GCA_009819505.2

•Catharus ustulatus(Swainson's thrush (v2 primary hap 2020))(info)GCF_009819885.2

•Catharus ustulatus(Swainson's thrush (bCatUst1 v1 alternate hap 2019))(info)GCA_009819505.1

•Catharus ustulatus(Swainson's thrush (v1 primary hap 2019))(info)GCF_009819885.1

Meliphagoidea

Maluridae

Malurus

•Malurus melanocephalus(red-backed fairy wren (Western Australia 2023))(info)GCF_030028575.1

Acanthisittidae

Acanthisitta

Acanthisitta chloris

•Acanthisitta chloris(rifleman (bAcaChl1 alternate hap 2021))(info)GCA_016880875.1

•Acanthisitta chloris(rifleman (primary hap 2021))(info)GCA_016904835.1

•Acanthisitta chloris(rifleman (BGI 2014))(info)GCF_000695815.1

Tyrannidae

Myiozetetes

•Myiozetetes cayanensis(rusty-margined flycatcher (MyiCay16 2022))(info)GCF_022539395.1

Empidonax

•Empidonax traillii(willow flycatcher)(info)GCF_003031625.1

Thamnophilidae

Pithys

Pithys albifrons

•Pithys albifrons albifrons(white-plumed antbird (INPA30051 2025))(info)GCF_047495875.1

Willisornis

Willisornis vidua

•Willisornis vidua(Xingu scale-backed antbird (hap1 2024))(info)GCA_045364795.1

•Willisornis vidua(Xingu scale-backed antbird (hap2 2024))(info)GCA_045364805.1

Cinclidae

Cinclus

Cinclus cinclus

•Cinclus cinclus(white-throated dipper (primary hap 2023 genbank))(info)GCA_963662255.1

•Cinclus cinclus(white-throated dipper (primary hap 2023 refseq))(info)GCF_963662255.1

Falconiformes

Falconidae

Falco

•Falco sparverius(American kestrel (FMNH 100283 2023))(info)GCA_034782035.1

Falco rusticolus

•Falco rusticolus(gyrfalcon (bFalRus1 alternate hap 2020))(info)GCA_015220155.1

•Falco rusticolus(gyrfalcon (primary hap 2020))(info)GCF_015220075.1

Falco biarmicus

•Falco biarmicus(lanner falcon (bFalBia1 alternate hap 2022))(info)GCA_023634305.1

•Falco biarmicus(lanner falcon (bFalBia1 primary hap 2022 refseq))(info)GCF_023638135.1

•Falco biarmicus(lanner falcon (bFalBia1 primary hap 2022 genbank))(info)GCA_023638135.1

Falco naumanni

•Falco naumanni(lesser kestrel (alternate hap 2021))(info)GCA_017639645.1

•Falco naumanni(lesser kestrel (v2 2021))(info)GCF_017639655.2

•Falco naumanni(lesser kestrel (v1 2021))(info)GCF_017639655.1

Falco punctatus

•Falco punctatus(Mauritius kestrel (alternate hap 2023))(info)GCA_963210275.1

•Falco punctatus(Mauritius kestrel (primary hap 2023))(info)GCA_963210335.1

Falco peregrinus

•Falco peregrinus(peregrine falcon (bFalPer1 alternate hap 2022))(info)GCA_023634185.1

•Falco peregrinus(peregrine falcon (bFalPer1 primary hap 2022 refseq))(info)GCF_023634155.1

•Falco peregrinus(peregrine falcon (BGI 2013))(info)GCF_000337955.1

•Falco peregrinus(peregrine falcon (bFalPer1 primary hap 2022 genbank))(info)GCA_023634155.1

Falco cherrug

•Falco cherrug(Saker falcon (bFalChe1 alternate hap 2022))(info)GCA_023634115.1

•Falco cherrug(Saker falcon (BGI 2013))(info)GCF_000337975.1

•Falco cherrug(Saker falcon (primary hap 2022 refseq))(info)GCF_023634085.1

•Falco cherrug(Saker falcon (bFalChe1 primary hap 2022 genbank))(info)GCA_023634085.1

Psittaciformes

Psittacidae

Pezoporus

•Pezoporus flaviventris(bird P.flaviventris (CSIRO_AGI_PZ_B2104156 2023))(info)GCF_033815535.1

•Pezoporus wallicus(ground parrot (Strahan ANWC-B61680 2023))(info)GCF_028554395.1

•Pezoporus occidentalis(night parrot (Australia 2023))(info)GCF_034315485.1

Ara

Ara ararauna

•Ara ararauna(blue-and-yellow macaw (hap1 2023))(info)GCA_028858755.1

•Ara ararauna(blue-and-yellow macaw (hap2 2023))(info)GCA_028858555.1

Amazona

Amazona aestiva

•Amazona aestiva(blue-fronted amazon (AMXYW 2021))(info)GCA_017639355.1

•Amazona aestiva(blue-fronted amazon (FVVF132 2015))(info)GCA_001420675.1

•Amazona vittata(Puerto Rican parrot (LU 182127 2020))(info)GCA_000332375.2

Amazona ochrocephala

•Amazona ochrocephala(yellow-crowned parrot (bAmaOch1hap1 2024))(info)GCA_039720435.1

•Amazona ochrocephala(yellow-crowned parrot (bAmaOch1hap2 2024))(info)GCA_039720425.1

Neopsephotus

•Neopsephotus bourkii(Bourke's parrot (Australia Nb327-2 2023))(info)GCF_033783945.1

Guaruba

Guaruba guarouba

•Guaruba guarouba(golden parakeet (hap1 2024))(info)GCA_045345405.1

•Guaruba guarouba(golden parakeet (hap2 2024))(info)GCA_045519325.1

Psittacus

•Psittacus erithacus(grey parrot (MU2MI4XJKV 2020))(info)GCA_009867235.1

Anodorhynchus

•Anodorhynchus hyacinthinus(hyacinth macaw (LEKZKR9XQ3 2022))(info)GCA_009936445.2

Strigops

Strigops habroptila

•Strigops habroptila(kakapo (Jane alternate hap 2019))(info)GCA_004011185.1

•Strigops habroptila(kakapo (v2 Jane 2020 refseq))(info)GCF_004027225.2

•Strigops habroptila(kakapo (Jane v2 2020 genbank))(info)GCA_004027225.2

•Strigops habroptila(kakapo (Jane v1 2019))(info)GCF_004027225.1

Nestor

•Nestor notabilis(kea)(info)GCF_000696875.1

Psittacula

Psittacula echo

•Psittacula echo(Mauritius parakeet (alternate hap 2023))(info)GCA_963243765.1

•Psittacula echo(Mauritius parakeet (primary hap 2023))(info)GCA_963264785.1

Myiopsitta

•Myiopsitta monachus(monk parakeet)(info)GCA_017639245.1

Aratinga

•Aratinga solstitialis(sun parakeet (2019))(info)GCA_902168055.1

Lathamus

Lathamus discolor

•Lathamus discolor(swift parrot (hap1 2024))(info)GCF_037157495.1

•Lathamus discolor(Swift parrot (hap2 2024))(info)GCA_037157625.1

Psittaculidae

Melopsittacus

Melopsittacus undulatus

•Melopsittacus undulatus(budgerigar (maternal 2020))(info)GCA_012275265.1

•Melopsittacus undulatus(budgerigar (maternal Z 2020 refseq))(info)GCF_012275295.1

•Melopsittacus undulatus(budgerigar (paternal hap 2020))(info)GCA_012275275.1

•Melopsittacus undulatus(budgerigar (v6.3 2021 WashU))(info)GCF_000238935.1

•Melopsittacus undulatus(budgerigar (maternal Z 2020 genbank))(info)GCA_012275295.1

•Cariama cristata(red-legged seriema (alternate hap 2019))(info)GCA_009819485.1

•Cariama cristata(red-legged seriema (primary hap 2019))(info)GCA_009819825.1

•Cariama cristata(red-legged seriema (BGI_N322 2014 BGI))(info)GCF_000690535.1

•Haliaeetus leucocephalus(bald eagle)(info)GCF_000737465.1

Haliaeetus albicilla

•Haliaeetus albicilla(white-tailed eagle (BGI_N329 2014))(info)GCF_000691405.1

•Haliaeetus albicilla(white-tailed eagle (bHalAlb1.1 alternate hap 2022))(info)GCA_947461935.1

•Haliaeetus albicilla(white-tailed eagle (primary hap 2022 refseq))(info)GCF_947461875.1

•Haliaeetus albicilla(white-tailed eagle (primary hap 2022 genbank))(info)GCA_947461875.1

Buteo

Buteo buteo

•Buteo buteo(common buzzard (bButBut1.hap1.1 2024 refseq))(info)GCF_964188355.1

•Buteo buteo(common buzzard (bButBut1.hap2.1 2024))(info)GCA_964188375.1

•Buteo buteo(common buzzard (bButBut1.hap1.1 2024))(info)GCA_964188355.1

Morphnus

Morphnus guianensis

•Morphnus guianensis(crested eagle (hap1 2024))(info)GCA_045345505.1

•Morphnus guianensis(crested eagle (hap2 2024))(info)GCA_045345515.1

Aquila

Aquila chrysaetos

Aquila chrysaetos chrysaetos

•Aquila chrysaetos chrysaetos(golden eagle (v1.4 2021))(info)GCF_900496995.4

•Aquila chrysaetos chrysaetos(golden eagle (v1.4 alternate hap 2021))(info)GCA_902153765.2

•Aquila chrysaetos chrysaetos(golden eagle (v1.2 alternate hap 2019))(info)GCA_902153765.1

•Aquila chrysaetos chrysaetos(golden eagle (v1.2 2019))(info)GCF_900496995.1

Harpia

Harpia harpyja

•Harpia harpyja(Harpy eagle (bHarHar1 alternate hap 2022))(info)GCA_026419925.1

•Harpia harpyja(Harpy eagle (primary hap 2022 refseq))(info)GCF_026419915.1

•Harpia harpyja(Harpy eagle (primary hap 2022 genbank))(info)GCA_026419915.1

Parabuteo

•Parabuteo unicinctus(Harris's hawk (TCWC 14879 2022))(info)GCA_025311615.1

Gypaetus

Gypaetus barbatus

•Gypaetus barbatus(lammergeier (bGypBar2 alternate hap 2023))(info)GCA_028017155.1

•Gypaetus barbatus(lammergeier (bGypBar2 primary hap 2023))(info)GCA_028022735.1

Astur

Astur gentilis

•Astur gentilis(northern goshawk (bAccGen1 v1 alternate hap 2022))(info)GCA_929447715.1

•Astur gentilis(northern goshawk (v2 primary hap 2022 genbank))(info)GCA_929443795.2

•Astur gentilis(northern goshawk (v1 primary hap 2022 refseq))(info)GCF_929443795.1

Cathartidae

Gymnogyps

Gymnogyps californianus

•Gymnogyps californianus(California condor (v2 813 2022 refseq))(info)GCF_018139145.2

•Gymnogyps californianus(California condor (v1 813 2021 genbank))(info)GCA_018139145.1

Sarcoramphus

Sarcoramphus papa

•Sarcoramphus papa(king vulture (hap1 2024))(info)GCA_037962945.1

•Sarcoramphus papa(king vulture (hap2 2024))(info)GCA_037950955.1

•Tyto alba(barn owl (U. Lausanne 2021))(info)GCF_018691265.1

•Tyto alba(barn owl BGI_N341 (2014))(info)GCF_000687205.1

•Tyto alba alba(barn owl (2020))(info)GCF_902150015.1

Strigidae

Athene

•Athene cunicularia(burrowing owl)(info)GCF_003259725.1

Athene noctua

•Athene noctua(little owl (bAthNoc1.hap1.1 2025))(info)GCF_965140245.1

•Athene noctua(little owl (hap1.1 2025))(info)GCA_965140245.1

•Athene noctua(little owl (hap2.1 2025))(info)GCA_965140185.1

Otus

•Otus sunia(Oriental scops-owl (oso-nibr-517 2020))(info)GCA_010365825.1

Strix

•Strix occidentalis(spotted owl (hap2 2023))(info)GCA_030819815.1

Strix aluco

•Strix aluco(Tawny owl (bStrAlu1hap1 2023))(info)GCF_031877795.1

•Strix aluco(tawny owl (hap1 2023))(info)GCA_031877795.1

•Strix aluco(tawny owl (hap2 2023))(info)GCA_031877785.1

•Strix uralensis(Ural owl (ZFMK-TIS-50842 2025))(info)GCF_047716275.1

•Pygoscelis adeliae(Adelie penguin)(info)GCF_000699105.1

Aptenodytes

•Aptenodytes forsteri(emperor penguin)(info)GCF_000699145.1

•Aptenodytes patagonicus(king penguin (2025))(info)GCF_965638725.1

Spheniscus

Spheniscus humboldti

•Spheniscus humboldti(Humboldt's penguin (bSphHub1 alternate hap 2022))(info)GCA_027474345.1

•Spheniscus humboldti(Humboldt's penguin (bSphHub1 primary hap 2022))(info)GCA_027474245.1

•Calonectris borealis(Cory's shearwater (hap1.2 2024 genbank))(info)GCA_964195595.2

•Calonectris borealis(Cory's shearwater (hap1.2 2024 refseq))(info)GCF_964195595.1

•Calonectris borealis(Cory's shearwater (hap2.2 2024))(info)GCA_964196065.2

•Calonectris borealis(Cory's shearwater (hap1.1 2024))(info)GCA_964195595.1

•Calonectris borealis(Cory's shearwater (hap2.1 2024))(info)GCA_964196065.1

Fulmarus

•Fulmarus glacialis(northern fulmar)(info)GCF_000690835.1

Pelecaniformes

Threskiornithidae

Nipponia

•Nipponia nippon(crested ibis (BGI_Y956 2014))(info)GCF_000708225.1

Platalea

Platalea leucorodia

•Platalea leucorodia(Eurasian spoonbill (hap1.1 2025))(info)GCA_965183815.1

•Platalea leucorodia(Eurasian spoonbill (hap2.1 2025))(info)GCA_965183785.1

Theristicus

Theristicus caerulescens

•Theristicus caerulescens(plumbeous ibis (bTheCae1 alternate hap 2021))(info)GCA_020745805.1

•Theristicus caerulescens(plumbeous ibis (primary hap 2021))(info)GCA_020745775.1

Pelecanidae

Pelecanus

Pelecanus crispus

•Pelecanus crispus(Dalmatian pelican (alternate hap 2023))(info)GCA_030449815.1

•Pelecanus crispus(Dalmatian pelican (BGI_N334 2014))(info)GCF_000687375.1

•Pelecanus crispus(Dalmatian pelican (primary hap 2023 genbank))(info)GCA_030463565.1

•Pelecanus crispus(Dalmatian pelican (primary hap 2023 refseq))(info)GCF_030463565.1

Ardeidae

Ardea

•Ardea alba(great egret (B10K-D-DBG-74 2024))(info)GCA_045788385.1

Egretta

•Egretta garzetta(little egret)(info)GCF_000687185.1

Suliformes

Phalacrocoracidae

Phalacrocorax

Phalacrocorax aristotelis

•Phalacrocorax aristotelis(European shag (alternate hap 2023))(info)GCA_949628205.1

•Phalacrocorax aristotelis(European shag (primary hap 2023 genbank))(info)GCA_949628215.1

•Phalacrocorax aristotelis(European shag (primary hap 2023 refseq))(info)GCF_949628215.1

Phalacrocorax carbo

•Phalacrocorax carbo(great cormorant (BGI_N336 2014))(info)GCF_000708925.1

•Phalacrocorax carbo(great cormorant (primary hap 2024 genbank))(info)GCA_963921805.1

•Phalacrocorax carbo(great cormorant (primary hap 2024 refseq))(info)GCF_963921805.1

Sulidae

Morus

Morus bassanus

•Morus bassanus(northern gannet (hap1 2023))(info)GCA_031468805.1

•Morus bassanus(northern gannet (hap2 2023))(info)GCA_031468815.1

•Ciconia maguari(maguari stork (bCicMag1 alternate hap 2021))(info)GCA_017639665.1

•Ciconia maguari(maguari stork (primary hap 2021))(info)GCA_017639555.1

•Ciconia boyciana(Oriental stork (2023))(info)GCF_034638445.1

Mycteria

•Mycteria americana(wood stork (Jacksonville Zoo and Gardens JAX WOST 10 2024))(info)GCF_035582795.1

•Gavia stellata(red-throated loon (BGI_N328 2014))(info)GCF_000690875.1

•Gavia stellata(red-throated loon (hap1 2023))(info)GCA_030936125.1

•Gavia stellata(red-throated loon (hap2 2023 refseq))(info)GCF_030936135.1

•Gavia stellata(red-throated loon (hap2 2023 genbank))(info)GCA_030936135.1

Phoenicopterus ruber ruber

•Phoenicopterus ruber ruber(American flamingo (alternate hap 2019))(info)GCA_009819805.1

•Phoenicopterus ruber ruber(American flamingo (primary hap 2019))(info)GCA_009819775.1

•Calypte anna(Anna's hummingbird (alternate hap BGI_N300 2018))(info)GCA_003957575.1

•Calypte anna(Anna's hummingbird (BGI_N300 2019 refseq))(info)GCF_003957555.1

•Calypte anna(Anna's hummingbird (BGI_N300 2019 genbank))(info)GCA_003957555.2

Phaethornis

Phaethornis superciliosus

•Phaethornis superciliosus(long-tailed hermit (PSU5 alternate hap 2022))(info)GCA_023637925.1

•Phaethornis superciliosus(long-tailed hermit (v2 PSU5 primary hap 2025))(info)GCA_023637945.2

•Phaethornis superciliosus(long-tailed hermit (v1 PSU5 primary hap 2022))(info)GCA_023637945.1

Heliangelus

Heliangelus exortis

•Heliangelus exortis(tourmaline sunangel (hap1 2024 refseq))(info)GCF_036169615.1

•Heliangelus exortis(tourmaline sunangel (hap2 2024))(info)GCA_036172335.1

•Heliangelus exortis(tourmaline sunangel (hap1 2024 genbank))(info)GCA_036169615.1

•Chaetura pelagica(chimney swift (M959 v1.1 2014))(info)GCF_000747805.2

•Chaetura pelagica(chimney swift (M959 v1.0 2014))(info)GCF_000747805.1

Apus

Apus apus

•Apus apus(common swift (bApuApu2 alternate hap 2021))(info)GCA_020740585.1

•Apus apus(common swift (primary hap 2021 refseq))(info)GCF_020740795.1

•Apus apus(common swift (bApuApu2 2021 genbank))(info)GCA_020740795.1

Hemiprocninae

Hemiprocne

Hemiprocne comata

•Hemiprocne comata(whiskered treeswift (bHemCom1 alternate hap 2021))(info)GCA_020745695.1

•Hemiprocne comata(whiskered treeswift (primary hap 2021))(info)GCA_020745705.1

•Aegotheles albertisi(bird A.albertisi (hap1 2024))(info)GCA_039906565.1

•Aegotheles albertisi(bird A.albertisi (hap2 2024))(info)GCA_039906465.1

Caprimulgidae

Antrostomus

Antrostomus carolinensis

•Antrostomus carolinensis(chuck-will's-widow (BGI_N321 v2 2014))(info)GCF_000700745.2

•Antrostomus carolinensis(chuck-will's-widow (BGI_N321 v1 2014))(info)GCF_000700745.1

Caprimulginae

Caprimulgus

Caprimulgus europaeus

•Caprimulgus europaeus(Eurasian nightjar (alternate hap 2021))(info)GCA_907165095.1

•Caprimulgus europaeus(Eurasian nightjar (primary hap 2021))(info)GCA_907165065.1

Podargidae

Podargus

Podargus strigoides

•Podargus strigoides(tawny frogmouth (bPodStr1 alternate hap 2023))(info)GCA_028020675.1

•Podargus strigoides(tawny frogmouth (bPodStr1 primary hap 2023))(info)GCA_028020825.1

•Nyctibius grandis(great potoo (bNycGra1 alternate hap 2020))(info)GCA_013368595.1

•Nyctibius grandis(great potoo (primary hap 2020 genbank))(info)GCA_013368605.1

•Nyctibius grandis(great potoo (primary hap 2020 refseq))(info)GCF_013368605.1

•Patagioenas fasciata(band-tailed pigeon (hap1 2025))(info)GCF_037038585.1

•Patagioenas fasciata(band-tailed pigeon (v1 hap2 2024 refseq))(info)GCF_036971685.1

•Patagioenas fasciata(band-tailed pigeon (v2 hap2 2025))(info)GCA_036971685.2

•Patagioenas fasciata(band-tailed pigeon (v1 hap2 2024 genbank))(info)GCA_036971685.1

Streptopelia

Streptopelia decaocto

•Streptopelia decaocto(Eurasian collared-dove (bStrDea1.hap1.1 2024))(info)GCA_964273445.1

•Streptopelia decaocto(Eurasian collared-dove (bStrDea1.hap2.1 2024))(info)GCA_964273585.1

Streptopelia turtur

•Streptopelia turtur(European turtle dove (v1.2 2021))(info)GCA_901699155.2

•Streptopelia turtur(European turtle dove (v1.2 alternate hap 2021))(info)GCA_901699165.2

•Streptopelia turtur(European turtle dove (v1.1 primary hap 2019))(info)GCA_901699155.1

•Streptopelia turtur(European turtle dove (v1.1 alternate hap 2019))(info)GCA_901699165.1

Caloenas

Caloenas nicobarica

•Caloenas nicobarica(Nicobar pigeon (hap1 2024 genbank))(info)GCA_036013445.1

•Caloenas nicobarica(Nicobar pigeon (hap1 2024 refseq))(info)GCF_036013445.1

•Caloenas nicobarica(Nicobar pigeon (hap2 2024))(info)GCA_036010745.1

Nesoenas

Nesoenas mayeri

•Nesoenas mayeri(pink pigeon (alternate hap 2023))(info)GCA_963082445.1

•Nesoenas mayeri(pink pigeon (primary hap 2023))(info)GCA_963082525.1

Columba

Columba livia

•Columba livia(rock pigeon (Danish tumbler 2013 BGI))(info)GCF_000337935.1

•Columba livia(rock pigeon (Tarim TR01 2023))(info)GCA_032719375.1

•Columba livia(rock pigeon (v2 racing homer 2024 refseq))(info)GCF_036013475.1

•Columba livia(rock pigeon (v2 racing homer maternal hap 2024))(info)GCA_036010775.2

•Columba livia(rock pigeon (v1 racing homer maternal hap 2024))(info)GCA_036010775.1

•Columba livia(rock pigeon (v1 racing homer paternal W 2024))(info)GCA_036013475.1

•Columba livia(rock pigeon (v2 racing homer 2024 genbank))(info)GCA_036013475.2

Mesitornithiformes

Mesitornithidae

Mesitornis

•Mesitornis unicolor(brown roatelo)(info)GCF_000695765.1

•Pterocles gutturalis(yellow-throated sandgrouse (alternate hap 2019))(info)GCA_009769505.1

•Pterocles gutturalis(yellow-throated sandgrouse (primary hap 2019))(info)GCA_009769525.1

•Pterocles gutturalis(yellow-throated sandgrouse (BGI_N339 2014 BGI))(info)GCF_000699245.1

Charadriiformes

Laridae

Chroicocephalus

Chroicocephalus ridibundus

•Chroicocephalus ridibundus(black-headed gull (Kunming 2023))(info)GCA_030820635.1

•Chroicocephalus ridibundus(black-headed gull (primary hap 2024 genbank))(info)GCA_963924245.1

•Chroicocephalus ridibundus(black-headed gull (primary hap 2024 refseq))(info)GCF_963924245.1

Rissa

Rissa tridactyla

•Rissa tridactyla(black-legged kittiwake (bRisTri1 2023 refseq))(info)GCF_028500815.1

•Rissa tridactyla(black-legged kittiwake (bRisTri1.mat 2023))(info)GCA_028501385.1

•Rissa tridactyla(black-legged kittiwake (bRisTri1.patW 2023 genbank))(info)GCA_028500815.1

Sterna

Sterna hirundo

•Sterna hirundo(common tern (alternate hap 2019))(info)GCA_009819645.1

•Sterna hirundo(common tern (primary hap 2019))(info)GCA_009819605.1

Larus

Larus argentatus

•Larus argentatus(herring gull (hap1 2024))(info)GCA_964417175.1

•Larus argentatus(herring gull (hap2 2024))(info)GCA_964417125.1

•Larus fuscus(lesser black-backed gull (primary hap 2024))(info)GCA_963932225.1

Larus michahellis

•Larus michahellis(yellow-legged gull (bLarMic1.1_alternate_haplotype 2024))(info)GCA_964199725.1

•Larus michahellis(yellow-legged gull (primary hap 2024))(info)GCA_964199755.1

•Larus michahellis(yellow-legged gull (primary hap 2024))(info)GCF_964199755.1

Scolopacidae

Numenius

Numenius arquata

•Numenius arquata(Eurasian curlew (bNumArq3.hap1.1 2024))(info)GCF_964106895.1

•Numenius arquata(Eurasian curlew (hap1 2024))(info)GCA_964106895.1

•Numenius arquata(Eurasian curlew (hap2 2024))(info)GCA_964059295.1

Calidris

•Calidris pugnax(ruff)(info)GCF_001431845.1

Charadriidae

Pluvialis

Pluvialis apricaria

•Pluvialis apricaria(European golden plover (primary hap 2021))(info)GCA_017639485.1

•Pluvialis apricaria(Eurpoean golden plover (bPluApr1 alternate hap 2021))(info)GCA_017639475.1

Charadrius

•Charadrius vociferus(killdeer)(info)GCF_000708025.1

Vanellus

•Vanellus vanellus(northern lapwing (hap1.1 2025))(info)GCA_965231255.1

Alcidae

Alca

Alca torda

•Alca torda(razorbill (2006_11_07_Graehlm_vinge_78 2019))(info)GCA_008658365.1

•Alca torda(razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019))(info)GCA_008658355.1

Gruiformes

Rallidae

Laterallus

Laterallus jamaicensis

Laterallus jamaicensis coturniculus

•Laterallus jamaicensis coturniculus(California black rail (168171201 alternate hap 2022))(info)GCA_022605925.1

•Laterallus jamaicensis coturniculus(California black rail (168171201 primary hap 2022))(info)GCA_022605575.1

Gallinula

Gallinula chloropus

•Gallinula chloropus(common moorhen (bGalChl1.hap1.1 2024))(info)GCA_964237585.1

•Gallinula chloropus(common moorhen (bGalChl1.hap2.1 2024))(info)GCA_964237395.1

Porphyrio

Porphyrio hochstetteri

•Porphyrio hochstetteri(South Island takahe (alternate hap 2021))(info)GCA_020801775.1

•Porphyrio hochstetteri(South Island takahe (primary hap 2021))(info)GCA_020800305.1

Rallus

Rallus limicola

•Rallus limicola(Virginia rail (171378401 alternate hap 2022))(info)GCA_022605895.1

•Rallus limicola(Virginia rail (171378401 primary hap 2022))(info)GCA_022605955.1

Gruidae

Balearica

Balearica regulorum

Balearica regulorum gibbericeps

•Balearica regulorum gibbericeps(East African grey crowned-crane)(info)GCF_000709895.1

•Balearica regulorum gibbericeps(East African grey crowned-crane (alternate hap 2020))(info)GCA_011004865.1

•Balearica regulorum gibbericeps(East African grey crowned-crane (primary hap 2020 genbank))(info)GCA_011004875.1

•Balearica regulorum gibbericeps(East African grey crowned-crane (primary hap 2020 refseq))(info)GCF_011004875.1

Grus

•Grus grus(Eurasian crane (hap1 2024))(info)GCA_964106855.1

Grus americana

•Grus americana(whooping crane (maternal hap 2023 refseq))(info)GCF_028858705.1

•Grus americana(whooping crane (paternal hap 2023))(info)GCA_028858595.1

•Grus americana(whooping crane (maternal hap 2023 genbank))(info)GCA_028858705.1

•Phaenicophaeus curvirostris(chestnut-breasted malkoha (KB17595 2023))(info)GCF_032191515.1

Cuculus

Cuculus canorus

•Cuculus canorus(common cuckoo (bCucCan1 alternate hap 2021))(info)GCA_017976305.1

•Cuculus canorus(common cuckoo (bCucCan1 primary hap 2021 refseq))(info)GCF_017976375.1

•Cuculus canorus(common cuckoo (bCucCan1 primary hap 2021 genbank))(info)GCA_017976375.1

•Cuculus canorus(common cuckoo (BGI 2014))(info)GCF_000709325.1

Otidiformes

Otididae

Chlamydotis

Chlamydotis macqueenii

•Chlamydotis macqueenii(Macqueen's bustard (BGI_N324 2014))(info)GCF_000695195.1

•Chlamydotis macqueenii(Macqueen's bustard (maternal hap 2024))(info)GCA_036417535.1

•Chlamydotis macqueenii(Macqueen's bustard (paternal 2024))(info)GCA_036418225.1

Musophagiformes

Musophagidae

Tauraco

Tauraco erythrolophus

•Tauraco erythrolophus(red-crested turaco (alternate hap 2019))(info)GCA_009764505.1

•Tauraco erythrolophus(red-crested turaco (primary hap 2019))(info)GCA_009769465.1

•Tauraco erythrolophus(red-crested turaco (2014 BGI))(info)GCF_000709365.1

•Opisthocomus hoazin(hoatzin (BGI_N306 2014))(info)GCF_000692075.1

•Opisthocomus hoazin(hoatzin (hap1 2023 genbank))(info)GCA_030867145.1

•Opisthocomus hoazin(hoatzin (hap1 2023 refseq))(info)GCF_030867145.1

•Opisthocomus hoazin(hoatzin (hap2 2023))(info)GCA_030867165.1

•Rhynochetos jubatus(kagu (bRhyJub1 alternate hap 2023))(info)GCA_027595965.1

•Rhynochetos jubatus(kagu (bRhyJub1 primary hap 2023))(info)GCA_027574665.1

Eurypygidae

Eurypyga

•Eurypyga helias(sunbittern)(info)GCF_000690775.1

•Phaethon aethereus(red-billed tropicbird (maternal hap 2024))(info)GCA_964289735.1

•Phaethon aethereus(red-billed tropicbird (paternal hap 2024))(info)GCA_964289755.1

•Phaethon lepturus(white-tailed tropicbird)(info)GCF_000687285.1

Excalfactoria chinensis

•Excalfactoria chinensis(bird E.chinensis (hap1 2024))(info)GCA_039878515.1

•Excalfactoria chinensis(bird E.chinensis (hap2 2024))(info)GCA_039878825.1

•Excalfactoria chinensis(king quail (bCotChi1hap2 2024))(info)GCF_039878825.1

Phasianinae

Crossoptilon

•Crossoptilon mantchuricum(brown eared-pheasant)(info)GCA_019593555.1

Gallus

Gallus gallus

•Gallus gallus(chicken (Cobb bGalGal5 alternate hap 2022))(info)GCA_027408205.1

•Gallus gallus(chicken (Cobb bGalGal5 primary hap 2022))(info)GCA_027408225.1

•Gallus gallus(chicken (GRCg6a 2018))(info)GCF_000002315.6

•Gallus gallus(chicken (Huxu 2023))(info)GCA_024206055.2

•Gallus gallus(chicken (Ross bGalGal4 alternate hap 2022))(info)GCA_027408255.1

•Gallus gallus(chicken (Ross bGalGal4 primary hap 2023))(info)GCA_027557775.1

•Gallus gallus(chicken (Silkie 2023))(info)GCA_034509865.1

•Gallus gallus(chicken (Wuding W17 2024))(info)GCA_030914275.2

•Gallus gallus(chicken white leghorn layer X broiler (v2 broiler haplotype 2021 2021))(info)GCF_016699485.2

•Gallus gallus(white leghorn X broiler chicken (v2 leghorn haplotype 2021))(info)GCF_016700215.2

•Gallus gallus(white leghorn X broiler chicken (v1 leghorn haplotype v1 2021))(info)GCF_016700215.1

Chrysolophus

•Chrysolophus pictus(golden pheasant)(info)GCA_003413605.1

Pavo

•Pavo muticus(green peafowl)(info)GCA_016647715.1

Phasianus

•Phasianus colchicus(ring-necked pheasant)(info)GCF_004143745.1

Tetraoninae

Tympanuchus

Tympanuchus cupido

•Tympanuchus cupido pinnatus(greater prairie chicken)(info)GCA_001870855.1

•Tympanuchus pallidicinctus(lesser prairie-chicken (F22 2022))(info)GCF_026119805.1

Centrocercus

•Centrocercus urophasianus(greater sage-grouse)(info)GCF_019232065.1

Lagopus

Lagopus muta

•Lagopus muta(rock ptarmigan (bLagMut1 alternate hap 2022))(info)GCA_023344045.1

•Lagopus muta(rock ptarmigan (primary hap 2022 refseq))(info)GCF_023343835.1

•Lagopus muta(rock ptarmigan (primary hap 2022 genbank))(info)GCA_023343835.1

•Lagopus leucura(white-tailed ptarmigan)(info)GCF_019238085.1

Tetrao

Tetrao urogallus

•Tetrao urogallus(western capercaillie (alternate hap 2023))(info)GCA_951394355.1

•Tetrao urogallus(western capercaillie (primary hap 2023))(info)GCA_951394365.1

Perdicinae

Coturnix

Coturnix japonica

•Coturnix japonica(Japanese quail)(info)GCF_001577835.2

•Coturnix japonica(Japanese quail)(info)GCF_001577835.1

Alectoris

•Alectoris rufa(red-legged partridge)(info)GCA_019345075.1

Meleagridinae

Meleagris

Meleagris gallopavo

•Meleagris gallopavo(turkey (Aviagen NT-WF06-2002-E0010 2014))(info)GCF_000146605.3

•Meleagris gallopavo(turkey (WU_HG_1 2021))(info)GCA_905368555.1

Odontophoridae

Callipepla

Callipepla californica

Callipepla californica brunnescens

•Callipepla californica brunnescens(California quail (MVZ:Bird:193975 alternate hap 2022))(info)GCA_023055725.1

•Callipepla californica brunnescens(California quail (MVZ:Bird:193975 primary hap 2022))(info)GCA_023055505.1

Cyrtonyx

•Cyrtonyx montezumae(Montezuma quail (F1298 2024))(info)GCF_038088225.1

Colinus

•Colinus virginianus(northern bobwhite)(info)GCA_008692595.2

Numididae

Numida

•Numida meleagris(helmeted guineafowl)(info)GCF_002078875.1

•Cygnus atratus(black swan (v2 Queensland, Australia AKBS03 2022))(info)GCF_013377495.2

•Cygnus atratus(black swan (v1 Queensland, Australia AKBS03 2020))(info)GCF_013377495.1

Cygnus olor

•Cygnus olor(mute swan (bCygOlo1 v2 alternate hap 2021))(info)GCA_009769485.2

•Cygnus olor(mute swan (v2 primary hap 2021))(info)GCF_009769625.2

•Cygnus olor(mute swan (bCygOlo1 v1 alternate hap 2019))(info)GCA_009769485.1

•Cygnus olor(mute swan (v1 primary hap 2019))(info)GCA_009769625.1

•Cygnus columbianus(tundra swan (primary hap 2025))(info)GCA_965151615.1

Branta

Branta canadensis

•Branta canadensis(Canada goose (primary hap 2025))(info)GCA_965231335.1

•Branta canadensis(Canada goose (SJ_97 2019))(info)GCA_006130075.1

Anser

Anser anser

•Anser anser(Domestic goose (bAnsAns1.hap1.1 2024))(info)GCA_964211835.1

•Anser anser(Domestic goose (bAnsAns1.hap2.1 2024))(info)GCA_964211785.1

•Anser brachyrhynchus(pink-footed goose (primary hap 2024))(info)GCA_964034855.1

Anser cygnoides

•Anser cygnoides(Swan (goose HZ-2024a 2024))(info)GCF_040182565.1

•Anser cygnoides(swan goose (Sichuan white goose 2017))(info)GCF_002166845.1

•Anser cygnoides(swan goose (Tianfu 2020))(info)GCA_013030995.1

Anatinae

Mergus

Mergus octosetaceus

•Mergus octosetaceus(Brazilian merganser (hap1 2024))(info)GCA_036873955.1

•Mergus octosetaceus(Brazilian merganser (hap2 2024))(info)GCA_036850655.1

Bucephala

•Bucephala clangula(common goldeneye (primary hap 2024))(info)GCA_964059595.1

Clangula

•Clangula hyemalis(long-tailed duck (primary hap 2024))(info)GCA_963989345.1

Anas

Anas platyrhynchos

•Anas platyrhynchos(mallard (CAU_Wild1.0 2019))(info)GCA_008746955.1

•Anas platyrhynchos(mallard (hap1 2024))(info)GCA_964188345.1

•Anas platyrhynchos(mallard (hap2 2024))(info)GCA_964188335.1

•Anas platyrhynchos(mallard (Pekin duck Z2 2020 Zhejiang U))(info)GCF_015476345.1

•Anas platyrhynchos(mallard (Pekin duck ZD024472 2025))(info)GCF_047663525.1

•Anas platyrhynchos(mallard PBH1.5)(info)GCF_003850225.1

•Anas platyrhynchos platyrhynchos(mallard (Pekin duck 2017))(info)GCA_002743455.1

Anas acuta

•Anas acuta(northern pintail (primary hap 2024 genbank))(info)GCA_963932015.1

•Anas acuta(northern pintail (primary hap 2024 refseq))(info)GCF_963932015.1

Oxyura

•Oxyura jamaicensis(ruddy duck)(info)GCF_011077185.1

Aythyinae

Aythya

Aythya ferina

•Aythya ferina(common pochard (bAytFer1.hap1.1 2024))(info)GCA_964211825.1

•Aythya ferina(common pochard (bAytFer1.hap2.1 2024))(info)GCA_964211795.1

Aythya marila

•Aythya marila(greater scaup (hap1 2025))(info)GCA_965140915.1

•Aythya marila(greater scaup (hap2 2025))(info)GCA_965140925.1

Aythya fuligula

•Aythya fuligula(tufted duck (2019))(info)GCF_009819795.1

•Aythya fuligula(tufted duck (alternate hap 2019))(info)GCA_009819845.1

Netta

•Netta rufina(red-crested pochard (primary hap 2024))(info)GCA_964035555.1

•Struthio camelus(African ostrich (bStrCam1hap1 2024))(info)GCF_040807025.1

•Struthio camelus(African ostrich (bStrCam1hap2 2024))(info)GCA_040807015.1

•Struthio camelus australis(African ostrich)(info)GCF_000698965.1

•Apteryx mantelli(North Island brown kiwi (hap1 2024 genbank))(info)GCA_036417845.1

•Apteryx mantelli(North Island brown kiwi (hap1 2024 refseq))(info)GCF_036417845.1

•Apteryx mantelli(North Island brown kiwi (hap2 2024))(info)GCA_036417975.1

•Apteryx mantelli mantelli(brown kiwi)(info)GCF_001039765.1

•Apteryx rowi(Okarito brown kiwi)(info)GCF_003343035.1

Tinamiformes

Tinamidae

Nothoprocta

•Nothoprocta perdicaria(Chilean tinamou)(info)GCF_003342845.1

Eudromia

Eudromia elegans

•Eudromia elegans(elegant crested-tinamou (YG026_01 alternate hap 2025))(info)GCA_047922975.1

•Eudromia elegans(elegant crested-tinamou (YG026_01 primary hap 2025))(info)GCA_047922985.1

Tinamus

•Tinamus guttatus(white-throated tinamou)(info)GCF_000705375.1

Casuariiformes

Dromaiidae

Dromaius

Dromaius novaehollandiae

•Dromaius novaehollandiae(emu (2018))(info)GCF_003342905.1

•Dromaius novaehollandiae(emu (hap1 2024))(info)GCF_036370855.1

•Dromaius novaehollandiae(emu (hap2 2024))(info)GCA_036417515.1

•Dromaius novaehollandiae(emu (v2 ZJU1.0 2023))(info)GCA_016128335.2

•Dromaius novaehollandiae(emu (v1 ZJU1.0 2020))(info)GCA_016128335.1

Rheiformes

Rheidae

Rhea

•Rhea americana(greater rhea)(info)GCA_003343005.1

Rhea pennata

•Rhea pennata(lesser rhea (206185 2018))(info)GCA_003342835.1

•Rhea pennata(lesser rhea (bPtePen1 alternate hap 2023))(info)GCA_028389885.1

•Rhea pennata(lesser rhea (bPtePen1 primary hap 2023 refseq))(info)GCF_028389875.1

•Rhea pennata(lesser rhea (primary hap 2023 genbank))(info)GCA_028389875.1

Alligator mississippiensis

•Alligator mississippiensis(American alligator (2023 refseq))(info)GCF_030867095.1

•Alligator mississippiensis(American alligator (KSC_2009_1 2016))(info)GCF_000281125.3

•Alligator mississippiensis(American alligator (2023 genbank))(info)GCA_030867065.1

•Alligator mississippiensis(American alligator (chrom assembly 2023 genbank))(info)GCA_030867095.1

•Alligator sinensis(Chinese alligator)(info)GCF_000455745.1

Longirostres

Crocodylidae

Crocodylus

•Crocodylus porosus(Australian saltwater crocodile)(info)GCF_001723895.1

•Gavialis gangeticus(gharial (Ggan-Ray 2016))(info)GCF_001723915.1

•Gavialis gangeticus(gharial (hap1 2023))(info)GCA_030020385.1

•Gavialis gangeticus(gharial (hap2 2023))(info)GCA_030020295.1

Chelonoidis nigra species complex

Chelonoidis abingdonii

•Chelonoidis abingdonii(Abingdon island giant tortoise (Lonesome George 2018))(info)GCF_003597395.1

•Chelonoidis abingdonii(Abingdon island giant tortoise (Lonesome George 2025))(info)GCF_003597395.2

Gopherus

Gopherus evgoodei

•Gopherus evgoodei(Goodes thornscrub tortoise (Sinaloan 2019))(info)GCF_007399415.2

•Gopherus evgoodei(Goodes thornscrub tortoise (Sinaloan alternate hap 2019))(info)GCA_007399395.1

Gopherus flavomarginatus

•Gopherus flavomarginatus(Mexican gopher tortoise (WGS:JAMKFC01 2022))(info)GCF_025201925.1

•Gopherus flavomarginatus(Mexican gopher tortoise (WGS:JAMKFD01 2022))(info)GCA_025201965.1

Emydidae

Malaclemys

Malaclemys terrapin

Malaclemys terrapin pileata

•Malaclemys terrapin pileata(diamondback terrapin (hap1 2023 refseq))(info)GCF_027887155.1

•Malaclemys terrapin pileata(diamondback terrapin (hap2 rMalTer1 2023))(info)GCA_027887205.1

•Malaclemys terrapin pileata(diamondback terrapin (hap1 2023 genbank))(info)GCA_027887155.1

Emys

Emys orbicularis

•Emys orbicularis(European pond turtle (hap1 2023 genbank))(info)GCA_028017835.1

•Emys orbicularis(European pond turtle (hap1 2023 refseq))(info)GCF_028017835.1

•Emys orbicularis(European pond turtle (hap2 rEmyOrb1 2023))(info)GCA_028017845.1

Actinemys

Actinemys marmorata

•Actinemys marmorata(Northwestern pond turtle (WTP2003 alternate hap 2022))(info)GCA_022086895.1

•Actinemys marmorata(Northwestern pond turtle (WTP2003 primary hap 2022))(info)GCA_022086475.1

Actinemys pallida

•Actinemys pallida(Southwestern pond turtle (HBS135687 alternate hap 2022))(info)GCA_023634275.1

•Actinemys pallida(Southwestern pond turtle (HBS135687 primary hap 2022))(info)GCA_023634205.1

Trachemys

Trachemys scripta

•Trachemys scripta elegans(red-eared slider turtle)(info)GCF_013100865.1

Terrapene

•Terrapene triunguis(three-toed box turtle)(info)GCF_002925995.2

Chrysemys

Chrysemys picta

Chrysemys picta bellii

•Chrysemys picta bellii(western painted turtle (hap1 R12L10 2024))(info)GCA_035221575.1

•Chrysemys picta bellii(western painted turtle (hap2 R12L10 2024))(info)GCA_035221595.1

•Chrysemys picta bellii(western painted turtle (R12L10 2023 refseq))(info)GCF_011386835.1

•Chrysemys picta bellii(western painted turtle (v5 RCT428 2020))(info)GCF_000241765.5

•Chrysemys picta bellii(western painted turtle (v303 2014))(info)GCF_000241765.3

•Chrysemys picta bellii(western painted turtle (v304 RCT428 2020))(info)GCF_000241765.4

•Pangshura tecta(Indian roofed turtle (hap1 2024))(info)GCA_045781095.1

•Pangshura tecta(Indian roofed turtle (hap2 2024))(info)GCA_045781085.1

Geoemydinae

Mauremys

•Mauremys reevesii(Reeves's turtle)(info)GCF_016161935.1

•Mauremys mutica(yellowpond turtle (Southern MM-2020 2021))(info)GCF_020497125.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap1 2025))(info)GCA_965140285.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap2 2025 refseq))(info)GCF_965140265.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap2 2025))(info)GCA_965140265.1

Lepidochelys olivacea

•Lepidochelys olivacea(Pacific ridley (hap1 2025))(info)GCA_965140295.1

•Lepidochelys olivacea(Pacific ridley (hap2 2025))(info)GCA_965140255.1

Natator

Natator depressus

•Natator depressus(flatback sea turtle (hap1 2025 refseq))(info)GCF_965152275.1

•Natator depressus(flatback sea turtle (hap2 2025))(info)GCA_965152195.1

•Natator depressus(flatback sea turtle (hap1 2025))(info)GCA_965152275.1

Chelonia

Chelonia mydas

•Chelonia mydas(green sea turtle (v2 alternate hap 2021))(info)GCA_015220195.2

•Chelonia mydas(green sea turtle (v2 primary hap 2021))(info)GCF_015237465.2

•Chelonia mydas(green sea turtle (v1 2020))(info)GCF_015237465.1

•Chelonia mydas(green sea turtle (BGI 2013))(info)GCF_000344595.1

Eretmochelys

Eretmochelys imbricata

•Eretmochelys imbricata(hawksbill sea turtle (B2_1 2023))(info)GCA_030012505.1

•Eretmochelys imbricata(hawksbill sea turtle (hap1 2025 genbank))(info)GCA_965152235.1

•Eretmochelys imbricata(hawksbill sea turtle (hap1 2025 refseq))(info)GCF_965152235.1

•Eretmochelys imbricata(hawksbill sea turtle (hap2 2025))(info)GCA_965152285.1

Caretta

Caretta caretta

•Caretta caretta(loggerhead turtle (hap1 2025 genbank))(info)GCA_965140235.1

•Caretta caretta(loggerhead turtle (hap1 2025 refseq))(info)GCF_965140235.1

•Caretta caretta(loggerhead turtle (hap2 2025))(info)GCA_965140275.1

•Caretta caretta(loggerhead turtle (SJ_126:Eziel1 2022))(info)GCF_023653815.1

Dermochelyidae

Dermochelys

Dermochelys coriacea

•Dermochelys coriacea(leatherback sea turtle (v2 alternate hap 2020))(info)GCA_009762595.2

•Dermochelys coriacea(leatherback sea turtle (v4 primary hap 2021 refseq))(info)GCF_009764565.3

•Dermochelys coriacea(leatherback sea turtle (v1 alternate hap 2019))(info)GCA_009762595.1

•Dermochelys coriacea(leatherback sea turtle (v1 2019 genbank G10K))(info)GCA_009764565.1

•Dermochelys coriacea(leatherback sea turtle (v3 2020 refseq G10K))(info)GCF_009764565.2

Chelydroidea

Kinosternidae

Sternotherus

•Sternotherus odoratus(eastern musk turtle (primary hap 2023))(info)GCA_032164245.1

Chelydridae

Macrochelys

Macrochelys suwanniensis

•Macrochelys suwanniensis(Suwannee snapping turtle (hap1 2023))(info)GCA_033296515.1

•Macrochelys suwanniensis(Suwannee snapping turtle (hap2 2023))(info)GCA_033349115.1

•Pelodiscus sinensis(Chinese soft-shelled turtle (Daiwa-1 2012))(info)GCF_000230535.1

•Pelodiscus sinensis(Chinese soft-shelled turtle (JC-2024 2025))(info)GCF_049634645.1

Carettochelyidae

Carettochelys

Carettochelys insculpta

•Carettochelys insculpta(pitted-shelled turtle (YL-2023 2023 genbank))(info)GCA_033958435.1

•Carettochelys insculpta(pitted-shelled turtle (YL-2023 2023 refseq))(info)GCF_033958435.1

•Myuchelys georgesi(Bellinger river turtle (v2 BRST_UC0152H_USYD 2025))(info)GCA_040894355.2

•Myuchelys georgesi(Bellinger river turtle (v1 BRST_UC0152H_USYD 2024))(info)GCA_040894355.1

Emydura

Emydura macquarii

•Emydura macquarii macquarii(Murray river turtle (Brisbane River MOO-44397 2024))(info)GCF_026122565.2

Podocnemididae

Podocnemis

Podocnemis expansa

•Podocnemis expansa(giant South American river turtle (hap1 2024))(info)GCA_045364785.1

•Podocnemis expansa(giant South American river turtle (hap2 2024))(info)GCA_045364815.1

•Vipera berus(adder (hap1 2024))(info)GCA_964194415.1

•Vipera berus(adder (hap2 2024))(info)GCA_964194405.1

Vipera latastei

•Vipera latastei(Lataste's viper (alternate hap 2022))(info)GCA_024294605.1

•Vipera latastei(Lataste's viper (primary hap 2022))(info)GCA_024294585.1

Vipera ursinii

•Vipera ursinii(meadow viper (alternate hap 2022))(info)GCA_947247025.1

•Vipera ursinii(meadow viper (primary hap 2022))(info)GCA_947247035.1

Crotalinae

Protobothrops

•Protobothrops mucrosquamatus(brown spotted pit viper)(info)GCF_001527695.2

Crotalus

Crotalus helleri

•Crotalus helleri(Southern Pacific rattlesnake (HBS135844 alternate hap 2022))(info)GCA_024509165.1

•Crotalus helleri(Southern Pacific rattlesnake (HBS135844 primary hap 2022))(info)GCA_024509115.1

•Crotalus tigris(tiger rattlesnake)(info)GCF_016545835.1

Colubridae

Ahaetuliinae

Ahaetulla

•Ahaetulla prasina(Asian vine snake (Xishuangbanna 2023))(info)GCF_028640845.1

Colubrinae

Arizona

Arizona elegans

•Arizona elegans(California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022))(info)GCA_022578425.1

•Arizona elegans(California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022))(info)GCA_022577455.1

Pantherophis

Pantherophis guttatus

•Pantherophis guttatus(corn snake (Columbia U 2023))(info)GCF_029531705.1

•Pantherophis guttatus(corn snake (EG266 2020))(info)GCF_001185365.1

Pituophis

Pituophis catenifer

Pituophis catenifer annectens

•Pituophis catenifer annectens(gopher snake (HBS135680 alternate hap 2023 refseq))(info)GCF_029215685.1

•Pituophis catenifer annectens(gopher snake (HBS135680 primary hap 2023))(info)GCA_029215655.1

•Pituophis catenifer annectens(gopher snake (HBS135680 alternate hap 2023))(info)GCA_029215685.1

Natricinae

Thamnophis

Thamnophis sirtalis

•Thamnophis sirtalis(common garter snake)(info)GCF_001077635.1

Thamnophis sirtalis fitchi

•Thamnophis sirtalis fitchi(valley gartersnake (HBS 135685 alternate hap 2023))(info)GCA_029207655.1

•Thamnophis sirtalis fitchi(valley gartersnake (HBS 135685 primary hap 2023))(info)GCA_029207665.1

Thamnophis elegans

•Thamnophis elegans(western terrestrial garter snake (alternate hap 2019))(info)GCA_009769695.1

•Thamnophis elegans(western terrestrial garter snake (primary hap 2019))(info)GCF_009769535.1

Natrix

Natrix helvetica

•Natrix helvetica(snake N.helvetica (rNatHel1.hap1.1 2024))(info)GCA_964273705.1

•Natrix helvetica(snake N.helvetica (rNatHel1.hap2.1 2024))(info)GCA_964273795.1

Lamprophiidae

Lamprophiinae

Boaedon

•Boaedon fuliginosus(brown house snake (FMNH 251328 2023))(info)GCA_027560395.1

Elapidae

Hydrophiinae

Pseudonaja

•Pseudonaja textilis(eastern brown snake)(info)GCF_900518735.1

Notechis

•Notechis scutatus(mainland tiger snake)(info)GCF_900518725.1

Hydrophis

•Hydrophis curtus(Shaw's sea snake (ss_UAE728 2024))(info)GCA_037043045.1

Elapinae

Naja

•Naja naja(Indian cobra (NN01 2019))(info)GCA_009733165.1

Bungarinae

Bungarus

•Bungarus multicinctus(many-banded krait (BM01 2022))(info)GCA_023653725.1

Dipsadidae

Diadophis

Diadophis punctatus

Diadophis punctatus similis

•Diadophis punctatus similis(Ringneck snake (HBS135679 primary hap 2022))(info)GCA_023053685.1

•Diadophis punctatus similis(San Diego ringneck snake (HBS135679 alternate hap 2022))(info)GCA_023053665.1

Erythrolamprus

Erythrolamprus reginae

•Erythrolamprus reginae(royal ground snake (hap1 2023 refseq))(info)GCF_031021105.1

•Erythrolamprus reginae(royal ground snake (hap2 2023))(info)GCA_031021085.1

•Erythrolamprus reginae(royal ground snake (hap3 2023))(info)GCA_031001685.1

•Erythrolamprus reginae(royal ground snake (hap1 2023 genbank))(info)GCA_031021105.1

Henophidia

Pythonidae

Python

•Python bivittatus(Burmese python)(info)GCF_000186305.1

Liasis

Liasis olivaceus

•Liasis olivaceus(olive python (hap1 2023))(info)GCA_030867105.1

•Liasis olivaceus(olive python (hap2 2023))(info)GCA_030867085.1

•Charina bottae(Northern rubber boa (HBS 135849 alternate hap 2022))(info)GCA_023362785.1

•Charina bottae(Northern rubber boa (HBS 135849 primary hap 2022))(info)GCA_023362775.1

Boinae

Candoia

Candoia aspera

•Candoia aspera(Papuan ground boa (hap1 2024))(info)GCA_035125265.1

•Candoia aspera(Papuan ground boa (hap2 2024 genbank))(info)GCA_035149785.1

•Candoia aspera(Papuan ground boa (hap2 2024 refseq))(info)GCF_035149785.1

Phrynosoma blainvillii

•Phrynosoma blainvillii(Blainville's horned lizard (alternate hap 2022))(info)GCA_026167975.1

•Phrynosoma blainvillii(Blainville's horned lizard (primary hap 2022))(info)GCA_026167985.1

Sceloporus

•Sceloporus undulatus(fence lizard)(info)GCF_019175285.1

Sceloporus occidentalis

•Sceloporus occidentalis(western fence lizard (IW3139 2022))(info)GCA_023333635.1

•Sceloporus occidentalis(western fence lizard (IW3139 primary hap 2022))(info)GCA_023333645.1

Dactyloidae

Anolis

Anolis sagrei

•Anolis sagrei(brown anole (maternal hap 2024 genbank))(info)GCA_037176765.1

•Anolis sagrei(Brown anole (maternal hap 2024 refseq))(info)GCF_037176765.1

•Anolis sagrei(Brown anole (rAnoSag1 2024))(info)GCA_037176775.1

Anolis sagrei ordinatus

•Anolis sagrei ordinatus(brown anole (Geneva1000 2022 refseq))(info)GCF_025583915.1

•Anolis sagrei ordinatus(brown anole (Geneva1000 2022 genbank))(info)GCA_025583915.1

Anolis carolinensis

•Anolis carolinensis(green anole (JA03-04 2024))(info)GCF_035594765.1

•Anolis carolinensis(green anole (v1 2011))(info)GCF_000090745.1

•Anolis carolinensis(green anole (v2 2010))(info)GCF_000090745.2

•Pogona vitticeps(central bearded dragon (2017))(info)GCF_900067755.1

•Pogona vitticeps(central bearded dragon (2025))(info)GCF_047335585.1

•Pogona vitticeps(central bearded dragon (Pit_001003342236 2025))(info)GCA_051106095.1

Chamaeleonidae

Bradypodion

Bradypodion pumilum

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province hap1 2025))(info)GCA_047715975.1

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province hap2 2025))(info)GCA_047715955.1

•Bradypodion pumilum(lizards B.pumilum (Western Cape Province JTBG20231 2024))(info)GCA_035047305.1

•Bradypodion ventrale(Southern dwarf chameleon (Gauteng JTBG20232 2024))(info)GCA_035047345.1

Furcifer

•Furcifer pardalis(lizards F.pardalis (Fpa_1 2023))(info)GCA_030440675.1

•Cyclura pinguis(Grand Cayman blue iguana (hap1 2023))(info)GCA_030412105.1

•Cyclura pinguis(Grand Cayman blue iguana (hap2 2023))(info)GCA_030412085.1

•Shinisaurus crocodilurus(Chinese crocodile lizard (Guangxi GXDGS128 2021))(info)GCA_021292165.1

Varanoidea

Varanidae

Varanus

•Varanus komodoensis(Komodo dragon (SLA01 2019))(info)GCF_004798865.1

•Anniella stebbinsi(San Diegan legless lizard (HBS135921 alternate hap 2023))(info)GCA_029215795.1

•Anniella stebbinsi(San Diegan legless lizard (HBS135921 primary hap 2023))(info)GCA_029215775.1

Anguidae

Elgaria

Elgaria multicarinata

Elgaria multicarinata webbii

•Elgaria multicarinata webbii(San Diego alligator lizard (HBS135686 alternate hap 2022))(info)GCA_023053675.1

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.0 HBS135686 primary hap 2022))(info)GCA_023053635.1

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 genbank))(info)GCA_023053635.2

•Elgaria multicarinata webbii(San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 refseq))(info)GCF_023053635.1

•Podarcis raffonei(Aeolian wall lizard (La Canna islet alternate hap 2022))(info)GCA_027172095.1

•Podarcis raffonei(Aeolian wall lizard (La Canna islet primary hap 2022 refseq))(info)GCF_027172205.1

•Podarcis raffonei(Aeolian wall lizard (La Canna islet primary hap 2022 genbank))(info)GCA_027172205.1

Podarcis liolepis

•Podarcis liolepis(Columbretes wall lizard (hap1.1 2025))(info)GCA_965112155.1

•Podarcis liolepis(Columbretes wall lizard (hap2.1 2025))(info)GCA_965178375.1

Podarcis muralis

•Podarcis muralis(common wall lizard (hap1 2024 genbank))(info)GCA_964188315.1

•Podarcis muralis(common wall lizard (hap1 2024 refseq))(info)GCF_964188315.1

•Podarcis muralis(common wall lizard (hap2 2024))(info)GCA_964188365.1

•Podarcis muralis(common wall lizard (yellow 2019))(info)GCF_004329235.1

Podarcis cretensis

•Podarcis cretensis(Cretan wall lizard (alternate hap 2023))(info)GCA_951804955.1

•Podarcis cretensis(Cretan wall lizard (primary hap 2023))(info)GCA_951804945.1

Podarcis filfolensis

•Podarcis filfolensis(Filfola wall lizard (rPodFil1.hap1.1 2024))(info)GCA_964270895.1

•Podarcis filfolensis(Filfola wall lizard (rPodFil1.hap2.1 2024))(info)GCA_964270875.1

Podarcis siculus

•Podarcis siculus(Italian wall lizard (rPodSic1.hap1.1 2024))(info)GCA_964188175.1

•Podarcis siculus(Italian wall lizard (rPodSic1.hap2.1 2024))(info)GCA_964188395.1

•Podarcis lilfordi(Lilford's wall lizard (2023))(info)GCA_947686815.1

Podarcis bocagei

•Podarcis bocagei(lizards P.bocagei (rPodBoc1.hap1.1 2024))(info)GCA_964188305.1

•Podarcis bocagei(lizards P.bocagei (rPodBoc1.hap2.1 2024))(info)GCA_964188325.1

Podarcis erhardii

•Podarcis erhardii(lizards P.erhardii (rPodErh1.hap1.1 2024))(info)GCA_964252035.1

•Podarcis erhardii(lizards P.erhardii (rPodErh1.hap2.1 2024))(info)GCA_964251985.1

Podarcis melisellensis

•Podarcis melisellensis(lizards P.melisellensis (rPodMel1.hap1.1 2024))(info)GCA_964234715.1

•Podarcis melisellensis(lizards P.melisellensis (rPodMel1.hap2.1 2024))(info)GCA_964234825.1

Podarcis pityusensis

•Podarcis pityusensis(lizards P.pityusensis (rPodPit1.hap1.2 2024))(info)GCA_964106645.2

•Podarcis pityusensis(lizards P.pityusensis (rPodPit1.hap2.2 2024))(info)GCA_964106635.2

Podarcis vaucheri

•Podarcis vaucheri(lizards P.vaucheri (hap1.1 2025))(info)GCA_965113315.1

•Podarcis vaucheri(lizards P.vaucheri (hap2.1 2025))(info)GCA_965113305.1

Podarcis gaigeae

•Podarcis gaigeae(Skyros wall lizard (rPodGai1.hap2.1 2024))(info)GCA_964106785.1

•Podarcis gaigeae(Skyros wall lizard (v1 hap1 2024))(info)GCA_964106915.1

•Podarcis gaigeae(Skyros wall lizard (v2 hap1 2024))(info)GCA_964106915.2

Podarcis tiliguerta

•Podarcis tiliguerta(Tyrrhenian wall lizard (hap1 2025))(info)GCA_965153285.1

•Podarcis tiliguerta(Tyrrhenian wall lizard (hap2 2025))(info)GCA_965153305.1

Zootoca

Zootoca vivipara

•Zootoca vivipara(common lizard Z.vivipara (hap1.1 2025))(info)GCA_965207765.1

•Zootoca vivipara(common lizard Z.vivipara (hap2.1 2025))(info)GCA_965208345.1

•Zootoca vivipara(common lizard Z.vivipara (primary hap 2023))(info)GCF_963506605.1

•Zootoca vivipara(viviparous/common lizard)(info)GCF_011800845.1

Lacerta

Lacerta agilis

•Lacerta agilis(sand lizard (alternate hap 2019))(info)GCA_009819545.1

•Lacerta agilis(sand lizard (primary hap 2019))(info)GCF_009819535.1

•Rhineura floridana(Florida worm lizard (hap1 rRhiFlo1 2023))(info)GCA_030035715.1

•Rhineura floridana(Florida worm lizard (hap2 2023 genbank))(info)GCA_030035675.1

•Rhineura floridana(Florida worm lizard (hap2 2023 refseq))(info)GCF_030035675.1

Teiioidea

Teiidae

Aspidoscelis

Aspidoscelis tigris group

•Aspidoscelis marmoratus(marbled whiptail (SIMRID8450 2020))(info)GCA_014337955.1

Aspidoscelis tigris

Aspidoscelis tigris stejnegeri

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (alternate hap HBS 135688 2022))(info)GCA_023333555.1

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (v1.1 HBS 135688 primary hap 2025))(info)GCA_023333525.2

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (HBS 135688 primary hap 2022))(info)GCA_023333525.1

•Tiliqua scincoides(common blue-tongued skink (hap1 2024))(info)GCA_035046495.1

•Tiliqua scincoides(common blue-tongued skink (hap2 2024))(info)GCA_035046505.1

•Tiliqua scincoides(lizards T.scincoides (rTilSci1hap2 2024))(info)GCF_035046505.1

Scincinae

Plestiodon

Plestiodon gilberti

Plestiodon gilberti rubricaudatus

•Plestiodon gilberti rubricaudatus(western red-tailed skink (HBS 135693 alternate hap 2022))(info)GCA_026170595.1

•Plestiodon gilberti rubricaudatus(western red-tailed skink (HBS 135693 primary hap 2022))(info)GCA_026170395.1

•Hemicordylus capensis(graceful crag lizard (Gifberg primary hap 2022))(info)GCF_027244095.1

•Correlophus ciliatus(crested gecko (US Hobby MAA-2024a 2024))(info)GCA_040207535.1

Sphaerodactylidae

Euleptes

Euleptes europaea

•Euleptes europaea(European leaf-toed gecko (hap1 2023))(info)GCF_029931775.1

•Euleptes europaea(European leaf-toed gecko (hap2 2023))(info)GCA_029931755.1

Sphaerodactylus

•Sphaerodactylus townsendi(Townsend's dwarf sphaero (gecko TG3544 2022))(info)GCF_021028975.2

Eublepharidae

Eublepharinae

Eublepharis

Eublepharis macularius

•Eublepharis macularius(Leopard gecko (TG4126 2023))(info)GCA_028583425.1

•Eublepharis macularius(leopard gecko (TG4126 2023))(info)GCF_028583425.1

Gekkonidae

Gekkoninae

Paroedura

•Paroedura picta(Madagascar ground gecko (Pp20150507F 2025))(info)GCF_049243985.1

Heteronotia

•Heteronotia binoei(prickly gecko (False Entrance Well CCM8104 2023))(info)GCF_032191835.1

Gekko

•Gekko japonicus(Schlegel's Japanese gecko)(info)GCF_001447785.1

Dibamidae

Dibamus

Dibamus cf. smithi

•Dibamus cf. smithi(lizards D.cf. smithi (hap1 2024))(info)GCA_046126795.1

•Dibamus cf. smithi(lizards D.cf. smithi (hap2 2024))(info)GCA_046126825.1

•Orycteropus afer(aardvark (BS58 2019 Broad))(info)GCA_004365145.1

•Orycteropus afer afer(aardvark (SDZICR_OR568_19922 2012 Broad))(info)GCF_000298275.1

•Loxodonta africana(African savanna elephant (2009 refseq))(info)GCF_000001905.1

•Loxodonta africana(African savanna elephant (hap1 mLoxAfr1 2023))(info)GCA_030020305.1

•Loxodonta africana(African savanna elephant (hap2 2023 genbank))(info)GCA_030014295.1

•Loxodonta africana(African savanna elephant (hap2 2023 refseq))(info)GCF_030014295.1

•Loxodonta africana(African savanna elephant (2009 genbank))(info)GCA_000001905.1

Elephas

Elephas maximus

Elephas maximus indicus

•Elephas maximus indicus(Asiatic elephant (mEleMax1 alternate hap 2022))(info)GCA_024166345.1

•Elephas maximus indicus(Asiatic elephant (mEleMax1 primary hap 2022))(info)GCF_024166365.1

•Trichechus inunguis(Amazon manatee (hap1 2025))(info)GCA_046562985.1

•Trichechus inunguis(Amazon manatee (hap2 2025))(info)GCA_046562895.1

Trichechus manatus

Trichechus manatus latirostris

•Trichechus manatus latirostris(Florida manatee (CSIC 2023))(info)GCA_030013775.1

•Trichechus manatus latirostris(Florida manatee (Lorelei 2012 refseq))(info)GCF_000243295.1

•Trichechus manatus latirostris(Florida manatee (Lorelei 2012 genbank))(info)GCA_000243295.1

Dugongidae

Dugong

Dugong dugon

•Dugong dugon(dugong (hap1 mDugDug1 2023))(info)GCA_030035585.1

•Dugong dugon(dugong (hap2 mDugDug1 2023))(info)GCA_030020955.1

•Rhynchocyon petersi(black and rufous elephant shrew (mRhyPet1hap1 2024))(info)GCA_043290085.1

•Rhynchocyon petersi(black and rufous elephant shrew (mRhyPet1hap2 2024))(info)GCA_043290065.1

Elephantulus

•Elephantulus edwardii(Cape elephant shrew)(info)GCF_000299155.1

Chrysochloris asiatica

•Chrysochloris asiatica(Cape golden mole (2012 Broad))(info)GCF_000296735.1

•Chrysochloris asiatica(Cape golden mole (BS56 2019 Broad))(info)GCA_004027935.1

•Echinops telfairi(small Madagascar hedgehog)(info)GCF_000313985.2

•Echinops telfairi(small Madagascar hedgehog)(info)GCA_000313985.1

Tenrec

•Tenrec ecaudatus(tailess tenrec (hap1 2025))(info)GCF_050624435.1

Oryzorictinae

Nesogale

•Nesogale talazaci(Talazac's shrew tenrec)(info)GCA_004026705.1

•Procavia capensis(Cape rock hyrax (Dallas Zoo Isis #01D731 2014))(info)GCA_000152225.2

•Procavia capensis(Cape rock hyrax (US060 2019 Broad))(info)GCA_004026925.1

Heterohyrax

Heterohyrax brucei

•Heterohyrax brucei(yellow-spotted hyrax)(info)GCA_004026845.1

•Heterohyrax brucei(yellow-spotted hyrax (mHetBru1 2023))(info)GCA_028571685.1

•Heterohyrax brucei(yellow-spotted hyrax (mHetBru1 alternate hap 2023))(info)GCA_028571665.1

Arvicanthis niloticus

•Arvicanthis niloticus(African grass rat (maternal 2020))(info)GCA_011750645.1

•Arvicanthis niloticus(African grass rat (paternal 2020))(info)GCA_011762545.1

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 refseq))(info)GCF_011762505.1

•Arvicanthis niloticus(African grass rat (v2 paternal X 2024 genbank))(info)GCA_011762505.2

•Arvicanthis niloticus(African grass rat (v2 paternal X 2025 refseq))(info)GCF_011762505.2

•Arvicanthis niloticus(African grass rat (v3 paternal hap 2024))(info)GCA_011762505.3

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 genbank))(info)GCA_011762505.1

Mastomys

Mastomys natalensis

•Mastomys natalensis(African soft-furred rat (Lowveld savanna grassland N552 2022))(info)GCA_021653895.1

•Mastomys natalensis(African soft-furred rat (MVZ Mamm 221054 2021))(info)GCA_019843795.1

•Mastomys coucha(southern multimammate mouse)(info)GCF_008632895.1

Hylomyscus

•Hylomyscus alleni(Allen's wood mouse (MVZ Mamm 196246 2021))(info)GCA_019843855.1

Rattus

•Rattus rattus(black rat)(info)GCF_011064425.1

Rattus norvegicus

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 genbank))(info)GCA_036323735.1

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 refseq))(info)GCF_036323735.1

•Rattus norvegicus(Norway rat (F344/Stm 2024))(info)GCA_041222355.1

•Rattus norvegicus(Norway rat BN7 haplotype)(info)GCA_015244455.1

•Rattus norvegicus(Norway rat BN7.2)(info)GCF_015227675.2

•Rattus norvegicus(Norway rat celera)(info)GCF_000002265.2

•Rattus norvegicus(Norway rat Rnor6.0)(info)GCF_000001895.5

•Rattus norvegicus(Norway rat SHR/Utx RGD_8142385 2022)(info)GCA_023515785.1

•Rattus norvegicus(Norway rat SHRSP/BppUtx 2022)(info)GCA_021556685.1

•Rattus norvegicus(Norway rat WKY/Bbb 2022)(info)GCA_023515805.1

•Rattus norvegicus(Norway rat BN7 genbank)(info)GCA_015227675.2

Grammomys

•Grammomys dolichurus(common thicket rat (MVZ Mamm 221001 2021))(info)GCA_019843835.1

•Grammomys surdaster(woodland thicket rat)(info)GCF_004785775.1

Mus

Mus musculus

•Mus musculus(house mouse (129S1_SvImJv1 2016))(info)GCA_001624185.1

•Mus musculus(house mouse (129S1_SvImJ_v3 2022))(info)GCA_921998555.2

•Mus musculus(house mouse (AKR_J v3 2022))(info)GCA_922000895.2

•Mus musculus(house mouse (alternate hap 2023))(info)GCA_949316305.1

•Mus musculus(house mouse (A_J v3 2022))(info)GCA_921998355.2

•Mus musculus(house mouse (BALB_cJ v3 2022))(info)GCA_921997145.2

•Mus musculus(house mouse (C3H_HeJ v3 2022))(info)GCA_921997125.2

•Mus musculus(house mouse (C57BL/6J 2012))(info)GCA_000185105.2

•Mus musculus(house mouse (C57BL_6J T2T 2024))(info)GCA_964188535.1

•Mus musculus(house mouse (CBA_J v3 2022))(info)GCA_921998905.2

•Mus musculus(house mouse (DBA_2J v3 2022))(info)GCA_921998315.2

•Mus musculus(house mouse (FVB_NJ v3 2022))(info)GCA_921998635.2

•Mus musculus(house mouse (LP_J v3 2022))(info)GCA_947599735.1

•Mus musculus(house mouse (NOD_ShiLtJ v3 2022))(info)GCA_921998325.2

•Mus musculus(house mouse (NZO_HlLtJ v3 2022))(info)GCA_947593165.1

•Mus musculus(house mouse (primary hap 2023))(info)GCA_949316315.1

•Mus musculus(house mouse C57BL/6J 2020 GRC)(info)GCF_000001635.27

•Mus musculus(house mouse C57BL_6NJ (2016))(info)GCA_001632555.1

•Mus musculus(house mouse C57BL_6NJ (2022))(info)GCA_921999865.2

•Mus musculus(house mouse (AKR_J v1 2016))(info)GCA_001624295.1

•Mus musculus(house mouse (A_J v1 2016))(info)GCA_001624215.1

•Mus musculus(house mouse (BALB_cJ v1 2016))(info)GCA_001632525.1

•Mus musculus(house mouse (C3H_HeJ v1 2016))(info)GCA_001632575.1

•Mus musculus(house mouse (CBA_J v1 2016))(info)GCA_001624475.1

•Mus musculus(house mouse (DBA_2J v1 2016))(info)GCA_001624505.1

•Mus musculus(house mouse (FVB_NJ v1 2016))(info)GCA_001624535.1

•Mus musculus(house mouse (GRCm38.p6 2017))(info)GCF_000001635.26

•Mus musculus(house mouse (LP_J v1 2016))(info)GCA_001632615.1

•Mus musculus(house mouse (NOD_ShiLtJ v1 2016))(info)GCA_001624675.1

•Mus musculus(house mouse (NZO_HlLtJ v1 2016))(info)GCA_001624745.1

Mus musculus musculus

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v2 2022))(info)GCA_921998335.2

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v1 2016))(info)GCA_001624775.1

•Mus musculus molossinus(Japanese wild mouse (2022))(info)GCA_921999095.2

Mus musculus castaneus

•Mus musculus castaneus(Southeastern Asian house mouse (2016))(info)GCA_001624445.1

•Mus musculus castaneus(Southeastern Asian house mouse (2022))(info)GCA_921999005.2

•Mus musculus castaneus(Southeastern Asian house mouse (T2T 2024))(info)GCA_964188545.1

Mus musculus domesticus

•Mus musculus domesticus(western European house mouse (WSB_EiJ v3 2022))(info)GCA_921998345.2

•Mus musculus domesticus(western European house mouse (WSB_EiJ v1 2016))(info)GCA_001624835.1

Mus caroli

•Mus caroli(Ryukyu mouse (v2 2017))(info)GCF_900094665.2

•Mus caroli(Ryukyu mouse (v1 2017 EBI genbank))(info)GCA_900094665.2

•Mus caroli(Ryukyu mouse (v1 2017 EBI refseq))(info)GCF_900094665.1

•Mus spicilegus(steppe mouse (ZRU 2018))(info)GCA_003336285.1

Mus spretus

•Mus spretus(western wild mouse (SPRET_EiJ v3 2022))(info)GCA_921997135.2

•Mus spretus(western wild mouse (SPRET_EiJ v1 2016))(info)GCA_001624865.1

Coelomys

•Mus pahari(shrew mouse)(info)GCF_900095145.1

Apodemus

•Apodemus agrarius(Eurasian field mouse (2024))(info)GCA_964023405.1

Sylvaemus group

Apodemus sylvaticus

•Apodemus sylvaticus(European woodmouse (2022 refseq))(info)GCF_947179515.1

•Apodemus sylvaticus(European woodmouse (alternate hap 2022))(info)GCA_947179525.1

•Apodemus sylvaticus(European woodmouse (2022 genbank))(info)GCA_947179515.1

•Apodemus speciosus(large Japanese field mouse (IB14-021 2017))(info)GCA_002335545.1

Micromys

•Micromys minutus(European harvest mouse (primary hap 2024))(info)GCA_963924665.1

Rhabdomys

•Rhabdomys dilectus(mesic four-striped grass rat (FMNH 192475 2021))(info)GCA_019844195.1

Rhynchomys

•Rhynchomys soricoides(Mount Data shrew rat (FMNH 198792 2021))(info)GCA_019843965.1

Tokudaia

Tokudaia muenninki

•Tokudaia muenninki(Okinawa island spiny rat (P-3 2024))(info)GCA_047150545.1

•Tokudaia muenninki(Okinawa island spiny rat (P-3 primary hap 2023))(info)GCA_036184385.1

Lophiomyinae

Lophiomys

•Lophiomys imhausi(crested rat (2021))(info)GCA_907164525.1

Deomyinae

Acomys

•Acomys minous(Crete spiny mouse (2024))(info)GCA_964271855.1

•Acomys dimidiatus(eastern spiny mouse (2021))(info)GCA_907164435.1

•Acomys cahirinus(Egyptian spiny mouse (US019 2019))(info)GCA_004027535.1

•Acomys russatus(golden spiny mouse (2020))(info)GCF_903995435.1

Gerbillinae

Psammomys

Psammomys obesus

•Psammomys obesus(fat sand rat (mPsaObe1 2021))(info)GCF_907164565.1

•Psammomys obesus(fat sand rat (Psa_ob012049795 2017))(info)GCA_002215935.1

Meriones

Meriones unguiculatus

•Meriones unguiculatus(Mongolian gerbil (243 2017 Lucigen Corp.))(info)GCF_002204375.1

•Meriones unguiculatus(Mongolian gerbil (EAM2014 2019 BGI))(info)GCA_008131255.1

•Meriones unguiculatus(Mongolian gerbil (TT.TT164.6M 2023))(info)GCF_030254825.1

•Meriones unguiculatus(Mongolian gerbil (US013 2019 Broad))(info)GCA_004026785.1

Cricetidae

Arvicolinae

Myodes

•Myodes glareolus(bank vole)(info)GCF_902806735.1

Microtus

Microtus californicus

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 alternate hap 2023))(info)GCA_028537755.1

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 primary hap 2023))(info)GCA_028537955.1

•Microtus oregoni(creeping vole)(info)GCF_018167655.1

Microtus pennsylvanicus

•Microtus pennsylvanicus(meadow vole (hap1 2024 genbank))(info)GCA_037038515.1

•Microtus pennsylvanicus(meadow vole (hap1 2024 refseq))(info)GCF_037038515.1

•Microtus pennsylvanicus(meadow vole (hap2 2024))(info)GCA_037039175.1

•Microtus ochrogaster(prairie vole)(info)GCF_000317375.1

•Microtus richardsoni(water vole (JQ59JK4JDI 2023))(info)GCA_019206885.2

Arvicola

Arvicola amphibius

•Arvicola amphibius(Eurasian water vole (alternate hap 2020))(info)GCA_903992525.1

•Arvicola amphibius(Eurasian water vole (v2 2021))(info)GCF_903992535.2

•Arvicola amphibius(Eurasian water vole (v1 2020))(info)GCF_903992535.1

Chionomys

Chionomys nivalis

•Chionomys nivalis(European snow vole (alternate hap 2023))(info)GCA_950005115.1

•Chionomys nivalis(European snow vole (primary hap 2023 refseq))(info)GCF_950005125.1

•Chionomys nivalis(European snow vole (primary hap 2023 genbank))(info)GCA_950005125.1

Ondatra

•Ondatra zibethicus(muskrat)(info)GCA_004026605.1

Ellobius

•Ellobius talpinus(northern mole vole)(info)GCA_001685095.1

Alexandromys

•Alexandromys fortis(reed vole (MF-2015 2020))(info)GCF_014885135.2

•Alexandromys oeconomus(root vole (2023))(info)GCA_963919705.1

Neotominae

Peromyscus

•Peromyscus eremicus(cactus mouse (2023))(info)GCF_949786415.1

Peromyscus californicus

•Peromyscus californicus insignis(California mouse (IS 2022))(info)GCF_007827085.1

Peromyscus maniculatus

Peromyscus maniculatus sonoriensis

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 alternate hap 2022))(info)GCA_026167925.1

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 primary hap 2022))(info)GCA_026229955.1

Peromyscus maniculatus bairdii

•Peromyscus maniculatus bairdii(prairie deer mouse (Baylor 2013))(info)GCF_000500345.1

•Peromyscus maniculatus bairdii(prairie deer mouse (BWxNUB_F1_BW_parent 2025))(info)GCF_049852395.1

•Peromyscus maniculatus bairdii(prairie deer mouse (Harvard 2020))(info)GCF_003704035.1

Peromyscus leucopus

•Peromyscus leucopus(white-footed mouse (LL stock 2020))(info)GCF_004664715.2

•Peromyscus leucopus(white-footed mouse)(info)GCF_004664715.1

Onychomys

Onychomys torridus

•Onychomys torridus(southern grasshopper mouse (2020))(info)GCF_903995425.1

•Onychomys torridus(southern grasshopper mouse (US017 2019 Broad))(info)GCA_004026725.1

Cricetinae

Cricetulus

Cricetulus griseus

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2020))(info)GCF_003668045.3

•Cricetulus griseus(Chinese hamster (CHO v1 2011 BGI))(info)GCF_000223135.1

•Cricetulus griseus(Chinese hamster (CHO v2 2017 Eagle Genomics Ltd))(info)GCA_900186095.1

•Cricetulus griseus(Chinese hamster (CHO-K1 CHOZN v2.4 2022))(info)GCA_026545065.1

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2018))(info)GCF_003668045.1

Phodopus

•Phodopus roborovskii(desert hamster (2022))(info)GCF_943737965.1

Phodopus sungorus

•Phodopus sungorus(Siberian hamster (SSSS 2022))(info)GCA_023856395.1

•Phodopus sungorus(winter white dwarf (Siberian hamster Psun_Stras_1 2023))(info)GCA_030556225.1

Mesocricetus

Mesocricetus auratus

•Mesocricetus auratus(golden hamster (Baylor 2021))(info)GCF_017639785.1

•Mesocricetus auratus(golden hamster (Broad 2013 refseq))(info)GCF_000349665.1

•Mesocricetus auratus(golden hamster (Baylor 2013 genbank))(info)GCA_000349665.1

Sigmodontinae

Sigmodon

•Sigmodon hispidus(hispid cotton rat)(info)GCA_004025045.1

Phyllotis

•Phyllotis vaccarum(Punta de Vaca leaf-eared mouse (GD2095 2023))(info)GCA_033318265.1

Bramus

•Bramus lutescens(Transcaucasian mole vole)(info)GCA_001685075.1

Nesomyidae

Cricetomyinae

Cricetomys

•Cricetomys gambianus(Gambian giant pouched rat)(info)GCA_004027575.1

Platacanthomyidae

Typhlomys

•Typhlomys cinereus(Soft-furred tree mouse (WYS1704033 2022))(info)GCA_023101885.1

•Nannospalax galili(Upper Galilee mountains blind mole rat (2095 2014 refseq))(info)GCF_000622305.1

•Nannospalax galili(Upper Galilee mountains blind mole rat (#2095 2014 genbank))(info)GCA_000622305.1

•Orientallactaga bullata(Gobi jerboa)(info)GCA_004027895.1

Dipodinae

Jaculus

Jaculus jaculus

•Jaculus jaculus(lesser Egyptian jerboa (2021))(info)GCF_020740685.1

•Jaculus jaculus(lesser Egyptian jerboa (alternate hap 2021))(info)GCA_020740715.1

•Jaculus jaculus(lesser Egyptian jerboa (JJ0015 2012 refseq))(info)GCF_000280705.1

•Jaculus jaculus(lesser Egyptian jerboa (JJ0015 2012 genbank))(info)GCA_000280705.1

Dipus

•Dipus sagitta(northern three-toed jerboa (halli NM19106 2024))(info)GCA_036346955.1

Zapodinae

Zapus

•Zapus hudsonius(meadow jumping mouse)(info)GCA_004024765.1

Marmota marmota marmota

•Marmota marmota marmota(Alpine marmot (2019))(info)GCF_001458135.2

•Marmota marmota marmota(Alpine marmot (2015))(info)GCF_001458135.1

•Marmota vancouverensis(Vancouver Island marmot (RANI-1049 2019))(info)GCA_005458795.1

Marmota monax

•Marmota monax(woodchuck (v1.1 L192 2022))(info)GCF_021218885.2

•Marmota monax(woodchuck (CNAG 2019))(info)GCA_901343595.1

•Marmota monax(woodchuck (v1.0 LI92 2021))(info)GCF_021218885.1

Marmota flaviventris

•Marmota flaviventris(yellow-bellied marmot (hap1 2025 refseq))(info)GCF_047511675.1

•Marmota flaviventris(yellow-bellied marmot (hap2 2025))(info)GCA_047512175.1

•Marmota flaviventris(yellow-bellied marmot (SJ_83 v2.1 2019))(info)GCF_003676075.3

•Marmota flaviventris(yellow-bellied marmot (hap1 2025 genbank))(info)GCA_047511675.1

•Marmota flaviventris(yellow-bellied marmot (SJ_83 v2.0 2019))(info)GCF_003676075.2

•Marmota flaviventris(yellow-bellied marmot (v1 2018))(info)GCF_003676075.1

Urocitellus

Urocitellus parryii

•Urocitellus parryii(Arctic ground squirrel (AGS 11-09-20 2018))(info)GCF_003426925.1

•Urocitellus parryii(Arctic ground squirrel (hap1 2024))(info)GCA_045843805.1

•Urocitellus parryii(Arctic ground squirrel (hap2 2024))(info)GCA_045843765.1

•Urocitellus parryii(Arctic ground squirrel (mUroPar1hap1 2024))(info)GCF_045843805.1

Spermophilus

•Spermophilus dauricus(Daurian ground squirrel)(info)GCA_002406435.1

•Spermophilus citellus(European suslik (primary hap 2024))(info)GCA_964194105.1

Callospermophilus

Callospermophilus lateralis

•Callospermophilus lateralis(golden-mantled ground squirrel (hap1 2025 genbank))(info)GCA_048772815.1

•Callospermophilus lateralis(golden-mantled ground squirrel (hap1 2025 refseq))(info)GCF_048772815.1

•Callospermophilus lateralis(golden-mantled ground squirrel (hap2 2025 genbank))(info)GCA_048772825.1

•Callospermophilus lateralis(golden-mantled ground squirrel (hap2 2025 refseq))(info)GCF_048772825.1

Ictidomys

Ictidomys tridecemlineatus

•Ictidomys tridecemlineatus(thirteen-lined ground squirrel (2021 HiC))(info)GCF_016881025.1

•Ictidomys tridecemlineatus(thirteen-lined ground squirrel (mIctTri1hap1 2025))(info)GCF_052094955.1

•Ictidomys tridecemlineatus(thirteen-lined ground squirrel (2011))(info)GCF_000236235.1

Xerini

Xerus

•Xerus inauris(South African ground squirrel)(info)GCA_004024805.1

•Sciurus vulgaris(Eurasian red squirrel (alternate hap 2019))(info)GCA_902685485.1

•Sciurus vulgaris(Eurasian red squirrel (v1.2 2020))(info)GCA_902686455.2

•Sciurus vulgaris(Eurasian red squirrel (v1.1 2019))(info)GCA_902686455.1

Sciurus carolinensis

•Sciurus carolinensis(gray squirrel (2020))(info)GCF_902686445.1

•Sciurus carolinensis(gray squirrel (alternate hap 2019))(info)GCA_902685475.1

Gliridae

Glirinae

Glis

•Glis glis(fat dormouse (US078 2019))(info)GCA_004027185.1

Muscardinus

Muscardinus avellanarius

•Muscardinus avellanarius(hazel dormouse)(info)GCA_004027005.1

•Muscardinus avellanarius(hazel dormouse (alternate hap 2023))(info)GCA_963383665.1

•Muscardinus avellanarius(hazel dormouse (primary hap 2023))(info)GCA_963383645.1

Graphiurinae

Graphiurus

•Graphiurus murinus(woodland dormouse)(info)GCA_004027655.1

Aplodontiidae

Aplodontia

•Aplodontia rufa(mountain beaver)(info)GCA_004027875.1

•Castor canadensis(American beaver (hap1 2025))(info)GCA_047511655.1

•Castor canadensis(American beaver (hap2 2025))(info)GCA_047511605.1

•Castor canadensis(American beaver (mCasCan1.hap1v2 2025))(info)GCF_047511655.1

•Castor canadensis(American beaver (Ward 2017 refseq))(info)GCF_001984765.1

•Castor canadensis(American beaver (US014 2019 Broad))(info)GCA_004027675.1

Heteromyidae

Dipodomyinae

Dipodomys

•Dipodomys spectabilis(banner-tailed kangaroo rat)(info)GCF_019054845.1

Dipodomys merriami

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 alternate hap 2022))(info)GCA_024711525.1

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022))(info)GCA_024711535.1

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022))(info)GCF_024711535.1

•Dipodomys ordii(Ord's kangaroo rat)(info)GCF_000151885.1

•Dipodomys stephensi(Stephens's kangaroo rat)(info)GCA_004024685.1

Perognathinae

Perognathus

Perognathus longimembris

•Perognathus longimembris(little pocket mouse (longimembris alternate hap 2022))(info)GCA_024363435.1

•Perognathus longimembris(little pocket mouse (longimembris primary hap 2022))(info)GCA_024363575.1

Perognathus longimembris pacificus

•Perognathus longimembris pacificus(Pacific pocket mouse (BS65 2019 Broad))(info)GCA_004363475.1

•Perognathus longimembris pacificus(Pacific pocket mouse (PPM17 2022 San Diego Zoo))(info)GCF_023159225.1

Geomyidae

Thomomys

Thomomys bottae

•Thomomys bottae(Botta's pocket gopher (bottae MVZ:Mamm:240275 alternate hap 2022))(info)GCA_024803775.1

•Thomomys bottae(Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022))(info)GCA_024803745.1

•Thomomys bottae(Botta's pocket gopher (hap1 2023))(info)GCA_031878675.1

•Thomomys bottae(Botta's pocket gopher (hap2 2023))(info)GCA_031878665.1

Hystricomorpha

Hystricidae

Hystrix

•Hystrix brachyura(Asiatic brush-tailed porcupine (POm2014 2021))(info)GCA_016801275.1

•Hystrix cristata(crested porcupine)(info)GCA_004026905.1

Caviidae

Cavia

•Cavia aperea(Brazilian guinea pig)(info)GCA_000688575.1

Cavia porcellus

•Cavia porcellus(domestic guinea pig (051 PalLab524CR 2023))(info)GCF_034190915.1

•Cavia porcellus(domestic guinea pig (2N 2008 refseq))(info)GCF_000151735.1

•Cavia porcellus(domestic guinea pig (2N 2008 genbank))(info)GCA_000151735.1

•Cavia tschudii(Montane guinea pig)(info)GCA_004027695.1

Dolichotis

•Dolichotis patagonum(Patagonian cavy)(info)GCA_004027295.1

Hydrochaeridae

Hydrochoerus

•Hydrochoerus hydrochaeris(capybara)(info)GCA_004027455.1

Bathyergidae

Fukomys

Fukomys damarensis

•Fukomys damarensis(Damara mole-rat DMR 1.0 (2014 BGI))(info)GCF_000743615.1

•Fukomys damarensis(Damara mole-rat DMR 1.0 HiC (2020 DNA Zoo))(info)GCF_012274545.1

Heterocephalus

Heterocephalus glaber

•Heterocephalus glaber(naked mole-rat (2022))(info)GCA_944319725.1

•Heterocephalus glaber(naked mole-rat (mHap 2024))(info)GCA_964261345.1

•Heterocephalus glaber(naked mole-rat (pHap 2024))(info)GCA_964261355.1

•Heterocephalus glaber(naked mole-rat (MEF-2018 2020))(info)GCA_014060925.1

•Heterocephalus glaber(naked mole-rat (NMR 29 2012 refseq))(info)GCF_000247695.1

•Heterocephalus glaber(naked mole-rat (NMR 29 2012 genbank))(info)GCA_000247695.1

Petromuridae

Petromus

•Petromus typicus(dassie-rat)(info)GCA_004026965.1

Octodontidae

Octodon

Octodon degus

•Octodon degus(degu (3935 2012 refseq))(info)GCF_000260255.1

•Octodon degus(degu (3935 2012 genbank))(info)GCA_000260255.1

Tympanoctomys

•Tympanoctomys barrerae(plains viscacha rat (AO245 2017))(info)GCA_002564285.1

Capromyidae

Capromys

•Capromys pilorides(Desmarest's hutia)(info)GCA_004027915.1

Thryonomyidae

Thryonomys

•Thryonomys swinderianus(Greater cane rat)(info)GCA_004025085.1

Chinchillidae

Chinchilla

•Chinchilla lanigera(long-tailed chinchilla)(info)GCF_000276665.1

Cuniculidae

Cuniculus

•Cuniculus paca(Lowland paca)(info)GCA_004365215.1

Erethizontidae

Erethizon

Erethizon dorsatum

•Erethizon dorsatum(North American porcupine (mEreDor1 alternate hap 2023))(info)GCA_028500835.1

•Erethizon dorsatum(North American porcupine (mEreDor1 primary hap 2023))(info)GCA_028451465.1

Ctenodactylidae

Ctenodactylus

Ctenodactylus gundi

•Ctenodactylus gundi(northern gundi (hap1 2025))(info)GCA_048771875.1

•Ctenodactylus gundi(northern gundi (hap2 2025))(info)GCA_048771865.1

•Ctenodactylus gundi(northern gundi (US049 2019))(info)GCA_004027205.1

Myocastoridae

Myocastor

•Myocastor coypus(nutria)(info)GCA_004027025.1

Dinomyidae

Dinomys

•Dinomys branickii(pacarana)(info)GCA_004027595.1

Dasyproctidae

Dasyprocta

•Dasyprocta punctata(punctate agouti)(info)GCA_004363535.1

Ctenomyidae

Ctenomys

•Ctenomys sociabilis(social tuco-tuco)(info)GCA_004027165.1

•Ochotona princeps(American pika (hap1 2023))(info)GCF_030435755.1

•Ochotona princeps(American pika (hap2 2023))(info)GCA_030435715.1

•Ochotona princeps(American pika 3.0 (2012 Broad refseq))(info)GCF_000292845.1

•Ochotona princeps(American pika 4.0 (UAM:Mamm:113957 2020))(info)GCF_014633375.1

•Ochotona princeps(American pika 3.0 (2012 Broad genbank))(info)GCA_000292845.1

•Ochotona curzoniae(black-lipped pika)(info)GCF_017591425.1

Leporidae

Sylvilagus

•Sylvilagus floridanus(eastern cottontail (primary hap 2023))(info)GCA_949820135.1

Lepus

•Lepus europaeus(European hare (LE1 primary hap 2023))(info)GCF_033115175.1

•Lepus americanus(snowshoe hare)(info)GCA_004026855.1

•Lepus oiostolus(woolly hare (The Qinghai-Tibet Plateau SH-2023 2024))(info)GCA_036325905.1

Oryctolagus

Oryctolagus cuniculus

•Oryctolagus cuniculus(rabbit (New Zealand White DNA-2018 2021 refseq))(info)GCF_009806435.1

•Oryctolagus cuniculus(rabbit (primary hap 2024 refseq))(info)GCF_964237555.1

•Oryctolagus cuniculus(rabbit (Thorbecke 2009 Broad refseq))(info)GCF_000003625.3

•Oryctolagus cuniculus(rabbit (primary hap 2024 genbank))(info)GCA_964237555.1

•Oryctolagus cuniculus(rabbit (New Zealand White DNA-2018 2021 genbank))(info)GCA_009806435.2

•Oryctolagus cuniculus(rabbit (Thorbecke 2009 Broad genbank))(info)GCA_000003625.1

•Oryctolagus cuniculus cuniculus(rabbit (A946 2020))(info)GCA_013371645.1

•Tupaia chinensis(Chinese tree shrew (2013 BGI))(info)GCF_000334495.1

•Tupaia chinensis(Chinese tree shrew (KIZ-2021 2023))(info)GCA_033439345.1

Tupaia tana

•Tupaia tana(large tree shrew (BS70 2022))(info)GCA_026018925.1

•Tupaia tana(large tree shrew (BS70 2019 Broad))(info)GCA_004365275.1

•Cynocephalus volans(Philippine flying lemur (mCynVol1 alternate hap 2022))(info)GCA_027409165.1

•Cynocephalus volans(Philippine flying lemur (primary hap 2022 genbank))(info)GCA_027409185.1

•Cynocephalus volans(Philippine flying lemur (primary hap 2022 refseq))(info)GCF_027409185.1

Galeopterus

Galeopterus variegatus

•Galeopterus variegatus(Sunda flying lemur (2014 WashU))(info)GCF_000696425.1

•Galeopterus variegatus(Sunda flying lemur (US047 2019 Broad))(info)GCA_004027255.1

•Colobus angolensis palliatus(Angolan colobus)(info)GCF_000951035.1

•Colobus guereza(mantled guereza (KIZ-2021_5 2022))(info)GCA_021498455.1

Rhinopithecus

Rhinopithecus bieti

•Rhinopithecus bieti(black snub-nosed monkey (Rb0 v2 refseq 2016))(info)GCF_001698545.2

•Rhinopithecus bieti(black snub-nosed monkey (Rb0 v1 genbank 2016))(info)GCA_001698545.1

•Rhinopithecus bieti(black snub-nosed monkey (Rb0 v1 refseq 2016))(info)GCF_001698545.1

•Rhinopithecus strykeri(Burmese snub-nosed monkey (KIZ-2021_23 2022))(info)GCA_023764705.1

Rhinopithecus roxellana

•Rhinopithecus roxellana(golden snub-nosed monkey (2019 Northwest U))(info)GCF_007565055.1

•Rhinopithecus roxellana(golden snub-nosed monkey (2014 Novogene))(info)GCA_000769185.1

Pygathrix

•Pygathrix nigripes(black-shanked douc langur (KIZ-2021_22 2022))(info)GCA_023764695.1

•Pygathrix nemaeus(red shanked douc langur)(info)GCA_004024825.1

Trachypithecus

•Trachypithecus francoisi(Francois's langur)(info)GCF_009764315.1

Trachypithecus phayrei

•Trachypithecus phayrei crepuscula(Phayre's leaf monkey (KIZ-2021_27 2022))(info)GCA_023762245.1

Semnopithecus

•Semnopithecus entellus(Hanuman langur)(info)GCA_004025065.1

Nasalis

•Nasalis larvatus(proboscis monkey)(info)GCA_004027105.1

Piliocolobus

Piliocolobus tephrosceles

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v5 2019))(info)GCF_002776525.5

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v1 2017))(info)GCA_002776525.1

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v2 2018))(info)GCF_002776525.2

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v3 2019))(info)GCF_002776525.3

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v4 2019))(info)GCF_002776525.4

Cercopithecinae

Macaca

•Macaca assamensis(Assam macaque (KIZ-2021_13 2022))(info)GCA_023783095.1

Macaca fascicularis

•Macaca fascicularis(crab-eating macaque (2020 cy0333))(info)GCA_011100615.1

•Macaca fascicularis(crab-eating macaque (v1.1 582-1 2024))(info)GCF_037993035.2

•Macaca fascicularis(crab-eating macaque CE1976F Keio U/RIKEN 2021)(info)GCF_012559485.2

•Macaca fascicularis(crab-eating macaque WashU 2013 refseq)(info)GCF_000364345.1

•Macaca fascicularis(crab-eating macaque (582-1 2024))(info)GCF_037993035.1

•Macaca fascicularis(crab-eating macaque WashU 2013 genbank)(info)GCA_000364345.1

•Macaca silenus(liontail macaque (KIZ-2021_14 2022))(info)GCA_023807365.1

Macaca thibetana

•Macaca thibetana thibetana(Pere David's macaque)(info)GCF_024542745.1

Macaca nemestrina

•Macaca nemestrina(pig-tailed macaque)(info)GCF_000956065.1

•Macaca nemestrina(pig-tailed macaque (mMacNem1hap1 2024 refseq))(info)GCF_043159975.1

•Macaca nemestrina(pig-tailed macaque (mMacNem1hap2 2024))(info)GCA_043161795.1

•Macaca nemestrina(pig-tailed macaque (mMacNem1hap1 2024 genbank))(info)GCA_043159975.1

Macaca mulatta

•Macaca mulatta(Rhesus monkey (2019 U. Washington))(info)GCF_003339765.1

•Macaca mulatta(Rhesus monkey (v1 MMU2019108-1 2025))(info)GCA_049350105.1

•Macaca mulatta(Rhesus monkey (v2 MMU2019108-1 2025 genbank))(info)GCA_049350105.2

•Macaca mulatta(Rhesus monkey (v2 MMU2019108-1 2025 refseq))(info)GCF_049350105.2

•Macaca mulatta(Rhesus monkey (2015 Baylor))(info)GCA_000772875.3

Lophocebus

•Lophocebus aterrimus(black crested mangabey (KIZ-2021_11 2022))(info)GCA_023783235.1

Cercopithecus

•Cercopithecus mitis(blue monkey (Sample3913 2023))(info)GCA_028627265.1

•Cercopithecus neglectus(De Brazza's monkey)(info)GCA_004027615.1

•Cercopithecus albogularis(Sykes' monkey (KIZ-2021_3 2022))(info)GCA_023783535.1

Mandrillus

Mandrillus leucophaeus

•Mandrillus leucophaeus(drill (KB7577 Baylor 2015))(info)GCF_000951045.1

•Mandrillus leucophaeus(drill (KIZ-2021_15 2022))(info)GCA_023783495.1

•Mandrillus sphinx(mandrill (KIZ-2021_16 2022))(info)GCA_023783085.1

Theropithecus

•Theropithecus gelada(gelada)(info)GCF_003255815.1

Chlorocebus

Chlorocebus sabaeus

•Chlorocebus sabaeus(green monkey (Y175hap1 2025))(info)GCF_047675955.1

•Chlorocebus sabaeus(green monkey 1994-021 (2014 refseq))(info)GCF_000409795.2

•Chlorocebus sabaeus(green monkey WHO RCB 10-87)(info)GCF_015252025.1

•Chlorocebus sabaeus(green monkey 1994-021 (2014 genbank))(info)GCA_000409795.2

•Chlorocebus aethiops(grivet (KIZ-2021_4 2022))(info)GCA_023783515.1

Papio

•Papio hamadryas(hamadryas baboon (KIZ-2021_19 2022))(info)GCA_023781915.1

Papio anubis

•Papio anubis(olive baboon (2019 UCSF))(info)GCF_008728515.1

•Papio anubis(olive baboon (2017 HGSC genbank))(info)GCA_000264685.2

•Papio anubis(olive baboon (2017 HGSC RefSeq))(info)GCF_000264685.3

Erythrocebus

Erythrocebus patas

•Erythrocebus patas(red guenon (BS28 Broad 2019))(info)GCA_004027335.1

•Erythrocebus patas(red guenon (KIZ-2021_7 2022))(info)GCA_023783455.1

Cercocebus

•Cercocebus atys(sooty mangabey)(info)GCF_000955945.1

•Pan paniscus(bonobo (v2 primary hap 2024 refseq))(info)GCF_029289425.2

•Pan paniscus(pygmy chimpanzee (maternal 2024))(info)GCA_028858845.2

•Pan paniscus(pygmy chimpanzee (Mhudiblu Carbone 601152 2020))(info)GCF_013052645.1

•Pan paniscus(pygmy chimpanzee (paternal 2024))(info)GCA_028858825.2

•Pan paniscus(pygmy chimpanzee (Ulindi refseq 2015))(info)GCF_000258655.2

•Pan paniscus(pygmy chimpanzee (v2 primary hap 2024 genbank))(info)GCA_029289425.2

•Pan paniscus(pygmy chimpanzee (v1 primary hap 2023))(info)GCF_029289425.1

•Pan paniscus(pygmy chimpanzee (Ulindi genbank 2015))(info)GCA_000258655.2

Pan troglodytes

•Pan troglodytes(chimpanzee (Clint C0471 2018 refseq))(info)GCF_002880755.1

•Pan troglodytes(chimpanzee (v2 AG18354 alternate hap 2024))(info)GCA_028858805.2

•Pan troglodytes(chimpanzee (v2 AG18354 primary hap 2024 genbank))(info)GCA_028858775.2

•Pan troglodytes(chimpanzee (v2 AG18354 primary hap 2024 refseq))(info)GCF_028858775.2

•Pan troglodytes(chimpanzee (v1 AG18354 alternate hap 2023 genbank))(info)GCA_028858805.1

•Pan troglodytes(chimpanzee (v1 AG18354 primary hap 2023 refseq))(info)GCF_028858775.1

•Pan troglodytes(chimpanzee (Clint C0471 2018 genbank))(info)GCA_002880755.3

Gorilla

Gorilla gorilla

Gorilla gorilla gorilla

•Gorilla gorilla gorilla(gorilla (v2.1 KB3781 2024 refseq))(info)GCF_029281585.2

•Gorilla gorilla gorilla(western lowland gorilla (Kamilah 2019))(info)GCF_008122165.1

•Gorilla gorilla gorilla(western lowland gorilla (maternal KB3781 2024))(info)GCA_028885495.2

•Gorilla gorilla gorilla(western lowland gorilla (paternal KB3781 2024))(info)GCA_028885475.2

•Gorilla gorilla gorilla(western lowland gorilla (v2.1 KB3781 2024 genbank))(info)GCA_029281585.3

•Gorilla gorilla gorilla(western lowland gorilla (v1.1 KB3781 2023))(info)GCF_029281585.1

•Gorilla gorilla gorilla(western lowland gorilla (Susie 2016))(info)GCA_900006655.3

•Gorilla gorilla gorilla(western lowland gorilla (v2.0 KB3781 2024 genbank))(info)GCA_029281585.2

Homo

Homo sapiens

•Homo sapiens(human (HG00097 hap1 2024))(info)GCA_044165215.1

•Homo sapiens(human (HG00097 hap2 2024))(info)GCA_044164745.1

•Homo sapiens(human (HG00099 hap1 2024))(info)GCA_042032525.1

•Homo sapiens(human (HG00099 hap2 2024))(info)GCA_042031945.1

•Homo sapiens(human (HG00126 hap1 2024))(info)GCA_042078065.1

•Homo sapiens(human (HG00126 hap2 2024))(info)GCA_042077875.1

•Homo sapiens(human (HG00128 hap1 2024))(info)GCA_042078025.1

•Homo sapiens(human (HG00128 hap2 2024))(info)GCA_042077885.1

•Homo sapiens(human (HG00133 hap1 2024))(info)GCA_042078005.1

•Homo sapiens(human (HG00133 hap2 2024))(info)GCA_042077855.1

•Homo sapiens(human (HG00140 hap1 2024))(info)GCA_042031265.1

•Homo sapiens(human (HG00140 hap2 2024))(info)GCA_042030705.1

•Homo sapiens(human (HG00146 hap1 2024))(info)GCA_042077995.1

•Homo sapiens(human (HG00146 hap2 2024))(info)GCA_042078085.1

•Homo sapiens(human (HG00232 hap1 2024))(info)GCA_042077985.1

•Homo sapiens(human (HG00232 hap2 2024))(info)GCA_042077745.1

•Homo sapiens(human (HG00235 hap1 2024))(info)GCA_044165645.1

•Homo sapiens(human (HG00235 hap2 2024))(info)GCA_044165735.1

•Homo sapiens(human (HG00253 hap1 2024))(info)GCA_044166805.1

•Homo sapiens(human (HG00253 hap2 2024))(info)GCA_044166835.1

•Homo sapiens(human (HG00272 hap1 2024))(info)GCA_044166515.1

•Homo sapiens(human (HG00272 hap2 2024))(info)GCA_044166665.1

•Homo sapiens(human (HG00280 hap1 2024))(info)GCA_042031275.1

•Homo sapiens(human (HG00280 hap2 2024))(info)GCA_042030605.1

•Homo sapiens(human (HG00290 hap1 2024))(info)GCA_042077965.1

•Homo sapiens(human (HG00290 hap2 2024))(info)GCA_042077735.1

•Homo sapiens(human (HG00320 hap1 2024))(info)GCA_042077865.1

•Homo sapiens(human (HG00320 hap2 2024))(info)GCA_042077765.1

•Homo sapiens(human (HG00321 hap1 2024))(info)GCA_042077015.1

•Homo sapiens(human (HG00321 hap2 2024))(info)GCA_042076825.1

•Homo sapiens(human (HG00323 hap1 2024))(info)GCA_042032465.1

•Homo sapiens(human (HG00323 hap2 2024))(info)GCA_042031775.1

•Homo sapiens(human (HG00329 hap1 2024))(info)GCA_044166575.1

•Homo sapiens(human (HG00329 hap2 2024))(info)GCA_044166465.1

•Homo sapiens(human (HG00344 hap1 2024))(info)GCA_044166765.1

•Homo sapiens(human (HG00344 hap2 2024))(info)GCA_044166845.1

•Homo sapiens(human (HG00350 hap1 2024))(info)GCA_044167235.1

•Homo sapiens(human (HG00350 hap2 2024))(info)GCA_044167285.1

•Homo sapiens(human (HG00408 mat 2024))(info)GCA_041900245.1

•Homo sapiens(human (HG00408 pat 2024))(info)GCA_041900255.1

•Homo sapiens(human (HG00423 mat 2024))(info)GCA_042076545.1

•Homo sapiens(human (HG00423 pat 2024))(info)GCA_042076665.1

•Homo sapiens(human (HG00438 mat 2024))(info)GCA_018471515.2

•Homo sapiens(human (HG00438 pat 2024))(info)GCA_018472595.2

•Homo sapiens(human (HG00544 mat 2024))(info)GCA_042076565.1

•Homo sapiens(human (HG00544 pat 2024))(info)GCA_042076675.1

•Homo sapiens(human (HG00558 mat 2024))(info)GCA_042036935.1

•Homo sapiens(human (HG00558 pat 2024))(info)GCA_042037725.1

•Homo sapiens(human (HG00597 mat 2024))(info)GCA_041900265.1

•Homo sapiens(human (HG00597 pat 2024))(info)GCA_041900365.1

•Homo sapiens(human (HG00609 mat 2024))(info)GCA_042027095.1

•Homo sapiens(human (HG00609 pat 2024))(info)GCA_042027545.1

•Homo sapiens(human (HG00621 mat 2024))(info)GCA_018472605.2

•Homo sapiens(human (HG00621 pat 2024))(info)GCA_018472575.2

•Homo sapiens(human (HG00639 mat 2024))(info)GCA_042037155.1

•Homo sapiens(human (HG00639 pat 2024))(info)GCA_042037765.1

•Homo sapiens(human (HG00642 mat 2024))(info)GCA_042028155.1

•Homo sapiens(human (HG00642 pat 2024))(info)GCA_042028805.1

•Homo sapiens(human (HG00658 mat 2024))(info)GCA_042037715.1

•Homo sapiens(human (HG00658 pat 2024))(info)GCA_042037975.1

•Homo sapiens(human (HG00673 mat 2024))(info)GCA_018472565.2

•Homo sapiens(human (HG00673 pat 2024))(info)GCA_018472585.2

•Homo sapiens(human (HG00706 mat 2024))(info)GCA_046116005.1

•Homo sapiens(human (HG00706 pat 2024))(info)GCA_046116065.1

•Homo sapiens(human (HG00733 mat 2024))(info)GCA_018506975.2

•Homo sapiens(human (HG00733 pat 2024))(info)GCA_018506955.2

•Homo sapiens(human (HG00735 mat 2024))(info)GCA_018472765.3

•Homo sapiens(human (HG00735 pat 2024))(info)GCA_018472715.2

•Homo sapiens(human (HG00738 mat 2024))(info)GCA_042028935.1

•Homo sapiens(human (HG00738 pat 2024))(info)GCA_042028835.1

•Homo sapiens(human (HG00741 mat 2024))(info)GCA_018471095.2

•Homo sapiens(human (HG00741 pat 2024))(info)GCA_018471105.2

•Homo sapiens(human (HG01071 mat 2024))(info)GCA_018472685.2

•Homo sapiens(human (HG01071 pat 2024))(info)GCA_018472725.2

•Homo sapiens(human (HG01074 mat 2024))(info)GCA_042037735.1

•Homo sapiens(human (HG01074 pat 2024))(info)GCA_042037995.1

•Homo sapiens(human (HG01081 mat 2024))(info)GCA_042037225.1

•Homo sapiens(human (HG01081 pat 2024))(info)GCA_042037825.1

•Homo sapiens(human (HG01099 mat 2024))(info)GCA_042026525.1

•Homo sapiens(human (HG01099 pat 2024))(info)GCA_042027475.1

•Homo sapiens(human (HG01106 mat 2024))(info)GCA_018471345.2

•Homo sapiens(human (HG01106 pat 2024))(info)GCA_018471075.2

•Homo sapiens(human (HG01109 mat 2024))(info)GCA_018504365.2

•Homo sapiens(human (HG01109 pat 2024))(info)GCA_018504645.2

•Homo sapiens(human (HG01123 mat 2024))(info)GCA_018469665.2

•Homo sapiens(human (HG01123 pat 2024))(info)GCA_018469695.2

•Homo sapiens(human (HG01150 mat 2024))(info)GCA_042037355.1

•Homo sapiens(human (HG01150 pat 2024))(info)GCA_042037855.1

•Homo sapiens(human (HG01167 hap1 2024))(info)GCA_044167135.1

•Homo sapiens(human (HG01167 hap2 2024))(info)GCA_044166785.1

•Homo sapiens(human (HG01175 mat 2024))(info)GCA_018471085.2

•Homo sapiens(human (HG01175 pat 2024))(info)GCA_018471065.2

•Homo sapiens(human (HG01192 mat 2024))(info)GCA_041900275.1

•Homo sapiens(human (HG01192 pat 2024))(info)GCA_041900145.1

•Homo sapiens(human (HG01243 John Hopkins 2021))(info)GCA_018873775.2

•Homo sapiens(human (HG01243 mat 2024))(info)GCA_018504375.2

•Homo sapiens(human (HG01243 pat 2024))(info)GCA_018504045.2

•Homo sapiens(human (HG01252 mat 2024))(info)GCA_042038095.1

•Homo sapiens(human (HG01252 pat 2024))(info)GCA_042038865.1

•Homo sapiens(human (HG01255 mat 2024))(info)GCA_042028895.1

•Homo sapiens(human (HG01255 pat 2024))(info)GCA_042029915.1

•Homo sapiens(human (HG01258 mat 2024))(info)GCA_018469405.2

•Homo sapiens(human (HG01258 pat 2024))(info)GCA_018469675.2

•Homo sapiens(human (HG01261 mat 2024))(info)GCA_041899995.1

•Homo sapiens(human (HG01261 pat 2024))(info)GCA_041900235.1

•Homo sapiens(human (HG01346 mat 2024))(info)GCA_042028165.1

•Homo sapiens(human (HG01346 pat 2024))(info)GCA_042028795.1

•Homo sapiens(human (HG01358 mat 2024))(info)GCA_018469865.2

•Homo sapiens(human (HG01358 pat 2024))(info)GCA_018469965.2

•Homo sapiens(human (HG01361 mat 2024))(info)GCA_018469685.2

•Homo sapiens(human (HG01361 pat 2024))(info)GCA_018469705.2

•Homo sapiens(human (HG01433 mat 2024))(info)GCA_042027645.1

•Homo sapiens(human (HG01433 pat 2024))(info)GCA_042028645.1

•Homo sapiens(human (HG01496 mat 2024))(info)GCA_042027145.1

•Homo sapiens(human (HG01496 pat 2024))(info)GCA_042027595.1

•Homo sapiens(human (HG01530 hap1 2024))(info)GCA_042034285.1

•Homo sapiens(human (HG01530 hap2 2024))(info)GCA_042034145.1

•Homo sapiens(human (HG01784 hap1 2024))(info)GCA_042034305.1

•Homo sapiens(human (HG01784 hap2 2024))(info)GCA_042034175.1

•Homo sapiens(human (HG01786 hap1 2024))(info)GCA_042076995.1

•Homo sapiens(human (HG01786 hap2 2024))(info)GCA_042076735.1

•Homo sapiens(human (HG01884 mat 2024))(info)GCA_042027665.1

•Homo sapiens(human (HG01884 pat 2024))(info)GCA_042028275.1

•Homo sapiens(human (HG01891 mat 2024))(info)GCA_018467155.2

•Homo sapiens(human (HG01891 pat 2024))(info)GCA_018467165.2

•Homo sapiens(human (HG01928 mat 2024))(info)GCA_018472695.2

•Homo sapiens(human (HG01928 pat 2024))(info)GCA_018472705.2

•Homo sapiens(human (HG01934 mat 2024))(info)GCA_042038345.1

•Homo sapiens(human (HG01934 pat 2024))(info)GCA_042038875.1

•Homo sapiens(human (HG01940 mat 2024))(info)GCA_042037435.1

•Homo sapiens(human (HG01940 pat 2024))(info)GCA_042037875.1

•Homo sapiens(human (HG01943 mat 2024))(info)GCA_042076535.1

•Homo sapiens(human (HG01943 pat 2024))(info)GCA_042076525.1

•Homo sapiens(human (HG01952 mat 2024))(info)GCA_018471545.2

•Homo sapiens(human (HG01952 pat 2024))(info)GCA_018471555.2

•Homo sapiens(human (HG01960 mat 2024))(info)GCA_042037445.1

•Homo sapiens(human (HG01960 pat 2024))(info)GCA_042037895.1

•Homo sapiens(human (HG01969 mat 2024))(info)GCA_042037555.1

•Homo sapiens(human (HG01969 pat 2024))(info)GCA_042037885.1

•Homo sapiens(human (HG01975 mat 2024))(info)GCA_045999905.1

•Homo sapiens(human (HG01975 pat 2024))(info)GCA_046000135.1

•Homo sapiens(human (HG01978 mat 2024))(info)GCA_018472845.2

•Homo sapiens(human (HG01978 pat 2024))(info)GCA_018472865.2

•Homo sapiens(human (HG01981 mat 2024))(info)GCA_042027065.1

•Homo sapiens(human (HG01981 pat 2024))(info)GCA_042027505.1

•Homo sapiens(human (HG01993 mat 2024))(info)GCA_042027655.1

•Homo sapiens(human (HG01993 pat 2024))(info)GCA_042028705.1

•Homo sapiens(human (HG02004 mat 2024))(info)GCA_042027105.1

•Homo sapiens(human (HG02004 pat 2024))(info)GCA_042027455.1

•Homo sapiens(human (HG02015 mat 2024))(info)GCA_041900105.1

•Homo sapiens(human (HG02015 pat 2024))(info)GCA_041900165.1

•Homo sapiens(human (HG02027 mat 2024))(info)GCA_042030185.1

•Homo sapiens(human (HG02027 pat 2024))(info)GCA_042030215.1

•Homo sapiens(human (HG02040 hap1 2024))(info)GCA_042032555.1

•Homo sapiens(human (HG02040 hap2 2024))(info)GCA_042031805.1

•Homo sapiens(human (HG02055 mat 2024))(info)GCA_018506125.2

•Homo sapiens(human (HG02055 pat 2024))(info)GCA_018505855.2

•Homo sapiens(human (HG02056 mat 2024))(info)GCA_041900015.1

•Homo sapiens(human (HG02056 pat 2024))(info)GCA_041900085.1

•Homo sapiens(human (HG02071 mat 2024))(info)GCA_042036105.1

•Homo sapiens(human (HG02071 pat 2024))(info)GCA_042036435.1

•Homo sapiens(human (HG02074 mat 2024))(info)GCA_042036205.1

•Homo sapiens(human (HG02074 pat 2024))(info)GCA_042036445.1

•Homo sapiens(human (HG02080 mat 2024))(info)GCA_018504085.2

•Homo sapiens(human (HG02080 pat 2024))(info)GCA_018504055.2

•Homo sapiens(human (HG02083 mat 2024))(info)GCA_042030175.1

•Homo sapiens(human (HG02083 pat 2024))(info)GCA_042030135.1

•Homo sapiens(human (HG02109 mat 2024))(info)GCA_018505825.2

•Homo sapiens(human (HG02109 pat 2024))(info)GCA_018505865.2

•Homo sapiens(human (HG02129 mat 2024))(info)GCA_041900385.1

•Homo sapiens(human (HG02129 pat 2024))(info)GCA_041899985.1

•Homo sapiens(human (HG02132 mat 2024))(info)GCA_042029645.1

•Homo sapiens(human (HG02132 pat 2024))(info)GCA_042030125.1

•Homo sapiens(human (HG02135 mat 2024))(info)GCA_042036245.1

•Homo sapiens(human (HG02135 pat 2024))(info)GCA_042036495.1

•Homo sapiens(human (HG02145 mat 2024))(info)GCA_018852585.2

•Homo sapiens(human (HG02145 pat 2024))(info)GCA_018852595.2

•Homo sapiens(human (HG02148 mat 2024))(info)GCA_018471535.2

•Homo sapiens(human (HG02148 pat 2024))(info)GCA_018471525.2

•Homo sapiens(human (HG02155 hap1 2024))(info)GCA_043304525.1

•Homo sapiens(human (HG02155 hap2 2024))(info)GCA_043304655.1

•Homo sapiens(human (HG02165 hap1 2024))(info)GCA_042032565.1

•Homo sapiens(human (HG02165 hap2 2024))(info)GCA_042032115.1

•Homo sapiens(human (HG02178 hap1 2024))(info)GCA_042077705.1

•Homo sapiens(human (HG02178 hap2 2024))(info)GCA_042077755.1

•Homo sapiens(human (HG02257 mat 2024))(info)GCA_018466835.2

•Homo sapiens(human (HG02257 pat 2024))(info)GCA_018466845.2

•Homo sapiens(human (HG02258 mat 2024))(info)GCA_041900135.1

•Homo sapiens(human (HG02258 pat 2024))(info)GCA_041899975.1

•Homo sapiens(human (HG02273 hap1 2024))(info)GCA_042031155.1

•Homo sapiens(human (HG02273 hap2 2024))(info)GCA_042030225.1

•Homo sapiens(human (HG02280 mat 2024))(info)GCA_042026465.1

•Homo sapiens(human (HG02280 pat 2024))(info)GCA_042027485.1

•Homo sapiens(human (HG02293 mat 2024))(info)GCA_042026455.1

•Homo sapiens(human (HG02293 pat 2024))(info)GCA_042027495.1

•Homo sapiens(human (HG02300 mat 2024))(info)GCA_042027635.1

•Homo sapiens(human (HG02300 pat 2024))(info)GCA_042028475.1

•Homo sapiens(human (HG02391 hap1 2024))(info)GCA_042034315.1

•Homo sapiens(human (HG02391 hap2 2024))(info)GCA_042034155.1

•Homo sapiens(human (HG02392 hap1 2024))(info)GCA_046043155.1

•Homo sapiens(human (HG02392 hap2 2024))(info)GCA_046043145.1

•Homo sapiens(human (HG02451 mat 2024))(info)GCA_042026475.1

•Homo sapiens(human (HG02451 pat 2024))(info)GCA_042027135.1

•Homo sapiens(human (HG02486 mat 2024))(info)GCA_018467015.2

•Homo sapiens(human (HG02486 pat 2024))(info)GCA_018467005.2

•Homo sapiens(human (HG02514 mat 2024))(info)GCA_045524175.1

•Homo sapiens(human (HG02514 pat 2024))(info)GCA_045523115.1

•Homo sapiens(human (HG02523 mat 2024))(info)GCA_042029905.1

•Homo sapiens(human (HG02523 pat 2024))(info)GCA_042030115.1

•Homo sapiens(human (HG02559 mat 2024))(info)GCA_018466985.2

•Homo sapiens(human (HG02559 pat 2024))(info)GCA_018466855.2

•Homo sapiens(human (HG02572 mat 2024))(info)GCA_018470445.2

•Homo sapiens(human (HG02572 pat 2024))(info)GCA_018470435.2

•Homo sapiens(human (HG02583 hap1 2024))(info)GCA_042076985.1

•Homo sapiens(human (HG02583 hap2 2024))(info)GCA_042076715.1

•Homo sapiens(human (HG02602 mat 2024))(info)GCA_046000055.1

•Homo sapiens(human (HG02602 pat 2024))(info)GCA_046000095.1

•Homo sapiens(human (HG02615 mat 2024))(info)GCA_042028975.1

•Homo sapiens(human (HG02615 pat 2024))(info)GCA_042029935.1

•Homo sapiens(human (HG02622 mat 2024))(info)GCA_018469875.2

•Homo sapiens(human (HG02622 pat 2024))(info)GCA_018469925.2

•Homo sapiens(human (HG02630 mat 2024))(info)GCA_018469955.2

•Homo sapiens(human (HG02630 pat 2024))(info)GCA_018469945.2

•Homo sapiens(human (HG02647 mat 2024))(info)GCA_042028065.1

•Homo sapiens(human (HG02647 pat 2024))(info)GCA_042028775.1

•Homo sapiens(human (HG02668 mat 2024))(info)GCA_042038585.1

•Homo sapiens(human (HG02668 pat 2024))(info)GCA_042038895.1

•Homo sapiens(human (HG02698 mat 2024))(info)GCA_042029495.1

•Homo sapiens(human (HG02698 pat 2024))(info)GCA_042030045.1

•Homo sapiens(human (HG02717 mat 2024))(info)GCA_018469935.2

•Homo sapiens(human (HG02717 pat 2024))(info)GCA_018470425.2

•Homo sapiens(human (HG02723 mat 2024))(info)GCA_018504065.2

•Homo sapiens(human (HG02723 pat 2024))(info)GCA_018504075.2

•Homo sapiens(human (HG02735 mat 2024))(info)GCA_042076555.1

•Homo sapiens(human (HG02735 pat 2024))(info)GCA_042076445.1

•Homo sapiens(human (HG02738 mat 2024))(info)GCA_046056425.1

•Homo sapiens(human (HG02738 pat 2024))(info)GCA_046056435.1

•Homo sapiens(human (HG02809 mat 2024))(info)GCA_042036255.1

•Homo sapiens(human (HG02809 pat 2024))(info)GCA_042036525.1

•Homo sapiens(human (HG02818 mat 2024))(info)GCA_018503585.2

•Homo sapiens(human (HG02818 pat 2024))(info)GCA_018503575.2

•Homo sapiens(human (HG02841 mat 2024))(info)GCA_045524615.1

•Homo sapiens(human (HG02841 pat 2024))(info)GCA_045523135.1

•Homo sapiens(human (HG02886 mat 2024))(info)GCA_018470455.2

•Homo sapiens(human (HG02886 pat 2024))(info)GCA_018470465.2

•Homo sapiens(human (HG02922 hap1 2024))(info)GCA_042031165.1

•Homo sapiens(human (HG02922 hap2 2024))(info)GCA_042030255.1

•Homo sapiens(human (HG02965 hap1 2024))(info)GCA_042032535.1

•Homo sapiens(human (HG02965 hap2 2024))(info)GCA_042031845.1

•Homo sapiens(human (HG02976 hap1 2024))(info)GCA_042031255.1

•Homo sapiens(human (HG02976 hap2 2024))(info)GCA_042030695.1

•Homo sapiens(human (HG02984 mat 2024))(info)GCA_045524165.1

•Homo sapiens(human (HG02984 pat 2024))(info)GCA_045524125.1

•Homo sapiens(human (HG03017 mat 2024))(info)GCA_042038595.1

•Homo sapiens(human (HG03017 pat 2024))(info)GCA_042038885.1

•Homo sapiens(human (HG03041 mat 2024))(info)GCA_042037625.1

•Homo sapiens(human (HG03041 pat 2024))(info)GCA_042037905.1

•Homo sapiens(human (HG03050 mat 2024))(info)GCA_045524515.1

•Homo sapiens(human (HG03050 pat 2024))(info)GCA_045524245.1

•Homo sapiens(human (HG03098 mat 2024))(info)GCA_018506165.2

•Homo sapiens(human (HG03098 pat 2024))(info)GCA_018506155.2

•Homo sapiens(human (HG03130 hap1 2024))(info)GCA_042032345.1

•Homo sapiens(human (HG03130 hap2 2024))(info)GCA_042031485.1

•Homo sapiens(human (HG03139 hap1 2024))(info)GCA_043304645.1

•Homo sapiens(human (HG03139 hap2 2024))(info)GCA_043304535.1

•Homo sapiens(human (HG03195 hap1 2024))(info)GCA_042031175.1

•Homo sapiens(human (HG03195 hap2 2024))(info)GCA_042030635.1

•Homo sapiens(human (HG03209 hap1 2024))(info)GCA_042032445.1

•Homo sapiens(human (HG03209 hap2 2024))(info)GCA_042031355.1

•Homo sapiens(human (HG03225 hap1 2024))(info)GCA_042076455.1

•Homo sapiens(human (HG03225 hap2 2024))(info)GCA_042076465.1

•Homo sapiens(human (HG03239 mat 2024))(info)GCA_042037705.1

•Homo sapiens(human (HG03239 pat 2024))(info)GCA_042037925.1

•Homo sapiens(human (HG03270 hap1 2024))(info)GCA_042077695.1

•Homo sapiens(human (HG03270 hap2 2024))(info)GCA_042077465.1

•Homo sapiens(human (HG03369 hap1 2024))(info)GCA_044165925.1

•Homo sapiens(human (HG03369 hap2 2024))(info)GCA_044166625.1

•Homo sapiens(human (HG03453 mat 2024))(info)GCA_018472855.2

•Homo sapiens(human (HG03453 pat 2024))(info)GCA_018473305.2

•Homo sapiens(human (HG03470 hap1 2024))(info)GCA_043305115.1

•Homo sapiens(human (HG03470 hap2 2024))(info)GCA_043304965.1

•Homo sapiens(human (HG03471 hap1 2024))(info)GCA_042034215.1

•Homo sapiens(human (HG03471 hap2 2024))(info)GCA_042034105.1

•Homo sapiens(human (HG03486 mat 2024))(info)GCA_018503525.2

•Homo sapiens(human (HG03486 pat 2024))(info)GCA_018503245.2

•Homo sapiens(human (HG03492 mat 2021))(info)GCA_018505845.1

•Homo sapiens(human (HG03492 pat 2021))(info)GCA_018505835.1

•Homo sapiens(human (HG03516 mat 2024))(info)GCA_018469415.2

•Homo sapiens(human (HG03516 pat 2024))(info)GCA_018469425.2

•Homo sapiens(human (HG03521 hap1 2024))(info)GCA_044166285.1

•Homo sapiens(human (HG03521 hap2 2024))(info)GCA_044166645.1

•Homo sapiens(human (HG03540 mat 2024))(info)GCA_018473295.2

•Homo sapiens(human (HG03540 pat 2024))(info)GCA_018473315.2

•Homo sapiens(human (HG03579 mat 2024))(info)GCA_018472825.2

•Homo sapiens(human (HG03579 pat 2024))(info)GCA_018472835.2

•Homo sapiens(human (HG03583 hap1 2024))(info)GCA_042077635.1

•Homo sapiens(human (HG03583 hap2 2024))(info)GCA_042077425.1

•Homo sapiens(human (HG03654 mat 2024))(info)GCA_042029535.1

•Homo sapiens(human (HG03654 pat 2024))(info)GCA_042030035.1

•Homo sapiens(human (HG03669 mat 2024))(info)GCA_042028875.1

•Homo sapiens(human (HG03669 pat 2024))(info)GCA_042029925.1

•Homo sapiens(human (HG03688 mat 2024))(info)GCA_042029545.1

•Homo sapiens(human (HG03688 pat 2024))(info)GCA_042030025.1

•Homo sapiens(human (HG03704 mat 2024))(info)GCA_042026535.1

•Homo sapiens(human (HG03704 pat 2024))(info)GCA_042027445.1

•Homo sapiens(human (HG03710 mat 2024))(info)GCA_042029485.1

•Homo sapiens(human (HG03710 pat 2024))(info)GCA_042030055.1

•Homo sapiens(human (HG03742 hap1 2024))(info)GCA_042034325.1

•Homo sapiens(human (HG03742 hap2 2024))(info)GCA_042034195.1

•Homo sapiens(human (HG03784 hap1 2024))(info)GCA_044166095.1

•Homo sapiens(human (HG03784 hap2 2024))(info)GCA_044165595.1

•Homo sapiens(human (HG03804 mat 2024))(info)GCA_042036285.1

•Homo sapiens(human (HG03804 pat 2024))(info)GCA_042036515.1

•Homo sapiens(human (HG03816 mat 2024))(info)GCA_046116015.1

•Homo sapiens(human (HG03816 pat 2024))(info)GCA_046116025.1

•Homo sapiens(human (HG03831 mat 2024))(info)GCA_042028025.1

•Homo sapiens(human (HG03831 pat 2024))(info)GCA_042028725.1

•Homo sapiens(human (HG03834 mat 2024))(info)GCA_041900115.1

•Homo sapiens(human (HG03834 pat 2024))(info)GCA_041899965.1

•Homo sapiens(human (HG03874 hap1 2024))(info)GCA_042076925.1

•Homo sapiens(human (HG03874 hap2 2024))(info)GCA_042076685.1

•Homo sapiens(human (HG03927 mat 2024))(info)GCA_042028145.1

•Homo sapiens(human (HG03927 pat 2024))(info)GCA_042028845.1

•Homo sapiens(human (HG03942 mat 2024))(info)GCA_042036275.1

•Homo sapiens(human (HG03942 pat 2024))(info)GCA_042036505.1

•Homo sapiens(human (HG04115 mat 2024))(info)GCA_042028945.1

•Homo sapiens(human (HG04115 pat 2024))(info)GCA_042029955.1

•Homo sapiens(human (HG04157 mat 2024))(info)GCA_042036305.1

•Homo sapiens(human (HG04157 pat 2024))(info)GCA_042036535.1

•Homo sapiens(human (HG04160 mat 2024))(info)GCA_042036395.1

•Homo sapiens(human (HG04160 pat 2024))(info)GCA_042036805.1

•Homo sapiens(human (HG04184 mat 2024))(info)GCA_042027765.1

•Homo sapiens(human (HG04184 pat 2024))(info)GCA_042028635.1

•Homo sapiens(human (HG04187 mat 2024))(info)GCA_045999925.1

•Homo sapiens(human (HG04187 pat 2024))(info)GCA_046000115.1

•Homo sapiens(human (HG04199 mat 2024))(info)GCA_042029385.1

•Homo sapiens(human (HG04199 pat 2024))(info)GCA_042030015.1

•Homo sapiens(human (HG04204 mat 2024))(info)GCA_042036425.1

•Homo sapiens(human (HG04204 pat 2024))(info)GCA_042036795.1

•Homo sapiens(human (HG04228 mat 2024))(info)GCA_042036915.1

•Homo sapiens(human (HG04228 pat 2024))(info)GCA_042036925.1

•Homo sapiens(human (HG06807 mat 2024))(info)GCA_046332005.1

•Homo sapiens(human (HG06807 pat 2024))(info)GCA_046332035.1

•Homo sapiens(human (mHomSap3 WGS:JACSEW01 pat 2021))(info)GCA_016700455.2

•Homo sapiens(human (mHomSap3 WGS:JACSEX01 mat 2021))(info)GCA_016695395.2

•Homo sapiens(human (NA12878 2018))(info)GCA_002077035.3

•Homo sapiens(human (NA18505 hap1 2024))(info)GCA_042077605.1

•Homo sapiens(human (NA18505 hap2 2024))(info)GCA_042077345.1

•Homo sapiens(human (NA18508 hap1 2024))(info)GCA_042077095.1

•Homo sapiens(human (NA18508 hap2 2024))(info)GCA_042077155.1

•Homo sapiens(human (NA18522 hap1 2024))(info)GCA_042031325.1

•Homo sapiens(human (NA18522 hap2 2024))(info)GCA_042030975.1

•Homo sapiens(human (NA18565 hap1 2024))(info)GCA_044166395.1

•Homo sapiens(human (NA18565 hap2 2024))(info)GCA_044165725.1

•Homo sapiens(human (NA18570 hap1 2024))(info)GCA_042034345.1

•Homo sapiens(human (NA18570 hap2 2024))(info)GCA_042034465.1

•Homo sapiens(human (NA18608 hap1 2024))(info)GCA_042077625.1

•Homo sapiens(human (NA18608 hap2 2024))(info)GCA_042077335.1

•Homo sapiens(human (NA18620 hap1 2024))(info)GCA_042077615.1

•Homo sapiens(human (NA18620 hap2 2024))(info)GCA_042077305.1

•Homo sapiens(human (NA18747 hap1 2024))(info)GCA_042031315.1

•Homo sapiens(human (NA18747 hap2 2024))(info)GCA_042031405.1

•Homo sapiens(human (NA18879 hap1 2024))(info)GCA_046000005.1

•Homo sapiens(human (NA18879 hap2 2024))(info)GCA_045999895.1

•Homo sapiens(human (NA18906 mat 2024))(info)GCA_018503255.2

•Homo sapiens(human (NA18906 pat 2024))(info)GCA_018503285.2

•Homo sapiens(human (NA18940 hap1 2024))(info)GCA_046332455.1

•Homo sapiens(human (NA18940 hap2 2024))(info)GCA_046332495.1

•Homo sapiens(human (NA18943 hap1 2024))(info)GCA_046332485.1

•Homo sapiens(human (NA18943 hap2 2024))(info)GCA_046332475.1

•Homo sapiens(human (NA18944 hap1 2024))(info)GCA_046332435.1

•Homo sapiens(human (NA18944 hap2 2024))(info)GCA_046332355.1

•Homo sapiens(human (NA18945 hap1 2024))(info)GCA_046332375.1

•Homo sapiens(human (NA18945 hap2 2024))(info)GCA_046332365.1

•Homo sapiens(human (NA18948 hap1 2024))(info)GCA_046332325.1

•Homo sapiens(human (NA18948 hap2 2024))(info)GCA_046332305.1

•Homo sapiens(human (NA18952 hap1 2024))(info)GCA_042077595.1

•Homo sapiens(human (NA18952 hap2 2024))(info)GCA_042077325.1

•Homo sapiens(human (NA18959 hap1 2024))(info)GCA_046332285.1

•Homo sapiens(human (NA18959 hap2 2024))(info)GCA_046332235.1

•Homo sapiens(human (NA18960 hap1 2024))(info)GCA_046332185.1

•Homo sapiens(human (NA18960 hap2 2024))(info)GCA_046332225.1

•Homo sapiens(human (NA18967 hap1 2024))(info)GCA_046332195.1

•Homo sapiens(human (NA18967 hap2 2024))(info)GCA_046332145.1

•Homo sapiens(human (NA18970 hap1 2024))(info)GCA_046332135.1

•Homo sapiens(human (NA18970 hap2 2024))(info)GCA_046332065.1

•Homo sapiens(human (NA18971 hap1 2024))(info)GCA_042032395.1

•Homo sapiens(human (NA18971 hap2 2024))(info)GCA_042031415.1

•Homo sapiens(human (NA18974 hap1 2024))(info)GCA_042077575.1

•Homo sapiens(human (NA18974 hap2 2024))(info)GCA_042077285.1

•Homo sapiens(human (NA18976 hap1 2024))(info)GCA_042077505.1

•Homo sapiens(human (NA18976 hap2 2024))(info)GCA_042077165.1

•Homo sapiens(human (NA18982 hap1 2024))(info)GCA_046332025.1

•Homo sapiens(human (NA18982 hap2 2024))(info)GCA_046332015.1

•Homo sapiens(human (NA18983 hap1 2024))(info)GCA_042032545.1

•Homo sapiens(human (NA18983 hap2 2024))(info)GCA_042031955.1

•Homo sapiens(human (NA19036 hap1 2024))(info)GCA_042077495.1

•Homo sapiens(human (NA19036 hap2 2024))(info)GCA_042077135.1

•Homo sapiens(human (NA19043 hap1 2024))(info)GCA_042031205.1

•Homo sapiens(human (NA19043 hap2 2024))(info)GCA_042030595.1

•Homo sapiens(human (NA19087 hap1 2024))(info)GCA_042034335.1

•Homo sapiens(human (NA19087 hap2 2024))(info)GCA_042034505.1

•Homo sapiens(human (NA19159 hap1 2024))(info)GCA_046056445.1

•Homo sapiens(human (NA19159 hap2 2024))(info)GCA_046056495.1

•Homo sapiens(human (NA19185 hap1 2024))(info)GCA_042035275.1

•Homo sapiens(human (NA19185 hap2 2024))(info)GCA_042034525.1

•Homo sapiens(human (NA19240 mat 2024))(info)GCA_018503275.2

•Homo sapiens(human (NA19240 pat 2024))(info)GCA_018503265.2

•Homo sapiens(human (NA19338 hap1 2024))(info)GCA_042035195.1

•Homo sapiens(human (NA19338 hap2 2024))(info)GCA_042034585.1

•Homo sapiens(human (NA19391 hap1 2024))(info)GCA_042035185.1

•Homo sapiens(human (NA19391 hap2 2024))(info)GCA_042034575.1

•Homo sapiens(human (NA19443 hap1 2024))(info)GCA_042076855.1

•Homo sapiens(human (NA19443 hap2 2024))(info)GCA_042076705.1

•Homo sapiens(human (NA19468 hap1 2024))(info)GCA_042035225.1

•Homo sapiens(human (NA19468 hap2 2024))(info)GCA_042035175.1

•Homo sapiens(human (NA19682 hap1 2024))(info)GCA_044165125.1

•Homo sapiens(human (NA19682 hap2 2024))(info)GCA_044164665.1

•Homo sapiens(human (NA19700 hap1 2024))(info)GCA_042077085.1

•Homo sapiens(human (NA19700 hap2 2024))(info)GCA_042076885.1

•Homo sapiens(human (NA19776 hap1 2024))(info)GCA_044165085.1

•Homo sapiens(human (NA19776 hap2 2024))(info)GCA_044165205.1

•Homo sapiens(human (NA19835 hap1 2024))(info)GCA_044164705.1

•Homo sapiens(human (NA19835 hap2 2024))(info)GCA_044165335.1

•Homo sapiens(human (NA19909 hap1 2024))(info)GCA_044164695.1

•Homo sapiens(human (NA19909 hap2 2024))(info)GCA_044165395.1

•Homo sapiens(human (NA20129 mat 2024))(info)GCA_018504635.2

•Homo sapiens(human (NA20129 pat 2024))(info)GCA_018504625.2

•Homo sapiens(human (NA20282 hap1 2024))(info)GCA_044166585.1

•Homo sapiens(human (NA20282 hap2 2024))(info)GCA_044166065.1

•Homo sapiens(human (NA20346 hap1 2024))(info)GCA_044166545.1

•Homo sapiens(human (NA20346 hap2 2024))(info)GCA_044166135.1

•Homo sapiens(human (NA20503 hap1 2025))(info)GCA_046629205.1

•Homo sapiens(human (NA20503 hap2 2025))(info)GCA_046629565.1

•Homo sapiens(human (NA20752 hap1 2024))(info)GCA_046000145.1

•Homo sapiens(human (NA20752 hap2 2024))(info)GCA_045999885.1

•Homo sapiens(human (NA20762 hap1 2025))(info)GCA_046629215.1

•Homo sapiens(human (NA20762 hap2 2025))(info)GCA_046629575.1

•Homo sapiens(human (NA20799 hap1 2024))(info)GCA_045523085.1

•Homo sapiens(human (NA20799 hap2 2024))(info)GCA_045524135.1

•Homo sapiens(human (NA20805 hap1 2024))(info)GCA_043304975.1

•Homo sapiens(human (NA20805 hap2 2024))(info)GCA_043304515.1

•Homo sapiens(human (NA20806 hap1 2025))(info)GCA_046629235.1

•Homo sapiens(human (NA20806 hap2 2025))(info)GCA_046629225.1

•Homo sapiens(human (NA20809 hap1 2024))(info)GCA_044166435.1

•Homo sapiens(human (NA20809 hap2 2024))(info)GCA_044166615.1

•Homo sapiens(human (NA20827 hap1 2025))(info)GCA_046629585.1

•Homo sapiens(human (NA20827 hap2 2025))(info)GCA_046629265.1

•Homo sapiens(human (NA20850 hap1 2024))(info)GCA_044166535.1

•Homo sapiens(human (NA20850 hap2 2024))(info)GCA_044165565.1

•Homo sapiens(human (NA20870 hap1 2024))(info)GCA_042077485.1

•Homo sapiens(human (NA20870 hap2 2024))(info)GCA_042077145.1

•Homo sapiens(human (NA20905 hap1 2024))(info)GCA_042032625.1

•Homo sapiens(human (NA20905 hap2 2024))(info)GCA_042032335.1

•Homo sapiens(human (NA21093 hap1 2024))(info)GCA_042077025.1

•Homo sapiens(human (NA21093 hap2 2024))(info)GCA_042076875.1

•Homo sapiens(human (NA21102 hap1 2024))(info)GCA_044166315.1

•Homo sapiens(human (NA21102 hap2 2024))(info)GCA_044166635.1

•Homo sapiens(human (NA21106 hap1 2024))(info)GCA_042077005.1

•Homo sapiens(human (NA21106 hap2 2024))(info)GCA_042076865.1

•Homo sapiens(human (NA21110 hap1 2024))(info)GCA_042077475.1

•Homo sapiens(human (NA21110 hap2 2024))(info)GCA_042077185.1

•Homo sapiens(human (NA21144 hap1 2024))(info)GCA_044164725.1

•Homo sapiens(human (NA21144 hap2 2024))(info)GCA_044165025.1

•Homo sapiens(human (NA21309 mat 2024))(info)GCA_018504655.2

•Homo sapiens(human (NA21309 pat 2024))(info)GCA_018504665.2

•Homo sapiens(human (NA24385 mat 2024))(info)GCA_018852615.3

•Homo sapiens(human (NA24385 pat 2024))(info)GCA_018852605.3

•Homo sapiens(human (NA24631 mat 2024))(info)GCA_018506965.2

•Homo sapiens(human (NA24631 pat 2024))(info)GCA_018506945.2

•Homo sapiens(human (RPE-1 hap1 2025))(info)GCA_050656345.1

•Homo sapiens(human (RPE-1 hap2 2025))(info)GCA_050656315.1

•Homo sapiens(human (GRCh38.p14 2022))(info)GCF_000001405.40

•Homo sapiens(human (HG00438.mat 2021))(info)GCA_018471515.1

•Homo sapiens(human (HG00438.pat 2021))(info)GCA_018472595.1

•Homo sapiens(human (HG00621.mat 2021))(info)GCA_018472605.1

•Homo sapiens(human (HG00621.pat 2021))(info)GCA_018472575.1

•Homo sapiens(human (HG00673.mat 2021))(info)GCA_018472565.1

•Homo sapiens(human (HG00673.pat 2021))(info)GCA_018472585.1

•Homo sapiens(human (HG00733 mat 2021))(info)GCA_018506975.1

•Homo sapiens(human (HG00733 pat 2021))(info)GCA_018506955.1

•Homo sapiens(human (HG00735.mat 2021))(info)GCA_018472765.1

•Homo sapiens(human (HG00735.pat 2021))(info)GCA_018472715.1

•Homo sapiens(human (HG00741.mat 2021))(info)GCA_018471095.1

•Homo sapiens(human (HG00741.pat 2021))(info)GCA_018471105.1

•Homo sapiens(human (HG01071.mat 2021))(info)GCA_018472685.1

•Homo sapiens(human (HG01071.pat 2021))(info)GCA_018472725.1

•Homo sapiens(human (HG01106.mat 2021))(info)GCA_018471345.1

•Homo sapiens(human (HG01106.pat 2021))(info)GCA_018471075.1

•Homo sapiens(human (HG01109.mat 2021))(info)GCA_018504365.1

•Homo sapiens(human (HG01109.pat 2021))(info)GCA_018504645.1

•Homo sapiens(human (HG01123.mat 2021))(info)GCA_018469665.1

•Homo sapiens(human (HG01123.pat 2021))(info)GCA_018469695.1

•Homo sapiens(human (HG01175.mat 2021))(info)GCA_018471085.1

•Homo sapiens(human (HG01175.pat 2021))(info)GCA_018471065.1

•Homo sapiens(human (HG01243.mat 2021))(info)GCA_018504375.1

•Homo sapiens(human (HG01243.pat 2021))(info)GCA_018504045.1

•Homo sapiens(human (HG01258.mat 2021))(info)GCA_018469405.1

•Homo sapiens(human (HG01258.pat 2021))(info)GCA_018469675.1

•Homo sapiens(human (HG01358.mat 2021))(info)GCA_018469865.1

•Homo sapiens(human (HG01358.pat 2021))(info)GCA_018469965.1

•Homo sapiens(human (HG01361.mat 2021))(info)GCA_018469685.1

•Homo sapiens(human (HG01361.pat 2021))(info)GCA_018469705.1

•Homo sapiens(human (HG01891.mat 2021))(info)GCA_018467155.1

•Homo sapiens(human (HG01891.pat 2021))(info)GCA_018467165.1

•Homo sapiens(human (HG01928.mat 2021))(info)GCA_018472695.1

•Homo sapiens(human (HG01928.pat 2021))(info)GCA_018472705.1

•Homo sapiens(human (HG01952.mat 2021))(info)GCA_018471545.1

•Homo sapiens(human (HG01952.pat 2021))(info)GCA_018471555.1

•Homo sapiens(human (HG01978.mat 2021))(info)GCA_018472865.1

•Homo sapiens(human (HG01978.pat 2021))(info)GCA_018472845.1

•Homo sapiens(human (HG02055 mat 2021))(info)GCA_018506125.1

•Homo sapiens(human (HG02055 pat 2021))(info)GCA_018505855.1

•Homo sapiens(human (HG02080.mat 2021))(info)GCA_018504085.1

•Homo sapiens(human (HG02080.pat 2021))(info)GCA_018504055.1

•Homo sapiens(human (HG02109 mat 2021))(info)GCA_018505825.1

•Homo sapiens(human (HG02109 pat 2021))(info)GCA_018505865.1

•Homo sapiens(human (HG02145 mat 2021))(info)GCA_018852585.1

•Homo sapiens(human (HG02145 pat 2021))(info)GCA_018852595.1

•Homo sapiens(human (HG02148.mat 2021))(info)GCA_018471535.1

•Homo sapiens(human (HG02148.pat 2021))(info)GCA_018471525.1

•Homo sapiens(human (HG02257.mat 2021))(info)GCA_018466845.1

•Homo sapiens(human (HG02257.pat 2021))(info)GCA_018466835.1

•Homo sapiens(human (HG02486.mat 2021))(info)GCA_018467015.1

•Homo sapiens(human (HG02486.pat 2021))(info)GCA_018467005.1

•Homo sapiens(human (HG02559.mat 2021))(info)GCA_018466985.1

•Homo sapiens(human (HG02559.pat 2021))(info)GCA_018466855.1

•Homo sapiens(human (HG02572.mat 2021))(info)GCA_018470445.1

•Homo sapiens(human (HG02572.pat 2021))(info)GCA_018470435.1

•Homo sapiens(human (HG02622.mat 2021))(info)GCA_018469875.1

•Homo sapiens(human (HG02622.pat 2021))(info)GCA_018469925.1

•Homo sapiens(human (HG02630.mat 2021))(info)GCA_018469955.1

•Homo sapiens(human (HG02630.pat 2021))(info)GCA_018469945.1

•Homo sapiens(human (HG02717.mat 2021))(info)GCA_018469935.1

•Homo sapiens(human (HG02717.pat 2021))(info)GCA_018470425.1

•Homo sapiens(human (HG02723.mat 2021))(info)GCA_018504065.1

•Homo sapiens(human (HG02723.pat 2021))(info)GCA_018504075.1

•Homo sapiens(human (HG02818.mat 2021))(info)GCA_018503585.1

•Homo sapiens(human (HG02818.pat 2021))(info)GCA_018503575.1

•Homo sapiens(human (HG02886.mat 2021))(info)GCA_018470455.1

•Homo sapiens(human (HG02886.pat 2021))(info)GCA_018470465.1

•Homo sapiens(human (HG03098 mat 2021))(info)GCA_018506165.1

•Homo sapiens(human (HG03098 pat 2021))(info)GCA_018506155.1

•Homo sapiens(human (HG03453.mat 2021))(info)GCA_018472855.1

•Homo sapiens(human (HG03453.pat 2021))(info)GCA_018473305.1

•Homo sapiens(human (HG03486 pat 2021))(info)GCA_018503245.1

•Homo sapiens(human (HG03486.mat 2021))(info)GCA_018503525.1

•Homo sapiens(human (HG03516.mat 2021))(info)GCA_018469425.1

•Homo sapiens(human (HG03516.pat 2021))(info)GCA_018469415.1

•Homo sapiens(human (HG03540.mat 2021))(info)GCA_018473295.1

•Homo sapiens(human (HG03540.pat 2021))(info)GCA_018473315.1

•Homo sapiens(human (HG03579.mat 2021))(info)GCA_018472825.1

•Homo sapiens(human (HG03579.pat 2021))(info)GCA_018472835.1

•Homo sapiens(human (NA18906.mat 2021))(info)GCA_018503255.1

•Homo sapiens(human (NA18906.pat 2021))(info)GCA_018503285.1

•Homo sapiens(human (NA19240.mat 2021))(info)GCA_018503275.1

•Homo sapiens(human (NA19240.pat 2021))(info)GCA_018503265.1

•Homo sapiens(human (NA20129 mat 2021))(info)GCA_018504635.1

•Homo sapiens(human (NA20129 pat 2021))(info)GCA_018504625.1

•Homo sapiens(human (NA21309 pat 2021))(info)GCA_018504665.1

•Homo sapiens(human (NA21309.mat 2021))(info)GCA_018504655.1

•Homo sapiens(human (NA24385 HG002 alt pat 2023))(info)GCA_018852605.2

•Homo sapiens(human (NA24385 HG002 pri mat 2023))(info)GCA_018852615.2

•Homo sapiens(human (NA24385.mat 2021))(info)GCA_018852615.1

•Homo sapiens(human (NA24385.mat 2022))(info)GCA_021951015.1

•Homo sapiens(human (NA24385.pat 2021))(info)GCA_018852605.1

•Homo sapiens(human (NA24385.pat 2022))(info)GCA_021950905.1

•Homo sapiens(human (NA24631 mat 2021))(info)GCA_018506965.1

•Homo sapiens(human (NA24631 pat 2021))(info)GCA_018506945.1

Ponginae

Pongo

Pongo pygmaeus

•Pongo pygmaeus(Bornean orangutan (KIZ-2021_21 2022))(info)GCA_023767775.1

•Pongo pygmaeus(Bornean orangutan (v2 AG05252 alternate hap 2024))(info)GCA_028885525.2

•Pongo pygmaeus(Bornean orangutan (v2 AG05252 primary hap 2024 genbank))(info)GCA_028885625.2

•Pongo pygmaeus(Bornean orangutan (v2 AG05252 primary hap 2024 refseq))(info)GCF_028885625.2

•Pongo pygmaeus(Bornean orangutan (v1 AG05252 alternate hap 2023 genbank))(info)GCA_028885525.1

•Pongo pygmaeus(Bornean orangutan (v1 AG05252 primary hap 2023 refseq))(info)GCF_028885625.1

Pongo abelii

•Pongo abelii(Sumatran orangutan (Susie 2018 refseq))(info)GCF_002880775.1

•Pongo abelii(Sumatran orangutan (v2 AG06213 alternate hap 2024))(info)GCA_028885685.2

•Pongo abelii(Sumatran orangutan (v2 AG06213 primary hap 2024 genbank))(info)GCA_028885655.2

•Pongo abelii(Sumatran orangutan (v2 AG06213 primary hap 2024 refseq))(info)GCF_028885655.2

•Pongo abelii(Sumatran orangutan (v1 AG06213 primary hap 2023))(info)GCF_028885655.1

•Pongo abelii(Sumatran orangutan (Susie 2018 genbank))(info)GCA_002880775.3

Hylobatidae

Hoolock

•Hoolock leuconedys(Eastern hoolock gibbon (KIZ-2021_9 2022))(info)GCA_023748175.1

Nomascus

Nomascus leucogenys

•Nomascus leucogenys(northern white-cheeked gibbon (2019 U. Washington))(info)GCF_006542625.1

•Nomascus leucogenys(northern white-cheeked gibbon (2012 GGSC))(info)GCA_000146795.3

•Nomascus siki(southern white-cheeked gibbon (KIZ-2021_17 2022))(info)GCA_023783065.1

Hylobates

•Hylobates pileatus(pileated gibbon (KIZ-2021_10 2022))(info)GCA_021498465.1

Hylobates moloch

•Hylobates moloch(silvery gibbon (v3 HMO894 2021 UC Santa Cruz))(info)GCF_009828535.3

•Hylobates moloch(silvery gibbon (v1 HM0894 2020 UC Santa Cruz))(info)GCF_009828535.1

•Hylobates moloch(silvery gibbon (v2 HMO894 2020 UC Santa Cruz))(info)GCF_009828535.2

Symphalangus

Symphalangus syndactylus

•Symphalangus syndactylus(siamang (KIZ-2021_26 2022))(info)GCA_023761135.1

•Symphalangus syndactylus(siamang gibbon (v2.1 Jambi primary hap 2024 refseq))(info)GCF_028878055.3

•Symphalangus syndactylus(siamang gibbon (v3 Jambi alternate hap 2024))(info)GCA_028878085.3

•Symphalangus syndactylus(siamang (v2 Jambi alternate hap 2024))(info)GCA_028878085.2

•Symphalangus syndactylus(siamang (v1 Jambi primary hap 2023))(info)GCF_028878055.1

•Symphalangus syndactylus(siamang (v2 Jambi primary hap 2024 refseq))(info)GCF_028878055.2

•Symphalangus syndactylus(siamang (v2 Jambi primary hap 2024 genbank))(info)GCA_028878055.2

•Ateles geoffroyi(black-handed spider monkey (BS17 Broad 2019))(info)GCA_004024785.1

•Ateles geoffroyi(black-handed spider monkey (KIZ-2021_1 2022))(info)GCA_023783555.1

Brachyteles

•Brachyteles hypoxanthus(northern woolly spider monkey (MCK_02-PD_2116 2025))(info)GCA_049997475.1

•Brachyteles arachnoides(southern woolly spider monkey (Monalisa primary hap 2025))(info)GCA_047496155.1

Alouattinae

Alouatta

•Alouatta palliata(mantled howler monkey)(info)GCA_004027835.1

•Saimiri boliviensis(Bolivian squirrel monkey (mSaiBol1 primary hap 2025))(info)GCA_048565385.1

•Saimiri boliviensis(Bolivian squirrel monkey (mSaiBol1 primary hap 2025))(info)GCF_048565385.1

Saimiri boliviensis boliviensis

•Saimiri boliviensis boliviensis(Bolivian squirrel monkey (100643 v2.1 BCM 2021))(info)GCF_016699345.2

•Saimiri boliviensis boliviensis(Bolivian squirrel monkey (100643 v2.0 BCM 2021))(info)GCF_016699345.1

•Saimiri boliviensis boliviensis(Bolivian squirrel monkey (3227 Broad 2011))(info)GCF_000235385.1

Callitrichinae

Callithrix

Callithrix jacchus

•Callithrix jacchus(common marmoset (240 primary hap 2025))(info)GCA_049354715.1

•Callithrix jacchus(white-tufted-ear marmoset (220 alternate hap 2025))(info)GCA_049354675.1

•Callithrix jacchus(white-tufted-ear marmoset (220 primary hap 2025))(info)GCA_049354665.1

•Callithrix jacchus(white-tufted-ear marmoset (240 alternate hap 2025))(info)GCA_049354655.1

•Callithrix jacchus(white-tufted-ear marmoset (cj1700 2020))(info)GCF_009663435.1

•Callithrix jacchus(white-tufted-ear marmoset (maternal 2020))(info)GCA_011078405.1

•Callithrix jacchus(white-tufted-ear marmoset (paternal X 2020))(info)GCA_011100555.1

•Callithrix jacchus(white-tufted-ear marmoset (v1.2 2021 refseq))(info)GCF_011100555.1

•Callithrix jacchus(white-tufted-ear marmoset (v1.2 paternal 2021))(info)GCA_011100535.2

•Callithrix jacchus(white-tufted-ear marmoset (v1 paternal hap 2020))(info)GCA_011100535.1

•Callithrix jacchus(white-tufted-ear marmoset (v1.2 2021 genbank))(info)GCA_011100555.2

•Callithrix jacchus(white-tufted-ear marmoset (2010 Wash U))(info)GCF_000004665.1

•Callithrix jacchus(white-tufted-ear marmoset (CJ-08-46 2017))(info)GCA_002754865.1

•Callithrix jacchus(white-tufted-ear marmoset (cj1700 genbank))(info)GCA_009663435.1

Saguinus

•Saguinus oedipus(cotton-top tamarin (B95-8 2023))(info)GCA_031835075.1

•Saguinus midas(Midas tamarin (KIZ-2021_24 2022))(info)GCA_021498475.1

•Saguinus imperator(tamarin)(info)GCA_004024885.1

Leontopithecus

•Leontopithecus rosalia(golden lion tamarin (Coari 2023))(info)GCA_028533165.1

Cebinae

Cebus

•Cebus imitator(Panamanian white-faced capuchin)(info)GCF_001604975.1

Cebus albifrons

•Cebus albifrons(white-fronted capuchin (BS31 Broad 2019))(info)GCA_004027755.1

•Cebus albifrons(white-fronted capuchin (KIZ-2021_2 2022))(info)GCA_023783575.1

Sapajus

Sapajus apella

•Sapajus apella(tufted capuchin (KIZ-2021_25 2022))(info)GCA_023762875.2

•Sapajus apella(tufted capuchin (Saskatoon/1434 2019))(info)GCF_009761245.1

Pitheciidae

Callicebinae

Plecturocebus

•Plecturocebus donacophilus(Bolivian titi)(info)GCA_004027715.1

Pitheciinae

Pithecia

Pithecia pithecia

•Pithecia pithecia(white-faced saki (BS33 Broad 2019))(info)GCA_004026645.1

•Pithecia pithecia(white-faced saki (KIZ-2021_20 2022))(info)GCA_023779675.1

Aotidae

Aotus

Aotus nancymaae

•Aotus nancymaae(Ma's night monkey (86115 2017))(info)GCF_000952055.2

•Aotus nancymaae(Ma's night monkey (86718 primary hap 2023))(info)GCF_030222135.1

•Aotus nancymaae(Ma's night monkey genbank)(info)GCA_000952055.2

Tarsiiformes

Tarsiidae

Cephalopachus

•Cephalopachus bancanus(Horsfield's tarsier (2022))(info)GCA_027257055.1

Carlito

•Carlito syrichta(Philippine tarsier)(info)GCF_000164805.1

Daubentonia madagascariensis

•Daubentonia madagascariensis(aye-aye (BS11 Broad 2019))(info)GCA_004027145.1

•Daubentonia madagascariensis(aye-aye (KIZ-2021_6 2022))(info)GCA_023783475.1

Lemuriformes

Indriidae

Indri

•Indri indri(babakoto)(info)GCA_004363605.1

Propithecus

Propithecus coquereli

•Propithecus coquereli(Coquerel's sifaka 6110/Marcella (2015 refseq))(info)GCF_000956105.1

•Propithecus coquereli(Coquerel's sifaka 6110/Marcella (2015 genbank))(info)GCA_000956105.1

Lemuridae

Eulemur

•Eulemur rufifrons(Bennett's brown lemur (Redbay 2024))(info)GCF_041146395.1

•Eulemur fulvus(brown lemur)(info)GCA_004027275.1

•Eulemur mongoz(mongoose lemur (Sample1262 2023))(info)GCA_028534055.1

•Eulemur flavifrons(Sclater's lemur (Harlow 2015))(info)GCA_001262665.1

Prolemur

•Prolemur simus(greater bamboo lemur (KIAN8.4 2018))(info)GCA_003258685.1

Lemur

Lemur catta

•Lemur catta(ring-tailed lemur (KIZ-2021_28 2022))(info)GCA_023759835.1

•Lemur catta(ring-tailed lemur (mLemCat1 alternate hap 2021))(info)GCA_020740595.1

•Lemur catta(ring-tailed lemur (primary hap 2021))(info)GCF_020740605.2

•Lemur catta(ring-tailed lemur BS26 Broad 2019)(info)GCA_004024665.1

Varecia

•Varecia variegata(ruffed lemur (Sample0354 2023))(info)GCA_028533085.1

Cheirogaleidae

Mirza

•Mirza coquereli(Coquerel's mouse lemur)(info)GCA_004024645.1

•Mirza zaza(northern giant mouse lemur (DLC2301 2019))(info)GCA_008750895.1

Microcebus

•Microcebus ravelobensis(golden-brown mouse lemur (RMR55 2019))(info)GCA_008750975.1

Microcebus murinus

•Microcebus murinus(gray mouse lemur (2017))(info)GCF_000165445.2

•Microcebus murinus(gray mouse lemur (Inina 2025))(info)GCF_040939455.1

•Microcebus murinus(gray mouse lemur genbank)(info)GCA_000165445.3

•Microcebus lehilahytsara(Mittermeier's mouse lemur (MBB011 2019))(info)GCA_008750955.1

•Microcebus tavaratra(northern rufous mouse lemur (RMR71 2019))(info)GCA_008750935.1

•Microcebus griseorufus(reddish-gray mouse lemur (RMR66 2019))(info)GCA_008750995.1

Cheirogaleus

•Cheirogaleus medius(lesser dwarf lemur)(info)GCA_004024725.1

Lorisiformes

Lorisidae

Nycticebus

•Nycticebus bengalensis(Bengal slow loris (KIZ-2021_18 2022))(info)GCA_023898255.1

Nycticebus coucang

•Nycticebus coucang(slow loris (alternate hap 2022))(info)GCA_027406535.1

•Nycticebus coucang(slow loris (primary hap 2022))(info)GCF_027406575.1

•Nycticebus coucang(slow loris (BS32 2019))(info)GCA_004027815.1

•Nycticebus coucang(slow loris (primary hap 2022 genbank))(info)GCA_027406575.1

Loris

•Loris tardigradus(slender loris (KIZ-2021_12 2022))(info)GCA_023783135.1

Galagidae

Galago

•Galago moholi(Moholi bushbaby (KIZ-2021_8 2022))(info)GCA_023783435.1

Otolemur

•Otolemur garnettii(small-eared galago)(info)GCF_000181295.1

•Lycaon pictus(African hunting dog)(info)GCA_001887905.1

•Lycaon pictus(African hunting dog (LycPic1hap1 2024))(info)GCA_040955645.1

•Lycaon pictus(African hunting dog (LycPic1hap2 2024))(info)GCA_040955705.1

Vulpes

Vulpes lagopus

•Vulpes lagopus(Arctic fox (Blue_001 2021 refseq))(info)GCF_018345385.1

•Vulpes lagopus(Arctic fox (US066 2019 Broad))(info)GCA_004023825.1

•Vulpes corsac(Corsac fox (zsh2022 2023))(info)GCA_030463245.1

Vulpes vulpes

•Vulpes vulpes(red fox (BD-2025 2025))(info)GCF_048418805.1

•Vulpes vulpes(red fox (hap1 2024))(info)GCA_964106825.2

•Vulpes vulpes(red fox (hap2 2024))(info)GCA_964106925.2

•Vulpes vulpes(red fox (tameXaggressive cross 2018))(info)GCF_003160815.1

•Vulpes ferrilata(Tibetan sand fox (lyu1992 2022))(info)GCA_024500485.1

Canis

•Canis latrans(coyote (coyote_06102 2023))(info)GCA_034620425.1

Canis lupus

•Canis lupus(gray wolf (2021))(info)GCA_905319855.2

•Canis lupus(gray wolf (alternate hap 2021))(info)GCA_905319845.1

Canis lupus dingo

•Canis lupus dingo(dingo (2020 Alpine COOINDA U.NSW))(info)GCF_012295265.1

•Canis lupus dingo(dingo (Sandy 2020 James Cook U))(info)GCF_003254725.2

Canis lupus familiaris

•Canis lupus familiaris(dog (Basenji MU ID 185726 2019))(info)GCA_004886185.2

•Canis lupus familiaris(dog (Basenji UNSW-BAS-2019 2021))(info)GCA_013276365.2

•Canis lupus familiaris(dog (Bernese Mountain Dog BD 2023))(info)GCA_031010765.1

•Canis lupus familiaris(dog (Bernese Mountain Dog OD 2023))(info)GCA_031010635.1

•Canis lupus familiaris(dog (boxer Tasha 2011))(info)GCF_000002285.3

•Canis lupus familiaris(dog (boxer Tasha 2020))(info)GCF_000002285.5

•Canis lupus familiaris(dog (Cairn Terrier CA611 2023))(info)GCA_031010295.1

•Canis lupus familiaris(dog (German shepard Mischka 2020))(info)GCF_011100685.1

•Canis lupus familiaris(dog (German Shepherd Nala 2020))(info)GCA_008641055.3

•Canis lupus familiaris(dog (Labrador retriever 2023))(info)GCA_031165255.1

•Canis lupus familiaris(dog (labrador SID07034 2020))(info)GCF_014441545.1

•Canis lupus familiaris(dog (BS72 2019 Broad))(info)GCA_004027395.1

Canis lupus baileyi

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 refseq))(info)GCF_048164855.1

•Canis lupus baileyi(Mexican gray wolf (hap2 2025))(info)GCA_048164845.1

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 genbank))(info)GCA_048164855.1

•Canis aureus(golden jackal (CA01 2025))(info)GCF_053574225.1

Urocyon

•Urocyon cinereoargenteus(gray fox (Vermont ataVT051 2023))(info)GCA_032313775.1

Nyctereutes

•Nyctereutes procyonoides(raccoon dog (2021))(info)GCF_905146905.1

Ursidae

Ursus

Ursus americanus

•Ursus americanus(American black bear (L20-20 alternate hap 2022))(info)GCA_024610745.1

•Ursus americanus(American black bear (L20-20 primary hap 2022))(info)GCA_024610735.1

•Ursus americanus(American black bear (UA15103 2021))(info)GCF_020975775.1

Ursus arctos

•Ursus arctos(brown bear (v2.0 North America Adak 2023))(info)GCF_023065955.2

•Ursus arctos(brown bear (v1.0 2022 WashU))(info)GCF_023065955.1

Ursus arctos horribilis

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v2 2018))(info)GCF_003584765.2

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v1 2018))(info)GCF_003584765.1

Ursus maritimus

•Ursus maritimus(polar bear (Baiyulong BGI 2014 refseq))(info)GCF_000687225.1

•Ursus maritimus(polar bear (UCSC 2021))(info)GCF_017311325.1

•Ursus maritimus(polar bear (Baiyulong BGI 2014 genbank))(info)GCA_000687225.1

Ailuropoda

Ailuropoda melanoleuca

•Ailuropoda melanoleuca(giant panda (Jingjing v3 2020))(info)GCF_002007445.2

•Ailuropoda melanoleuca(giant panda (2009 BGI))(info)GCF_000004335.2

•Ailuropoda melanoleuca(giant panda (Jingjing v1 2017))(info)GCA_002007445.1

•Ailuropoda melanoleuca(giant panda (Jingjing v2 genbank 2020))(info)GCA_002007445.2

•Ailuropoda melanoleuca(giant panda (Jingjing v2 refseq 2020))(info)GCF_002007445.1

•Neogale vison(American mink (2018))(info)GCA_900108605.1

•Neogale vison(American mink (hap1 2024))(info)GCA_964106545.1

•Neogale vison(American mink (hap2 2024))(info)GCA_964106205.1

•Neogale vison(American mink (M4711 2021 Dalhousie U))(info)GCF_020171115.1

Mustela

•Mustela nigripes(black-footed ferret (SB6536 2022))(info)GCF_022355385.1

Mustela putorius

Mustela putorius furo

•Mustela putorius furo(domestic ferret (JIRA1106 JCVI 2020))(info)GCF_011764305.1

•Mustela putorius furo(domestic ferret (Sable 2011 Broad))(info)GCA_000239315.1

•Mustela putorius furo(domestic ferret (Sable ID 1420 FGSC 2011))(info)GCF_000215625.1

Mustela erminea

•Mustela erminea(ermine (2020))(info)GCF_009829155.1

•Mustela erminea(ermine (alternate hap 2020))(info)GCA_009829165.1

Mustela lutreola

•Mustela lutreola(European mink (alternate hap 2023))(info)GCA_030435785.1

•Mustela lutreola(European mink (primary hap 2023 refseq))(info)GCF_030435805.1

•Mustela lutreola(European mink (primary hap 2023 genbank))(info)GCA_030435805.1

Mustela nivalis

•Mustela nivalis(least weasel (hap1.1 2025))(info)GCA_964662115.1

•Mustela nivalis(least weasel (hap2.1 2025))(info)GCA_964662095.1

Guloninae

Gulo

Gulo gulo

•Gulo gulo luscus(American wolverine (FN33715 2022))(info)GCA_024509225.1

Martes

•Martes martes(European pine marten (primary hap 2023))(info)GCA_963455335.1

Melinae

Meles

Meles meles

•Meles meles(Eurasian badger (2021))(info)GCA_922990625.1

•Meles meles(Eurasian badger (v3.2 2022))(info)GCA_922984935.2

•Meles meles(Eurasian badger (v3.1 2021))(info)GCF_922984935.1

Lutrinae

Lutra

Lutra lutra

•Lutra lutra(Eurasian river otter (2020))(info)GCF_902655055.1

•Lutra lutra(Eurasian river otter (alternate hap 2019))(info)GCA_902653095.1

Pteronura

•Pteronura brasiliensis(giant otter)(info)GCA_004024605.1

Lontra

•Lontra canadensis(northern American river otter)(info)GCF_010015895.1

Enhydra

Enhydra lutris

Enhydra lutris kenyoni

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 refseq))(info)GCF_002288905.1

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 genbank))(info)GCA_002288905.2

Mellivoriane

Mellivora

•Mellivora capensis(ratel)(info)GCA_004024625.1

Ailuridae

Ailurus

•Ailurus styani(lesser panda (RP43 2017))(info)GCA_002007465.1

Mephitidae

Spilogale

•Spilogale gracilis(western spotted skunk)(info)GCA_004023965.1

Pinnipedia

Otariidae

Zalophus

Zalophus californianus

•Zalophus californianus(California sea lion (alternate hap 2019))(info)GCA_009762295.1

•Zalophus californianus(California sea lion (LMU 2018 refseq))(info)GCF_900631625.1

•Zalophus californianus(California sea lion (mZalCal1 alternate hap 2020))(info)GCA_009762295.2

•Zalophus californianus(California sea lion (v2 primary hap 2020))(info)GCF_009762305.2

•Zalophus californianus(California sea lion (v1 2019))(info)GCA_009762305.1

•Zalophus californianus(California sea lion (BS06 2019 Broad))(info)GCA_004024565.1

Callorhinus

Callorhinus ursinus

•Callorhinus ursinus(northern fur seal)(info)GCF_003265705.1

•Callorhinus ursinus(northern fur seal (GAN/ISIS: 27379988/994484 2025))(info)GCF_003265705.2

Eumetopias

•Eumetopias jubatus(Steller sea lion)(info)GCF_004028035.1

•Halichoerus grypus(gray seal (241Hg 2020))(info)GCF_012393455.1

•Halichoerus grypus(gray seal (hap1.1 2025))(info)GCA_964656455.1

•Halichoerus grypus(gray seal (hap2.1 2025))(info)GCA_964656465.1

•Halichoerus grypus(gray seal (mHalGry1.hap1.1 2025))(info)GCF_964656455.1

Phoca

•Phoca vitulina(harbor seal)(info)GCF_004348235.1

Monachinae

Monachini

Neomonachus

Neomonachus schauinslandi

•Neomonachus schauinslandi(Hawaiian monk seal (2021 Johns Hopkins U))(info)GCF_002201575.2

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U genbank))(info)GCA_002201575.1

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U refseq))(info)GCF_002201575.1

Miroungini

Mirounga

Mirounga angustirostris

•Mirounga angustirostris(northern elephant seal (BS05 2019 Broad))(info)GCA_004023865.1

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap1 2023 genbank))(info)GCA_029215605.1

•Mirounga angustirostris(Northern elephant seal (CCGP_5_RB_7025 hap1 2023 refseq))(info)GCF_029215605.1

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap2 2023))(info)GCA_029215635.1

•Mirounga angustirostris(northern elephant seal (v3 JK_09032017 2022))(info)GCF_021288785.2

•Mirounga angustirostris(northern elephant seal (v2 JK_09032017 2021))(info)GCF_021288785.1

•Mirounga leonina(southern elephant seal)(info)GCF_011800145.1

Lobodontini

Leptonychotes

Leptonychotes weddellii

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 refseq))(info)GCF_000349705.1

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 genbank))(info)GCA_000349705.1

Odobenidae

Odobenus

Odobenus rosmarus

•Odobenus rosmarus divergens(Pacific walrus)(info)GCF_000321225.1

•Panthera tigris(tiger)(info)GCF_018350195.1

Panthera tigris altaica

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 refseq))(info)GCF_000464555.1

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 genbank))(info)GCA_000464555.1

Panthera onca

•Panthera onca(jaguar (BS21 2019))(info)GCA_004023805.1

•Panthera onca(jaguar (hap1 2025))(info)GCA_046562885.1

•Panthera onca(jaguar (hap2 2025))(info)GCA_046562875.1

•Panthera onca(jaguar (Sample0147 2023))(info)GCF_028533385.1

Panthera pardus

•Panthera pardus(leopard (Hobbes primary hap 2022))(info)GCF_024362965.1

•Panthera pardus(leopard (Maewha 2016 refseq))(info)GCF_001857705.1

•Panthera pardus(leopard (Maewha 2016 genbank))(info)GCA_001857705.1

•Panthera leo(lion)(info)GCF_018350215.1

•Panthera uncia(snow leopard (11264 2022))(info)GCF_023721935.1

Neofelis

Neofelis nebulosa

•Neofelis nebulosa(clouded leopard (mNeoNeb1 alternate hap 2023))(info)GCA_028018655.1

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 refseq))(info)GCF_028018385.1

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 genbank))(info)GCA_028018385.1

Felinae

Felis

•Felis nigripes(black-footed cat)(info)GCA_004023925.1

Felis catus

•Felis catus(domestic cat (Abyssinian Cinnamon 2017 WashU))(info)GCF_000181335.3

•Felis catus(domestic cat (Abyssinian Cinnamon 2021 WashU))(info)GCA_000181335.5

•Felis catus(domestic cat (Abyssinian Cinnamon 2021))(info)GCA_000181335.6

•Felis catus(domestic cat (Fca126 2021 Texas A&M U))(info)GCF_018350175.1

Lynx

Lynx rufus

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022))(info)GCA_022079275.1

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022))(info)GCF_022079265.1

Lynx canadensis

•Lynx canadensis(Canada lynx (alternate hap LIC74 2019))(info)GCA_007474575.1

•Lynx canadensis(Canada lynx (LIC74 v2 alternate hap 2020))(info)GCA_007474575.2

•Lynx canadensis(Canada lynx (LIC74 v2 primary hap 2020))(info)GCF_007474595.2

•Lynx canadensis(Canada lynx (LIC74 v1 2019))(info)GCF_007474595.1

Acinonyx

Acinonyx jubatus

•Acinonyx jubatus(cheetah (Ajub_Pintada_27869175 2022))(info)GCF_027475565.1

•Acinonyx jubatus(cheetah (Rico 2018))(info)GCF_003709585.1

•Acinonyx jubatus(cheetah (AJU 981 2015))(info)GCA_001443585.1

Prionailurus

•Prionailurus viverrinus(fishing cat (Anna 2022 U Missouri))(info)GCF_022837055.1

•Prionailurus bengalensis(leopard cat)(info)GCF_016509475.1

Leopardus

•Leopardus geoffroyi(Geoffroy's cat)(info)GCF_018350155.1

Herpailurus

•Herpailurus yagouaroundi(jaguarundi)(info)GCF_014898765.1

Puma

Puma concolor

•Puma concolor(puma (L17-30 alternate hap 2023))(info)GCA_028749965.1

•Puma concolor(puma (L17-30 primary hap 2023))(info)GCA_028749985.1

•Puma concolor(puma (SC36_Marlon 2018 refseq))(info)GCF_003327715.1

•Puma concolor(puma (SC36_Marlon 2018 genbank))(info)GCA_003327715.1

Viverridae

Paradoxurinae

Paradoxurus

•Paradoxurus hermaphroditus(Asian palm civet)(info)GCA_004024585.1

Herpestidae

Mungos

•Mungos mungo(banded mongoose)(info)GCA_004023785.1

Helogale

•Helogale parvula(dwarf mongoose)(info)GCA_004023845.1

Suricata

Suricata suricatta

•Suricata suricatta(meerkat (VVHF042 2019 DNA Zoo refseq))(info)GCF_006229205.1

•Suricata suricatta(meercat (VVHF042 2019 DNA Zoo genbank))(info)GCA_006229205.1

•Suricata suricatta(meerkat (BS45 2019 Broad))(info)GCA_004023905.1

Eupleridae

Euplerinae

Cryptoprocta

•Cryptoprocta ferox(fossa)(info)GCA_004023885.1

Hyaenidae

Hyaena

Hyaena hyaena

•Hyaena hyaena(striped hyena (BS54 2019 Broad))(info)GCA_004023945.1

•Hyaena hyaena(striped hyena (Hyena2069 2018 Potsdam U))(info)GCF_003009895.1

•Vicugna pacos(alpaca (2025))(info)GCF_048564905.1

•Vicugna pacos(alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.4

•Vicugna pacos(alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.3

•Vicugna pacos huacaya(alpaca (2015 BGI))(info)GCA_000767525.1

Camelus

Camelus dromedarius

•Camelus dromedarius(Arabian camel (Drom800 2019 refseq))(info)GCF_000803125.2

•Camelus dromedarius(Arabian camel (hap2 2024))(info)GCA_036321565.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 genbank))(info)GCA_036321535.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 refseq))(info)GCF_036321535.1

•Camelus dromedarius(Arabian camel (2014 genbank))(info)GCA_000767585.1

Camelus bactrianus

•Camelus bactrianus(Bactrian camel (Alxa 2014 refseq))(info)GCF_000767855.1

•Camelus bactrianus(Bactrian camel YW-2024 2025)(info)GCF_048773025.1

•Camelus bactrianus(Bactrian camel (Alxa 2014 genbank))(info)GCA_000767855.1

Camelus ferus

•Camelus ferus(wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020))(info)GCF_009834535.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 refseq))(info)GCF_000311805.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 genbank))(info)GCA_000311805.2

•Bison bison bison(American bison (2014 refseq))(info)GCF_000754665.1

•Bison bison bison(American bison (2014 genbank))(info)GCA_000754665.1

Bos

Bos indicus x Bos taurus

•Bos indicus x Bos taurus(Angus cow (Angus x Brahman F1 Angus haplotype 2018))(info)GCA_003369685.2

•Bos indicus x Bos taurus(Brahman cow (Angus x Brahman F1 Brahman haplotype 2018))(info)GCF_003369695.1

•Bos javanicus(banteng 2023)(info)GCF_032452875.1

Bos taurus

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA))(info)GCF_002263795.3

•Bos taurus(cattle (Hereford UMD_3.1.1 2014))(info)GCF_000003055.6

•Bos taurus(domestic cattle (Tuli MAZUNGA 2024))(info)GCA_040285425.1

•Bos taurus(domestic cattle (Wagyu 3DWFS0412 2024))(info)GCA_040286185.1

•Bos taurus(cattle (Hereford 2015))(info)GCA_000003205.6

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA))(info)GCF_002263795.1

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA))(info)GCF_002263795.2

•Bos grunniens(domestic yak (maiwa yakHY00 2019))(info)GCA_005887515.3

•Bos gaurus(gaur (Gaur_Henry_Doorly_Zoo_5443 2020))(info)GCA_014182915.2

Bos frontalis

•Bos frontalis(gayal (CVASU_BF_001 2021))(info)GCA_017311355.1

•Bos frontalis(gayal (Nagaland 2019))(info)GCA_007844835.1

Bos mutus

•Bos mutus(wild yak (GX-2022 2023))(info)GCF_027580195.1

•Bos mutus(wild yak (yakQH1 2013))(info)GCF_000298355.1

Bos indicus

•Bos indicus(zebu cattle (Hainan HN024 2024))(info)GCA_039881165.1

•Bos indicus(zebu cattle (Nelore 2014 refseq))(info)GCF_000247795.1

•Bos indicus(zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023))(info)GCF_029378745.1

•Bos indicus(zebu cattle (Nelore 2014 genbank))(info)GCA_000247795.2

Bubalus

•Bubalus kerabau(carabao (swamp buffalo K-KA32 2023))(info)GCF_029407905.1

Bubalus bubalis

•Bubalus bubalis(water buffalo (Mediterranean 2018))(info)GCF_003121395.1

•Bubalus bubalis(water buffalo (Murrah 2021))(info)GCF_019923935.1

•Bubalus bubalis(water buffalo (Mediterranean 2013))(info)GCA_000471725.1

Caprinae

Ammotragus

•Ammotragus lervia(aoudad)(info)GCA_002201775.1

Ovis

•Ovis orientalis(Asiatic mouflon (Amuf_v1 2020))(info)GCA_014523465.1

Ovis canadensis

•Ovis canadensis(bighorn sheep (BS48 2019))(info)GCA_004026945.1

•Ovis canadensis(bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.2

•Ovis canadensis(bighorn sheep (v1 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.1

Ovis aries

•Ovis aries(Rambouillet sheep (Baylor 2017))(info)GCF_002742125.1

•Ovis aries(Rambouillet sheep (U.Idaho 2021))(info)GCF_016772045.1

•Ovis aries(sheep (hu hu3095 2024))(info)GCA_040805955.1

•Ovis aries(sheep (OAR_USU_Benz2616 2023))(info)GCF_016772045.2

•Ovis aries(sheep (Texel 2015))(info)GCA_000298735.2

Capra

Capra hircus

•Capra hircus(goat (v2 San Clemente 2016 USDA))(info)GCF_001704415.2

•Capra hircus(Inner Mongolia cashmere goat (2024))(info)GCA_041735815.1

•Capra hircus(Saanen dairy goat)(info)GCA_015443085.1

•Capra hircus(goat (v1 San Clemente 2016 USDA genbank))(info)GCA_001704415.1

•Capra hircus(goat (v1 San Clemente 2016 USDA refseq))(info)GCF_001704415.1

•Capra aegagrus(wild goat)(info)GCA_000978405.1

Nilgiritragus

•Nilgiritragus hylocrius(Nilgiri tahr)(info)GCA_004026825.1

Capricornis

•Capricornis sumatraensis(Sumatran serow (serow.1 2024))(info)GCF_032405125.1

Budorcas

•Budorcas taxicolor(takin (Tak-1 2022))(info)GCF_023091745.1

Antilopinae

Pantholops

•Pantholops hodgsonii(chiru)(info)GCA_000400835.1

Saiga

•Saiga tatarica(saiga antelope)(info)GCA_004024985.1

Alcelaphinae

Beatragus

•Beatragus hunteri(hirola (BS46 2019 Broad))(info)GCA_004027495.1

Hippotraginae

Oryx

•Oryx dammah(scimitar-horned oryx)(info)GCF_014754425.2

•Rangifer tarandus(reindeer (2023))(info)GCA_963422255.1

•Rangifer tarandus(reindeer (US061 2019))(info)GCA_004026565.1

•Rangifer tarandus caribou(boreal woodland reindeer (boreal CA-31 2023))(info)GCA_019903745.2

Alces

Alces alces

•Alces alces(moose/elk (2024))(info)GCA_964270355.1

•Alces alces(moose/elk (AALL_1980 2023))(info)GCA_015832495.2

•Alces alces(moose/elk (MIG12-28694850 2019))(info)GCA_007570765.1

Capreolus

•Capreolus capreolus(western roe deer (2023))(info)GCA_951849835.1

Odocoileus

Odocoileus virginianus

•Odocoileus virginianus(white-tailed deer (Illinois 20LAN1187 2024))(info)GCF_023699985.2

Odocoileus virginianus texanus

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 refseq))(info)GCF_002102435.1

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 genbank))(info)GCA_002102435.1

Cervinae

Cervus

•Cervus canadensis(elk (wapiti))(info)GCF_019320065.1

Cervus elaphus

•Cervus elaphus(red deer (2021))(info)GCF_910594005.1

•Cervus elaphus(red deer (alternate hap 2021))(info)GCA_910593805.1

•Cervus nippon(sika deer (Changchun, China MLH-2022 2023))(info)GCA_034195675.1

Dama

Dama dama

•Dama dama(fallow deer (Ldn47 2023))(info)GCF_033118175.1

•Dama dama(fallow deer (maternal hap SK-2024 2025))(info)GCA_048126745.1

•Dama dama(fallow deer (paternal hap SK-2024 2025))(info)GCA_048127045.1

Elaphurus

•Elaphurus davidianus(Pere David's deer)(info)GCA_002443075.1

Muntiacinae

Muntiacus

Muntiacus reevesi

•Muntiacus reevesi(Reeves' muntjac (alternate hap 2024))(info)GCA_963930665.1

•Muntiacus reevesi(Reeves' muntjac (primary hap 2024))(info)GCF_963930625.1

Moschidae

Moschus

•Moschus berezovskii(Chinese forest musk deer (Sichuan 2022))(info)GCF_022376915.1

•Moschus moschiferus(Siberian musk deer (BS20 2019 Broad))(info)GCA_004024705.1

Giraffidae

Giraffa

•Giraffa tippelskirchi(Masai giraffe (MA1 2016 Penn St))(info)GCA_001651235.1

Okapia

•Okapia johnstoni(okapi)(info)GCA_001660835.1

Antilocapridae

Antilocapra

Antilocapra americana

•Antilocapra americana(pronghorn (PH2016 2021))(info)GCA_021018645.1

•Antilocapra americana(pronghorn (BS35 2019 Broad))(info)GCA_004027515.1

Tragulina

Tragulidae

Tragulus

•Tragulus javanicus(Java mouse-deer (US108 2019 Broad))(info)GCA_004024965.1

•Balaenoptera bonaerensis(Antarctic minke whale)(info)GCA_000978805.1

Balaenoptera musculus

•Balaenoptera musculus(blue whale (alternate hap JJ_BM4_2016_0621 2019))(info)GCA_008658375.1

•Balaenoptera musculus(Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020))(info)GCA_008658375.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v3 primary hap 2020))(info)GCF_009873245.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v2 2020))(info)GCA_009873245.2

Balaenoptera physalus

•Balaenoptera physalus(fin whale (hap1.1 2025))(info)GCA_965194825.1

•Balaenoptera physalus(fin whale (hap2.1 2025))(info)GCA_965194765.1

Balaenoptera acutorostrata

•Balaenoptera acutorostrata(minke whale (alternate hap 2023))(info)GCA_950005055.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 refseq))(info)GCF_949987535.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 genbank))(info)GCA_949987535.1

Balaenoptera acutorostrata scammoni

•Balaenoptera acutorostrata scammoni(minke whale (2013 refseq))(info)GCF_000493695.1

•Balaenoptera acutorostrata scammoni(minke whale (2013 genbank))(info)GCA_000493695.1

Balaenoptera ricei

•Balaenoptera ricei(Rice's whale (hap1 2023))(info)GCA_028017805.1

•Balaenoptera ricei(Rice's whale (hap2 2023 refseq))(info)GCF_028023285.1

•Balaenoptera ricei(Rice's whale (hap2 2023 genbank))(info)GCA_028023285.1

Balaenoptera borealis

•Balaenoptera borealis(sei whale (hap1.1 2025))(info)GCA_965194805.1

•Balaenoptera borealis(sei whale (hap2.1 2025))(info)GCA_965194725.1

Megaptera

•Megaptera novaeangliae(humpback whale (KW2013002 2024))(info)GCA_041834305.1

Eschrichtiidae

Eschrichtius

Eschrichtius robustus

•Eschrichtius robustus(grey whale)(info)GCA_004363415.1

•Eschrichtius robustus(grey whale (mEscRob2 alternate hap 2023))(info)GCA_028021475.1

•Eschrichtius robustus(grey whale (primary hap 2023 genbank))(info)GCA_028021215.1

•Eschrichtius robustus(grey whale (primary hap 2023 refseq))(info)GCF_028021215.1

Balaenidae

Eubalaena

Eubalaena glacialis

•Eubalaena glacialis(North Atlantic right whale (hap1 2023))(info)GCA_028571275.1

•Eubalaena glacialis(North Atlantic right whale (hap2 + XY 2023 refseq))(info)GCF_028564815.1

•Eubalaena glacialis(North Atlantic right whale (hap2 2023 genbank))(info)GCA_028564815.1

•Eubalaena japonica(North Pacific right whale)(info)GCA_004363455.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024))(info)GCA_964270905.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024))(info)GCA_964270935.1

Tursiops

Tursiops truncatus

•Tursiops truncatus(common bottlenose dolphin (maternal 2020))(info)GCA_011762535.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y refseq 2020))(info)GCF_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 refseq))(info)GCF_001922835.1

•Tursiops truncatus(common bottlenose dolphin (mTurTru1 2024))(info)GCF_011762595.2

•Tursiops truncatus(common bottlenose dolphin (paternal 2020))(info)GCA_011762515.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y genbank 2020))(info)GCA_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 genbank))(info)GCA_001922835.1

Pseudorca

Pseudorca crassidens

•Pseudorca crassidens(false killer whale (hap1 2024 genbank))(info)GCA_039906515.1

•Pseudorca crassidens(false killer whale (hap1 2024 refseq))(info)GCF_039906515.1

•Pseudorca crassidens(false killer whale (hap2 2024))(info)GCA_039906525.1

Orcinus

Orcinus orca

•Orcinus orca(killer whale (2022))(info)GCF_937001465.1

•Orcinus orca(killer whale (alternate hap 2022))(info)GCA_937001455.1

•Orcinus orca(killer whale (Morgan 2013))(info)GCF_000331955.2

Globicephala

Globicephala melas

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 refseq))(info)GCF_963455315.2

•Globicephala melas(long-finned pilot whale (X-22926-18 2019))(info)GCF_006547405.1

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 genbank))(info)GCA_963455315.2

•Globicephala melas(long-finned pilot whale (v1 primary hap 2023))(info)GCF_963455315.1

Sagmatias

•Sagmatias obliquidens(Pacific white-sided dolphin)(info)GCF_003676395.1

Grampus

Grampus griseus

•Grampus griseus(Risso's dolphin (hap1.1 2024))(info)GCA_964374135.1

•Grampus griseus(Risso's dolphin (hap2.1 2024))(info)GCA_964374185.1

Delphinus

Delphinus delphis

•Delphinus delphis(saddleback dolphin (alternate hap 2023))(info)GCA_949987525.1

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 refseq))(info)GCF_949987515.1

•Delphinus delphis(saddleback dolphin (v2 primary hap 2024 refseq))(info)GCF_949987515.2

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 genbank))(info)GCA_949987515.1

Stenella

Stenella coeruleoalba

•Stenella coeruleoalba(striped dolphin (alternate hap 2023))(info)GCA_951394445.1

•Stenella coeruleoalba(striped dolphin (primary hap 2023))(info)GCA_951394435.1

Lagenorhynchus

Lagenorhynchus albirostris

•Lagenorhynchus albirostris(white-beaked dolphin (alternate hap 2023))(info)GCA_949774935.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 refseq))(info)GCF_949774975.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 genbank))(info)GCA_949774975.1

Monodontidae

Delphinapterus

Delphinapterus leucas

•Delphinapterus leucas(beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020))(info)GCA_009917745.1

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v3 2019))(info)GCF_002288925.2

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v2 2017))(info)GCA_002288925.2

Monodon

Monodon monoceros

•Monodon monoceros(narwhal (Baffin Bay 2019))(info)GCF_005190385.1

•Monodon monoceros(narwhal (Baffin Bay Population NGI 2022))(info)GCA_005190385.3

•Monodon monoceros(narwhal (BS41 2019 Broad))(info)GCA_004026685.1

Ziphiidae

Mesoplodon

Mesoplodon densirostris

•Mesoplodon densirostris(Blainville's beaked whale (alternate hap 2022))(info)GCA_025094165.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 refseq))(info)GCF_025265405.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 genbank))(info)GCA_025265405.1

Mesoplodon bidens

•Mesoplodon bidens(Sowerby's beaked whale (hap1 2024))(info)GCA_964165515.1

•Mesoplodon bidens(Sowerby's beaked whale (hap2 2024))(info)GCA_964148845.1

•Mesoplodon bidens(Sowerby's beaked whale (US080 2019))(info)GCA_004027085.1

Mesoplodon mirus

•Mesoplodon mirus(True's beaked whale (hap1.1 2024))(info)GCA_964341445.1

•Mesoplodon mirus(True's beaked whale (hap2.1 2024))(info)GCA_964341485.1

Ziphius

•Ziphius cavirostris(Cuvier's beaked whale)(info)GCA_004364475.1

Hyperoodon

Hyperoodon ampullatus

•Hyperoodon ampullatus(northern bottlenose whale (alternate hap 2023))(info)GCA_949752845.1

•Hyperoodon ampullatus(northern bottlenose whale (primary hap 2023))(info)GCA_949752795.1

Iniidae

Inia

Inia geoffrensis

•Inia geoffrensis(boutu (hap1 2024))(info)GCA_036417435.1

•Inia geoffrensis(boutu (hap2 2024))(info)GCA_036417475.1

•Inia geoffrensis(boutu (BS63 2019))(info)GCA_004363515.1

Phocoenidae

Phocoena

Phocoena phocoena

•Phocoena phocoena(harbor porpoise (primary hap 2024 genbank))(info)GCA_963924675.1

•Phocoena phocoena(harbor porpoise (primary hap 2024 refseq))(info)GCF_963924675.1

•Phocoena phocoena(harbor porpoise (BS71 2019))(info)GCA_004363495.1

Phocoena sinus

•Phocoena sinus(vaquita (alternate hap mPhoSin1 2019))(info)GCA_008692045.1

•Phocoena sinus(vaquita (mPhoSin1 2019))(info)GCF_008692025.1

Neophocaena

Neophocaena asiaeorientalis

Neophocaena asiaeorientalis asiaeorientalis

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v2 wild 2018 refseq))(info)GCF_003031525.2

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 2018 refseq))(info)GCF_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 wild 2018 genbank))(info)GCA_003031525.1

Platanistidae

Platanista

•Platanista minor(Indus River dolphin)(info)GCA_004363435.1

Physeteridae

Kogia

Kogia breviceps

•Kogia breviceps(pygmy sperm whale)(info)GCA_004363705.1

•Kogia breviceps(pygmy sperm whale (haplotype 1 2022 refseq))(info)GCF_026419965.1

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 2 2022))(info)GCA_026419985.1

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank))(info)GCA_026419965.1

Physeter

Physeter macrocephalus

•Physeter macrocephalus(sperm whale (SW-GA 2023))(info)GCF_002837175.3

•Physeter macrocephalus(sperm whale (SW-GA 2019))(info)GCF_002837175.2

Lipotidae

Lipotes

Lipotes vexillifer

•Lipotes vexillifer(Yangtze River dolphin (v1.1 BGI 2013 refseq))(info)GCF_000442215.2

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 genbank))(info)GCA_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 refseq))(info)GCF_000442215.1

Ancodonta

Hippopotamidae

Hippopotamus

Hippopotamus amphibius

•Hippopotamus amphibius(hippopotamus (BS01 2019 Broad))(info)GCA_004027065.1

•Hippopotamus amphibius(hippopotamus (HIP001 2018))(info)GCA_002995585.1

Hippopotamus amphibius kiboko

•Hippopotamus amphibius kiboko(hippopotamus (mHipAmp2 hap1 2023))(info)GCA_030028035.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 refseq))(info)GCF_030028045.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 genbank))(info)GCA_030028045.1

•Catagonus wagneri(Chacoan peccary (BS20 v2 2019 Broad))(info)GCA_004024745.2

•Catagonus wagneri(Chacoan peccary (BS18 v1 2019 Broad))(info)GCA_004024745.1

Suidae

Phacochoerus

•Phacochoerus africanus(common warthog (WHEZ1 2021))(info)GCF_016906955.1

Sus

Sus scrofa

•Sus scrofa(pig (Bamei 2023))(info)GCA_030704935.1

•Sus scrofa(pig (Duroc 2017))(info)GCF_000003025.6

•Sus scrofa(pig (Norwegian landrace 2024))(info)GCA_963921485.1

•Sus scrofa(pig (USMARCv1 2017))(info)GCA_002844635.1

•Sus scrofa(pig (Wuzhishan WZS1 2025))(info)GCA_048338725.1

•Molossus alvarezi(Alvarez's mastiff bat (A012 2023))(info)GCA_031001765.1

•Molossus alvarezi(Alvarez's mastiff bat (hap1 2024))(info)GCA_037157525.1

•Molossus alvarezi(Alvarez's mastiff bat (hap2 2024))(info)GCA_037176705.1

Molossus nigricans

•Molossus nigricans(northern black mastiff bat (mMolNig1 2022))(info)GCA_026936385.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap1 2024))(info)GCA_039880945.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap2 2024))(info)GCA_039880925.1

•Molossus molossus(Pallas's mastiff bat)(info)GCF_014108415.1

Mops

•Mops condylurus(Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024))(info)GCA_043748645.1

Tadarida

Tadarida brasiliensis

•Tadarida brasiliensis(Brazilian free-tailed bat (primary hap 2023))(info)GCA_030848825.1

•Tadarida brasiliensis(Brazilian free-tailed bat (US034 2019))(info)GCA_004025005.1

Mormoopidae

Mormoops

•Mormoops blainvillei(Antillean ghost-faced bat)(info)GCA_004026545.1

Pteronotus

•Pteronotus parnellii(Parnell's mustached bat (2013))(info)GCA_000465405.1

•Pteronotus mesoamericanus(Parnell's mustached bat (Mesoamerican 2021))(info)GCF_021234165.1

•Artibeus intermedius(bat A.intermedius (hap2 2024))(info)GCA_038363225.1

•Artibeus intermedius(great fruit-eating bat (hap1 2024))(info)GCA_038363145.1

Artibeus lituratus

•Artibeus lituratus(great fruit-eating bat (mArtLit1hap2 2024))(info)GCA_038363175.2

•Artibeus lituratus(great fruit-eating bat (v2 hap1 2024))(info)GCA_038363095.2

•Artibeus lituratus(great fruit-eating bat (v1 hap1 2024))(info)GCA_038363095.1

Artibeus jamaicensis

•Artibeus jamaicensis(Jamaican fruit-eating bat (1a 2020 Wuhan U))(info)GCF_014825515.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (2021))(info)GCF_021234435.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (US092 2019 Broad))(info)GCA_004027435.1

Sturnira

Sturnira hondurensis

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.1 Veracruz 20B 2020))(info)GCF_014824575.3

•Sturnira hondurensis(neotropical fruit bat)(info)GCF_014824575.2

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020))(info)GCF_014824575.1

Desmodontinae

Desmodus

Desmodus rotundus

•Desmodus rotundus(common vampire bat (v2 HL8 alternate hap 2022 genbank))(info)GCA_022682395.2

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 refseq))(info)GCF_022682495.2

•Desmodus rotundus(common vampire bat (v3 DRU21DN04 2018))(info)GCF_002940915.2

•Desmodus rotundus(common vampire bat (v1 HL8 alternate hap 2022 genbank))(info)GCA_022682395.1

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 genbank))(info)GCA_022682495.1

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 genbank))(info)GCA_022682495.2

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 refseq))(info)GCF_022682495.1

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 genbank))(info)GCA_002940915.2

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 refseq))(info)GCF_002940915.1

Phyllostominae

Phyllostomus

•Phyllostomus hastatus(greater spear-nosed bat (2021 Texas Tech U))(info)GCF_019186645.2

Phyllostomus discolor

•Phyllostomus discolor(pale spear-nosed bat (alternate hap MPI-MPIP 2019))(info)GCA_004115245.1

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020))(info)GCA_004115245.2

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020))(info)GCF_004126475.2

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v1 2019))(info)GCF_004126475.1

Micronycteris

•Micronycteris hirsuta(hairy big-eared bat (US037 2019 Broad))(info)GCA_004026765.1

Tonatia

•Tonatia bakeri(stripe-headed round-eared bat)(info)GCA_004024845.1

Glossophaginae

Glossophaga

Glossophaga mutica

•Glossophaga mutica(Merriam's long-tongued bat (hap1 2024))(info)GCA_039655065.1

•Glossophaga mutica(Merriam's long-tongued bat (hap2 2024))(info)GCA_039656995.1

Anoura

•Anoura caudifer(tailed tailless bat)(info)GCA_004027475.1

Carolliinae

Carollia

•Carollia perspicillata(Seba's short-tailed bat)(info)GCA_004027735.1

Vespertilionidae

Eptesicus

Eptesicus fuscus

•Eptesicus fuscus(big brown bat (BU_THK_EF1 2012))(info)GCF_000308155.1

•Eptesicus fuscus(big brown bat (TK198812 2023))(info)GCF_027574615.1

Myotis

•Myotis brandtii(Brandt's bat)(info)GCF_000412655.1

Myotis daubentonii

•Myotis daubentonii(Daubenton's bat (alternate hap 2023))(info)GCA_963242275.1

•Myotis daubentonii(Daubenton's bat (primary hap 2023 refseq))(info)GCF_963259705.1

•Myotis daubentonii(Daubenton's bat (primary hap 2023 genbank))(info)GCA_963259705.1

•Myotis davidii(David's myotis bat)(info)GCF_000327345.1

Myotis emarginatus

•Myotis emarginatus(Geoffroy's bat (hap1.1 2025))(info)GCA_965115925.1

•Myotis emarginatus(Geoffroy's bat (hap2.1 2025))(info)GCA_965115945.1

Myotis myotis

•Myotis myotis(greater mouse-eared bat (2020 Bat1K))(info)GCF_014108235.1

•Myotis myotis(greater mouse-eared bat (2019 Broad))(info)GCA_004026985.1

•Myotis lucifugus(little brown bat)(info)GCF_000147115.1

Myotis nattereri

•Myotis nattereri(Natterer's bat (hap1.2 2025))(info)GCA_964212035.2

•Myotis nattereri(Natterer's bat (hap2.2 2025))(info)GCA_964212025.2

•Myotis nattereri(Natterer's bat (hap2.1 2024))(info)GCA_964212025.1

•Myotis nattereri(Natterer's bat (hap1.1 2024))(info)GCA_964212035.1

•Myotis pilosus(Rickett's big-footed myotis (AB-2021 2024))(info)GCA_036010255.1

Myotis mystacinus

•Myotis mystacinus(whiskered bat (hap1 2024))(info)GCA_964094495.2

•Myotis mystacinus(whiskered bat (hap2 2024))(info)GCA_964195625.1

Myotis yumanensis

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023))(info)GCA_028536395.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 refseq))(info)GCF_028538775.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023))(info)GCA_028538775.1

Plecotus

•Plecotus auritus(brown big-eared bat (primary hap 2023))(info)GCA_963455305.1

Pipistrellus

Pipistrellus pipistrellus

•Pipistrellus pipistrellus(common pipistrelle (2020))(info)GCA_903992545.1

•Pipistrellus pipistrellus(common pipistrelle (alternate hap 2020))(info)GCA_903992515.1

•Pipistrellus pipistrellus(common pipistrelle (Broad 2019))(info)GCA_004026625.1

•Pipistrellus pipistrellus(common pipistrelle (hap1.1 2025))(info)GCA_965203405.1

•Pipistrellus pipistrellus(common pipistrelle (hap2.1 2025))(info)GCA_965204225.1

•Pipistrellus hanaki(Hanaki's dwarf bat (2024))(info)GCA_964339955.1

•Pipistrellus kuhlii(Kuhl's pipistrelle (2020))(info)GCF_014108245.1

Pipistrellus nathusii

•Pipistrellus nathusii(Nathusius's pipistrelle (hap1.1 2025))(info)GCA_964656225.1

•Pipistrellus nathusii(Nathusius's pipistrelle (hap2.1 2025))(info)GCA_964656075.1

•Pipistrellus nathusii(Nathusius's pipistrelle (primary hap 2024))(info)GCA_963693515.1

Pipistrellus pygmaeus

•Pipistrellus pygmaeus(soprano pipistrelle (alternate hap 2023))(info)GCA_949987765.1

•Pipistrellus pygmaeus(soprano pipistrelle (primary hap 2023))(info)GCA_949987585.1

Nyctalus

Nyctalus leisleri

•Nyctalus leisleri(lesser noctule (v2 hap1 2025))(info)GCA_964264875.2

•Nyctalus leisleri(lesser noctule (v2 hap2 2025))(info)GCA_964264895.2

•Nyctalus leisleri(lesser noctule (v1 hap1 2024))(info)GCA_964264875.1

•Nyctalus leisleri(lesser noctule (v1 hap2 2024))(info)GCA_964264895.1

Murina

•Murina feae(little tube-nosed bat)(info)GCA_004026665.1

Cnephaeus

Cnephaeus nilssonii

•Cnephaeus nilssonii(northern bat (alternate hap 2023))(info)GCA_951640545.1

•Cnephaeus nilssonii(northern bat (primary hap 2023))(info)GCA_951640355.1

Antrozous

•Antrozous pallidus(pallid bat (TK200870 primary hap 2023))(info)GCA_027563665.1

Vespertilio

•Vespertilio murinus(particolored bat (primary hap 2024))(info)GCA_963924515.1

Lasiurus

•Lasiurus borealis(red bat)(info)GCA_004026805.1

Corynorhinus

Corynorhinus townsendii

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230055.1

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230045.1

Noctilionidae

Noctilio

•Noctilio leporinus(greater bulldog bat)(info)GCA_004026585.1

Emballonuridae

Emballonurinae

Saccopteryx

Saccopteryx bilineata

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 refseq))(info)GCF_036850765.1

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 genbank))(info)GCA_036850765.1

Saccopteryx leptura

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 refseq))(info)GCF_036850995.1

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 genbank))(info)GCA_036850995.1

Rhynchonycteris

Rhynchonycteris naso

•Rhynchonycteris naso(proboscis bat (hap1 2024))(info)GCA_037038545.1

•Rhynchonycteris naso(proboscis bat (hap2 2024))(info)GCA_037038555.1

Miniopteridae

Miniopterus

•Miniopterus natalensis(Natal long-fingered bat)(info)GCF_001595765.1

Miniopterus schreibersii

•Miniopterus schreibersii(Schreibers' long-fingered bat (US075 2019))(info)GCA_004026525.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap1 2025))(info)GCA_964146895.2

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap2 2025))(info)GCA_964145185.2

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap2 2024))(info)GCA_964145185.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap1 2024))(info)GCA_964146895.1

Hipposideros larvatus sensu lato

Hipposideros larvatus

•Hipposideros larvatus(bat H.larvatus (China 20210929_DDb primary hap 2024))(info)GCA_043727955.1

•Hipposideros larvatus(intermediate roundleaf bat (primary hap 2023))(info)GCA_031876335.1

•Hipposideros galeritus(Cantor's roundleaf bat)(info)GCA_004027415.1

Hipposideros armiger

•Hipposideros armiger(great roundleaf bat (v2 ML-2016 2016))(info)GCF_001890085.2

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 genbank))(info)GCA_001890085.1

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 refseq))(info)GCF_001890085.1

Doryrhina

•Doryrhina cyclops(cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024))(info)GCA_043880285.1

Aselliscus

•Aselliscus stoliczkanus(Stoliczka's trident bat (China 2021113_DDA primary hap 2024))(info)GCA_043727835.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat)(info)GCA_001888835.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCA_036562045.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCF_036562045.2

Rhinolophus ferrumequinum

•Rhinolophus ferrumequinum(greater horseshoe bat (MPI-CBG alternate hap 2019))(info)GCA_004115295.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v2 MPI-CBG 2019))(info)GCF_004115265.2

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 genbank))(info)GCA_004115265.2

•Rhinolophus ferrumequinum(greater horseshoe bat (mRhiFer1 2020))(info)GCA_014108255.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 refseq))(info)GCF_004115265.1

•Rhinolophus affinis(intermediate horseshoe bat (China 20211001_DDa primary hap 2024))(info)GCA_043728065.1

Rhinolophus hipposideros

•Rhinolophus hipposideros(lesser horseshoe bat (hap1 2024))(info)GCA_964194185.1

•Rhinolophus hipposideros(lesser horseshoe bat (hap2 2024))(info)GCA_964194215.1

Rhinolophus perniger

•Rhinolophus perniger lanosus(northern woolly horseshoe bat (20210929_DDc primary hap 2024))(info)GCA_043748575.1

•Rhinolophus trifoliatus(trefoil horseshoe bat (Malaysia primary hap 2024))(info)GCA_043728145.1

•Rhinolophus yonghoiseni(Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024))(info)GCA_043880425.1

Rhinopomatidae

Rhinopoma

•Rhinopoma microphyllum(greater mouse-tailed bat (20210906_DDa primary hap 2024))(info)GCA_043880545.1

Craseonycteridae

Craseonycteris

•Craseonycteris thonglongyai(hog-nosed bat)(info)GCA_004027555.1

Megadermatidae

Lyroderma

•Lyroderma lyra(Indian false vampire)(info)GCA_004026885.1

Megaderma

•Megaderma spasma(lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024))(info)GCA_043880595.1

•Pteropus alecto(black flying fox)(info)GCF_000325575.1

Pteropus vampyrus

•Pteropus vampyrus(Indian flying fox)(info)GCF_902729225.1

•Pteropus vampyrus(large flying fox)(info)GCF_000151845.1

Eidolon

•Eidolon helvum(straw-colored fruit bat)(info)GCA_000465285.1

Rousettinae

Rousettus

Rousettus aegyptiacus

•Rousettus aegyptiacus(Egyptian rousette (1219 2016 Boston U))(info)GCF_001466805.2

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 refseq))(info)GCF_014176215.1

•Rousettus aegyptiacus(Egyptian rousette (US006 2019 Broad))(info)GCA_004024865.1

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 genbank))(info)GCA_014176215.1

•Rousettus leschenaultii(Leschenault's rousette (2020))(info)GCA_015472975.1

Cynopterinae

Cynopterus

•Cynopterus sphinx(Indian short-nosed fruit bat (CYSPWHU 2023))(info)GCA_030015415.1

Macroglossinae

Macroglossus

•Macroglossus sobrinus(long-tongued fruit bat (US102 2019 Broad))(info)GCA_004027375.1

•Tapirus indicus(Asiatic tapir (hap1 2023))(info)GCA_031878655.1

•Tapirus indicus(Asiatic tapir (hap2 2023))(info)GCA_031878705.1

•Tapirus indicus(Asiatic tapir (BS100 BIUU 2019))(info)GCA_004024905.1

•Tapirus terrestris(Brazilian tapir)(info)GCA_004025025.1

Equidae

Equus

Equus asinus

•Equus asinus(ass (Dezhou 2021))(info)GCF_016077325.2

•Equus asinus(ass (Donkey D_3611 2024))(info)GCF_041296235.1

•Equus asinus(ass (Maral har 2015 refseq))(info)GCF_001305755.1

•Equus asinus(ass (Maral har 2015 genbank))(info)GCA_001305755.1

Equus caballus

•Equus caballus(horse (maternal 2024))(info)GCA_036418255.1

•Equus caballus(horse (paternal hap 2024))(info)GCA_036426135.1

•Equus caballus(horse (thoroughbred H_3958 2024))(info)GCF_041296265.1

•Equus caballus(horse (Twilight 2018))(info)GCF_002863925.1

•Equus caballus(horse (Twilight 2007 genbank))(info)GCA_000002305.1

•Equus quagga(plains zebra (Etosha38 2022 UCLA))(info)GCF_021613505.1

Equus przewalskii

•Equus przewalskii(Przewalski's horse (Burgud 2014 refseq))(info)GCF_000696695.1

•Equus przewalskii(Przewalski's horse (Varuska primary hap 2024))(info)GCF_037783145.1

•Equus przewalskii(Przewalski's horse (Burgud 2014 genbank))(info)GCA_000696695.1

Rhinocerotidae

Diceros

Diceros bicornis

•Diceros bicornis(black rhinoceros (BS38 2019 Broad))(info)GCA_004027315.1

Diceros bicornis minor

•Diceros bicornis minor(black rhinoceros (alternate hap 2021))(info)GCA_020826835.1

•Diceros bicornis minor(black rhinoceros (primary hap 2021 refseq))(info)GCF_020826845.1

•Diceros bicornis minor(black rhinoceros (primary hap 2021 genbank))(info)GCA_020826845.1

Ceratotherium

Ceratotherium simum

•Ceratotherium simum cottoni(northern white rhinoceros)(info)GCA_004027795.1

Ceratotherium simum simum

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 refseq))(info)GCF_000283155.1

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 genbank))(info)GCA_000283155.1

Dicerorhinus

Dicerorhinus sumatrensis

•Dicerorhinus sumatrensis sumatrensis(Sumatran rhinoceros (Ipuh 2017))(info)GCA_002844835.1

•Manis pentadactyla(Chinese pangolin (2020 Yunnan U))(info)GCF_014570555.1

•Manis pentadactyla(Chinese pangolin (hap1 2023))(info)GCF_030020395.1

•Manis pentadactyla(Chinese pangolin (hap2 mManPen7 2023))(info)GCA_030020945.1

•Manis pentadactyla(Chinese pangolin (MPE899 2014 WashU))(info)GCA_000738955.1

Manis javanica

•Manis javanica(Malayan pangolin (MJ-LG 2024))(info)GCF_040802235.1

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 refseq))(info)GCF_001685135.1

•Manis javanica(Malayan pangolin YNU ManJav 2.0)(info)GCF_014570535.1

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 genbank))(info)GCA_001685135.1

Eulipotyphla

Talpidae

Scalopus

•Scalopus aquaticus(eastern mole)(info)GCA_004024925.1

Talpa

Talpa europaea

•Talpa europaea(European mole (hap1 2024))(info)GCA_964194135.1

•Talpa europaea(European mole (hap2 2024))(info)GCA_964194205.1

Talpa occidentalis

•Talpa occidentalis(Iberian mole (v2.1 TD23 2020))(info)GCF_014898055.3

•Talpa occidentalis(Iberian mole (v1 TD23 2020))(info)GCF_014898055.1

•Talpa occidentalis(Iberian mole (v2 TD23 2020))(info)GCF_014898055.2

Uropsilus

•Uropsilus gracilis(gracile shrew mole)(info)GCA_004024945.1

Galemys

•Galemys pyrenaicus(Pyrenean desman (IBE-C5619 2021))(info)GCA_019455555.1

Condylura

•Condylura cristata(star-nosed mole)(info)GCF_000260355.1

•Sorex araneus(European shrew (alternate hap 2023))(info)GCA_027595995.1

•Sorex araneus(European shrew (GB8-d 2012))(info)GCF_000181275.1

•Sorex araneus(European shrew (primary hap 2023))(info)GCF_027595985.1

•Sorex fumeus(smoky shrew (2023))(info)GCF_029834395.1

Crocidurinae

Crocidura

•Crocidura indochinensis(Indochinese shrew (US011 2019 Broad))(info)GCA_004027635.1

Suncus

Suncus etruscus

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 alternate hap 2022))(info)GCA_024140225.1

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 primary hap 2022))(info)GCF_024139225.1

Solenodontidae

Solenodon

•Solenodon paradoxus(Hispaniolan solenodon)(info)GCA_004363575.1

•Erinaceus europaeus(western European hedgehog (2012 refseq))(info)GCF_000296755.1

•Erinaceus europaeus(western European hedgehog (alternate hap 2023))(info)GCA_950295305.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 refseq))(info)GCF_950295315.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 genbank))(info)GCA_950295315.1

•Erinaceus europaeus(western European hedgehog (2012 genbank))(info)GCA_000296755.1

•Bradypus variegatus(brown-throated sloth)(info)GCA_004027775.1

Megalonychidae

Choloepus

•Choloepus hoffmanni(Hoffmann's two-fingered sloth)(info)GCA_000164785.2

Choloepus didactylus

•Choloepus didactylus(southern two-toed sloth (mChoDid1 alternate hap 2020))(info)GCA_015220265.1

•Choloepus didactylus(southern two-toed sloth (mChoDid1 primary hap 2020))(info)GCF_015220235.1

•Choloepus didactylus(southern two-toed sloth (US054 2019 Broad))(info)GCA_004027855.1

Vermilingua

Myrmecophagidae

Myrmecophaga

•Myrmecophaga tridactyla(giant anteater)(info)GCA_004026745.1

Tamandua

Tamandua tetradactyla

•Tamandua tetradactyla(southern tamandua (mTamTet1 alternate hap 2022))(info)GCA_023853755.1

•Tamandua tetradactyla(southern tamandua (mTamTet1 primary hap 2022))(info)GCA_023851605.1

•Tamandua tetradactyla(southern tamandua (mTamTet1 primary hap 2022))(info)GCF_023851605.1

•Tamandua tetradactyla(southern tamandua (Broad 2019))(info)GCA_004025105.1

•Dasypus novemcinctus(nine-banded armadillo (v2 hap1 2023))(info)GCA_030445055.2

•Dasypus novemcinctus(nine-banded armadillo (v2 hap2 2023))(info)GCF_030445035.2

•Dasypus novemcinctus(nine-banded armadillo (v3.2 3-136 2012 Baylor))(info)GCF_000208655.3

•Dasypus novemcinctus(nine-banded armadillo (v1 hap1 2023))(info)GCA_030445055.1

•Dasypus novemcinctus(nine-banded armadillo (v1 hap2 2023))(info)GCF_030445035.1

•Dasypus novemcinctus(nine-banded armadillo (v3.0 3-136 2012 Baylor genbank))(info)GCA_000208655.2

•Dasypus novemcinctus(nine-banded armadillo (v3.0 3-136 2012 Baylor refseq))(info)GCF_000208655.1

Chlamyphoridae

Chaetophractus

•Chaetophractus vellerosus(Screaming hairy armadillo)(info)GCA_004027955.1

Tolypeutes

•Tolypeutes matacus(southern three-banded armadillo)(info)GCA_004025125.1

•Gracilinanus agilis(agile gracile mouse opossum)(info)GCF_016433145.1

Monodelphis

Monodelphis domestica

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 alternate hap 2023))(info)GCA_027917375.1

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 primary hap 2023 refseq))(info)GCF_027887165.1

•Monodelphis domestica(gray short-tailed opossum (MonDom5 2007))(info)GCF_000002295.2

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 primary hap 2023 genbank))(info)GCA_027887165.1

•Macrotis lagotis(bilby (mMagLag1 2024))(info)GCA_037893015.1

•Macrotis lagotis(bilby (mMagLag1 2024))(info)GCF_037893015.1

Diprotodontia

Phalangeridae

Trichosurus

Trichosurus vulpecula

•Trichosurus vulpecula(common brushtail (alternate hap 2020))(info)GCA_011100645.1

•Trichosurus vulpecula(common brushtail (refseq 2020))(info)GCF_011100635.1

•Trichosurus vulpecula(common brushtail (genbank 2020))(info)GCA_011100635.1

Vombatidae

Vombatus

•Vombatus ursinus(common wombat)(info)GCF_900497805.2

Phascolarctidae

Phascolarctos

Phascolarctos cinereus

•Phascolarctos cinereus(koala (Bilbo 61053 2022))(info)GCA_003287225.2

•Phascolarctos cinereus(koala (Bilbo 61053 2022))(info)GCF_003287225.1

•Phascolarctos cinereus(koala (Bilbo 61053 2017))(info)GCF_002099425.1

Potoroidae

Potorous

•Potorous longipes(long-footed potoroo (2021))(info)GCA_904812075.1

Petauridae

Petaurus

Petaurus breviceps

Petaurus breviceps papuanus

•Petaurus breviceps papuanus(sugar glider (PSGF00001 2023))(info)GCA_028583685.1

•Petaurus breviceps papuanus(sugar glider (PSGF00001 2023))(info)GCF_028583685.1

Macropodidae

Notamacropus

Notamacropus eugenii

•Notamacropus eugenii(tammar wallaby (alternate hap 2023))(info)GCA_028389975.1

•Notamacropus eugenii(tammar wallaby (Barry hap1 2025))(info)GCA_048593335.1

•Notamacropus eugenii(tammar wallaby (Barry hap2 2025))(info)GCA_048593345.1

•Notamacropus eugenii(tammar wallaby (v2 primary hap 2023 refseq))(info)GCF_028372415.1

•Notamacropus eugenii(tammar wallaby (v1 primary hap 2023 genbank))(info)GCA_028372415.1

•Notamacropus eugenii(tammar wallaby (v2 primary hap 2023 genbank))(info)GCA_028372415.2

Dasyuromorphia

Dasyuridae

Dasyurus

•Dasyurus viverrinus(eastern quoll)(info)GCA_020854095.1

Dasyurus maculatus

•Dasyurus maculatus(spotted-tailed quoll (Chaos hap1 2025))(info)GCA_048593285.1

•Dasyurus maculatus(spotted-tailed quoll (Chaos hap2 2025))(info)GCA_048593245.1

Sminthopsis

Sminthopsis crassicaudata

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 2025))(info)GCF_048593235.1

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 hap1 2025))(info)GCA_048593235.1

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 hap2 2025))(info)GCA_048593295.1

Sarcophilus

Sarcophilus harrisii

•Sarcophilus harrisii(Tasmanian devil (McLovin hap1 2025))(info)GCA_048593225.1

•Sarcophilus harrisii(Tasmanian devil (McLovin hap2 2025))(info)GCA_048593325.1

•Sarcophilus harrisii(Tasmanian devil (primary hap 2019))(info)GCF_902635505.1

•Sarcophilus harrisii(Tasmanian devil)(info)GCF_000189315.1

Antechinus

Antechinus flavipes

•Antechinus flavipes(yellow-footed antechinus (v2 Samford, QLD, Australia AdamAnt 2021))(info)GCF_016432865.1

•Antechinus flavipes(yellow-footed antechinus (v1 Samford, QLD, Australia AdamAnt 2021))(info)GCA_016432865.1

Notoryctemorphia

Notoryctidae

Notoryctes

•Notoryctes typhlops(marsupial mole (Waite Creek area ABTC07570 2025))(info)GCA_048126345.1

•Dromiciops gliroides(monito del monte (mDroGli1 alternate hap 2021))(info)GCA_019395325.1

•Dromiciops gliroides(monito del monte (primary hap 2021 refseq))(info)GCF_019393635.1

•Dromiciops gliroides(monito del monte (mDroGli1 primary hap 2021 genbank))(info)GCA_019393635.1

Tachyglossus aculeatus

•Tachyglossus aculeatus(Australian echidna (mTacAcu1 alternate hap 2020))(info)GCA_015852515.1

•Tachyglossus aculeatus(Australian echidna (mTacAcu1 primary hap 2020))(info)GCF_015852505.1

Ornithorhynchidae

Ornithorhynchus

Ornithorhynchus anatinus

•Ornithorhynchus anatinus(platypus (alternate hap Pmale09 2020))(info)GCA_004115175.2

•Ornithorhynchus anatinus(platypus (Pmale09 v4 2020))(info)GCF_004115215.2

•Ornithorhynchus anatinus(platypus (Pmale09 v3 2020))(info)GCA_004115215.3

•Ornithorhynchus anatinus(platypus (Pmale09 2018 BGI))(info)GCA_002966995.1

•Ornithorhynchus anatinus(platypus (Pmale09 v1 2019))(info)GCF_004115215.1

Pyxicephalus adspersus

•Pyxicephalus adspersus(African bullfrog (1538 2019))(info)GCA_004786255.1

•Pyxicephalus adspersus(African bullfrog (2023))(info)GCF_032062135.1

Ranidae

Aquarana

Aquarana catesbeiana

•Aquarana catesbeiana(American bullfrog (2022-GZ 2024))(info)GCF_042186555.1

•Aquarana catesbeiana(American bullfrog (primary hap 2024))(info)GCA_037953035.1

Rana

Rana temporaria

•Rana temporaria(common frog (alternate hap 2021))(info)GCA_905171725.1

•Rana temporaria(European common frog (2021))(info)GCF_905171775.1

Pelophylax

Pelophylax lessonae

•Pelophylax lessonae(pool frog (hap1 2025))(info)GCA_965119305.1

•Pelophylax lessonae(pool frog (hap2 2025))(info)GCA_965119315.1

Mantellidae

Mantellinae

Mantella

madagascariensis group

Mantella aurantiaca

•Mantella aurantiaca(golden mantella (hap1 2025))(info)GCA_048565345.1

•Mantella aurantiaca(golden mantella (hap2 2025))(info)GCA_048565335.1

Dicroglossidae

Dicroglossinae

Nanorana

•Nanorana parkeri(High Himalaya frog)(info)GCF_000935625.1

Hyloidea

Bufonidae

Bufo

Bufo gargarizans species complex

•Bufo gargarizans(Asiatic toad (SCDJY-AF-19 2020))(info)GCF_014858855.1

Bufo bufo

•Bufo bufo(common toad (alternate hap 2021))(info)GCA_905171715.1

•Bufo bufo(common toad (primary hap 2021))(info)GCF_905171765.1

Rhinella

•Rhinella marina(marine toad (2024))(info)GCA_900303285.2

Aromobatidae

Allobatinae

Allobates

•Allobates femoralis(brilliant-thighed poison frog (Ecuador 8001 2023))(info)GCA_033576535.1

Anomaloglossinae

Anomaloglossus

Anomaloglossus baeobatrachus

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap1 2025 genbank))(info)GCA_048569485.1

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap1 2025 refseq))(info)GCF_048569485.1

•Anomaloglossus baeobatrachus(frog A.baeobatrachus (hap2 2025))(info)GCA_048569465.1

Rhinodermatidae

Rhinoderma

•Rhinoderma darwinii(Darwin's frog (hap1 2025))(info)GCF_050947455.1

Dendrobatidae

Dendrobatinae

Oophaga

•Oophaga sylvatica(diablito poison frog (Paru LO004 2023))(info)GCA_033576555.1

Dendrobates

Dendrobates tinctorius

•Dendrobates tinctorius(dyeing poison frog (UK_male_01 2024 genbank))(info)GCA_039654945.1

•Dendrobates tinctorius(dyeing poison frog (UK_male_01 2024 refseq))(info)GCF_039654945.1

Phyllobates

•Phyllobates terribilis(golden poison dart frog (yellow primary hap 2024))(info)GCF_046119375.1

Ranitomeya

Ranitomeya imitator

•Ranitomeya imitator(mimic poison frog (primary hap 2023 genbank))(info)GCA_032444005.1

•Ranitomeya imitator(mimic poison frog (primary hap 2023 refseq))(info)GCF_032444005.1

Ranitomeya variabilis

•Ranitomeya variabilis(Zimmermann's poison frog (aRanVar5hap1 2025 genbank))(info)GCA_051348905.1

•Ranitomeya variabilis(Zimmermann's poison frog (aRanVar5hap1 2025 refseq))(info)GCF_051348905.1

Dendropsophus ebraccatus

•Dendropsophus ebraccatus(hourglass treefrog (maternal 2023 genbank))(info)GCA_027789725.1

•Dendropsophus ebraccatus(hourglass treefrog (paternal 2023 refseq))(info)GCF_027789765.1

•Dendropsophus ebraccatus(hourglass treefrog (paternal 2023 genbank))(info)GCA_027789765.1

Hylini

Hyla

Hyla sarda

•Hyla sarda(Sardinian treefrog (hap1 2023 refseq))(info)GCF_029499605.1

•Hyla sarda(Sardinian treefrog (hap2 2023))(info)GCA_029493135.1

•Hyla sarda(Sardinian treefrog (hap1 2023 genbank))(info)GCA_029499605.1

Eleutherodactylidae

Eleutherodactylinae

Eleutherodactylus

Eleutherodactylus coqui

•Eleutherodactylus coqui(Puerto Rican coqui (hap1 2024 refseq))(info)GCF_035609145.1

•Eleutherodactylus coqui(Puerto Rican coqui (hap2 2024))(info)GCA_035609135.1

•Eleutherodactylus coqui(Puerto Rican coqui (hap1 2024 genbank))(info)GCA_035609145.1

•Leptodactylus fuscus(rufous frog (hap1 2023))(info)GCA_031893025.1

•Leptodactylus fuscus(rufous frog (hap2 2023 genbank))(info)GCA_031893055.1

•Leptodactylus fuscus(rufous frog (hap2 2023 refseq))(info)GCF_031893055.1

Leiuperinae

Engystomops

Engystomops pustulosus

•Engystomops pustulosus(Tungara frog (aEngPut4 maternal hap 2024 refseq))(info)GCF_040894005.1

•Engystomops pustulosus(Tungara frog (aEngPut4 paternal hap 2024))(info)GCA_040894015.1

•Engystomops pustulosus(Tungara frog (aEngPut4 maternal hap 2024 genbank))(info)GCA_040894005.1

Pseudophryne corroboree

•Pseudophryne corroboree(corroboree frog (hap1 2023))(info)GCA_028390055.1

•Pseudophryne corroboree(corroboree frog (hap2 2023 refseq))(info)GCF_028390025.1

•Pseudophryne corroboree(corroboree frog (hap2 2023 genbank))(info)GCA_028390025.1

Limnodynastidae

Mixophyes

Mixophyes fleayi

•Mixophyes fleayi(Fleay's barred frog (hap1 2024 genbank))(info)GCA_038048845.1

•Mixophyes fleayi(Fleay's barred frog (hap1 2024 refseq))(info)GCF_038048845.1

•Mixophyes fleayi(Fleay's barred frog (hap2 2024))(info)GCA_038048865.1

Gastrophryne carolinensis

•Gastrophryne carolinensis(eastern narrow-mouthed toad (hap2 2023))(info)GCA_027917415.1

•Gastrophryne carolinensis(eastern narrow-mouthed toad (primary haplotype 2023))(info)GCA_027917425.1

Hyperoliidae

Hyperolius

Hyperolius riggenbachi

•Hyperolius riggenbachi(Riggenbach's reed frog (aHypRig1 alternate hap 2024))(info)GCA_040937895.1

•Hyperolius riggenbachi(Riggenbach's reed frog (aHypRig1 primary hap 2024))(info)GCF_040937935.1

•Xenopus laevis(African clawed frog (2021))(info)GCF_017654675.1

•Xenopus laevis(African clawed frog (2016))(info)GCF_001663975.1

Xenopus petersii

•Xenopus petersii(Peter's clawed frog (aXenPet1 2024))(info)GCA_038501915.1

•Xenopus petersii(Peter's clawed frog (aXenPet1 2024))(info)GCA_038501925.1

Silurana

•Xenopus tropicalis(tropical clawed frog)(info)GCF_000004195.4

Rhinophrynidae

Rhinophrynus

Rhinophrynus dorsalis

•Rhinophrynus dorsalis(Mexican burrowing toad (hap1 2024))(info)GCA_037306005.1

•Rhinophrynus dorsalis(Mexican burrowing toad (hap2 2024))(info)GCA_037306015.1

•Pelobates fuscus(common spadefoot toad (primary hap 2024 genbank))(info)GCA_036172605.1

•Pelobates fuscus(common spadefoot toad (primary hap 2024 refseq))(info)GCF_036172605.1

Spea

Spea bombifrons

•Spea bombifrons(plains spadefoot toad (alternate hap 2022))(info)GCA_027382365.2

•Spea bombifrons(plains spadefoot toad (primary hap 2022))(info)GCF_027358695.1

Spea hammondii

•Spea hammondii(western spadefoot toad (hap1 HBS 135690 2023))(info)GCA_029215705.1

•Spea hammondii(western spadefoot toad (hap2 HBS 135690 2023))(info)GCA_029215755.1

Pelodytidae

Pelodytes

•Pelodytes ibericus(Iberian parsley frog (aPelIbe1 2024))(info)GCA_036172795.1

Bombinatoridae

Bombina

Bombina bombina

•Bombina bombina(fire-bellied toad (alternate hap 2023))(info)GCA_027579415.1

•Bombina bombina(fire-bellied toad (primary hap 2023 refseq))(info)GCF_027579735.1

•Bombina bombina(fire-bellied toad (primary hap 2023 genbank))(info)GCA_027579735.1

Bombina variegata

•Bombina variegata(yellow-bellied toad (maternal hap 2024))(info)GCA_964205305.1

•Bombina variegata(yellow-bellied toad (paternal hap 2024))(info)GCA_964205295.1

•Discoglossus pictus(painted frog (alternate hap 2022))(info)GCA_027410455.1

•Discoglossus pictus(painted frog (primary hap 2022))(info)GCA_027410445.1

Ascaphidae

Ascaphus

Ascaphus truei

•Ascaphus truei(tailed frog (A.truei hap1 2024 genbank))(info)GCA_040206685.1

•Ascaphus truei(tailed frog (A.truei hap1 2024 refseq))(info)GCF_040206685.1

•Ascaphus truei(tailed frog (A.truei hap2 2024))(info)GCA_040206675.1

•Ambystoma mexicanum(axolotl (DD151 2021))(info)GCA_002915635.3

•Ambystoma mexicanum(axolotl (Mex_15411 2024))(info)GCF_040938575.1

Salamandridae

Pleurodelinae

Lissotriton

•Lissotriton vulgaris(common newt (primary hap 2024))(info)GCA_964263255.1

•Lissotriton helveticus(palmate newt (primary hap 2024))(info)GCA_964261635.1

Pleurodeles

Pleurodeles waltl

•Pleurodeles waltl(Iberian ribbed newt (20211129_DDA 2022 genbank))(info)GCA_026652325.1

•Pleurodeles waltl(Iberian ribbed newt (hap1 20211129_DDA 2024 refseq))(info)GCF_031143425.1

Triturus

•Triturus cristatus(warty newt (primary hap 2024))(info)GCA_964204655.1

Gymnophiona

Dermophiidae

Geotrypetes

Geotrypetes seraphini

•Geotrypetes seraphini(Gaboon caecilian (alternate hap 2019))(info)GCA_902459495.1

•Geotrypetes seraphini(Gaboon caecilian (v1.2 2021 genbank))(info)GCA_902459505.2

•Geotrypetes seraphini(Gaboon caecilian (v1.1 2019 genbank))(info)GCA_902459505.1

•Geotrypetes seraphini(Gaboon caecilian (v1.1 2019 refseq))(info)GCF_902459505.1

Siphonopidae

Microcaecilia

Microcaecilia unicolor

•Microcaecilia unicolor(tiny Cayenne caecilian (alternate hap 2019))(info)GCA_901765105.1

•Microcaecilia unicolor(tiny Cayenne caecilian (v2 2021))(info)GCA_901765095.2

•Microcaecilia unicolor(tiny Cayenne caecilian (v1 2019))(info)GCF_901765095.1

Rhinatrematidae

Rhinatrema

Rhinatrema bivittatum

•Rhinatrema bivittatum(two-lined caecilian (alternate hap 2019))(info)GCA_901001175.1

•Rhinatrema bivittatum(two-lined caecilian (v1.2 2021 genbank))(info)GCA_901001135.2

•Rhinatrema bivittatum(two-lined caecilian (v1.1 2019 refseq))(info)GCF_901001135.1

•Lepidosiren paradoxa(South American lungfish (Aquarium Glaser DD20211129a alternate hap 2024))(info)GCA_040438655.1

Protopteridae

Protopterus

Protopterus annectens

•Protopterus annectens(West African lungfish (Aquariam Glaser DD20220218a primary hap 2024))(info)GCA_040939525.1

•Protopterus annectens(West African lungfish (FY-2018-M 2021))(info)GCF_019279795.1

•Latimeria chalumnae(coelacanth)(info)GCF_000225785.1

•Latimeria chalumnae(coelacanth (fLatCha1 primary hap 2024))(info)GCF_037176945.1

•Sebastes fasciatus(Acadian redfish (fSebFas1 primary hap 2024 refseq))(info)GCF_043250625.1

•Sebastes fasciatus(Acadian redfish (fSebFas1 primary hap 2024))(info)GCA_043250625.1

Sebastes umbrosus

•Sebastes umbrosus(honeycomb rockfish (fSebUmb1 alternate hap 2020))(info)GCA_015220095.1

•Sebastes umbrosus(honeycomb rockfish (primary hap 2020))(info)GCF_015220745.1

•Harpagifer antarcticus(Antarctic spiny plunderfish (primary hap 2020))(info)GCA_902827135.1

Nototheniidae

Notothenia

•Notothenia coriiceps(black rockcod)(info)GCF_000735185.1

Notothenia rossii

•Notothenia rossii(marbled rockcod (alternate hap 2023))(info)GCA_949606865.1

•Notothenia rossii(marbled rockcod (primary hap 2023))(info)GCA_949606895.1

Trematomus

•Trematomus bernacchii(emerald rockcod)(info)GCF_902827165.1

Bovichtidae

Cottoperca

Cottoperca gobio

•Cottoperca gobio(channel bull blenny (2019 refseq))(info)GCF_900634415.1

•Cottoperca gobio(channel bull blenny (alternate hap 2019))(info)GCA_900634435.1

•Cottoperca gobio(channel bull blenny (2019 genbank))(info)GCA_900634415.1

Eleginopidae

Eleginops

•Eleginops maclovinus(Patagonian blennie (Puerto Natales JMC-PN-2008 2024))(info)GCF_036324505.1

Bathydraconidae

Gymnodraco

•Gymnodraco acuticeps(ploughfish)(info)GCF_902827175.1

Channichthyidae

Pseudochaenichthys

Pseudochaenichthys georgianus

•Pseudochaenichthys georgianus(South Georgia icefish (v2 primary hap 2022))(info)GCF_902827115.2

•Pseudochaenichthys georgianus(South Georgia icefish (v1 primary hap 2020))(info)GCF_902827115.1

•Etheostoma cragini(Arkansas darter)(info)GCF_013103735.1

Oligocephalus

•Etheostoma spectabile(orangethroat darter)(info)GCF_008692095.1

Percinae

Perca

•Perca fluviatilis(European perch)(info)GCF_010015445.1

•Perca flavescens(yellow perch (YP-PL-M2 2019))(info)GCF_004354835.1

Luciopercinae

Sander

Sander lucioperca

•Sander lucioperca(pike-perch)(info)GCF_008315115.2

•Sander lucioperca(pike-perch)(info)GCF_008315115.1

Trachinidae

Echiichthys

•Echiichthys vipera(lesser weever (primary hap 2023))(info)GCA_963691815.1

•Centropristis striata(black seabass (Rhode Island RG_2023a 2023))(info)GCF_030273125.1

Epinephelinae

Epinephelini

Epinephelus

•Epinephelus fuscoguttatus(brown-marbled grouper (2020))(info)GCF_011397635.1

Epinephelus lanceolatus

•Epinephelus lanceolatus(giant grouper (andai-2023 2024))(info)GCA_041903045.1

•Epinephelus lanceolatus(giant grouper (andai-2023 2024))(info)GCF_041903045.1

•Epinephelus lanceolatus(giant grouper (Andai001 2019))(info)GCF_005281545.1

•Epinephelus moara(kelp grouper (mb 2019))(info)GCF_006386435.1

Epinephelus rankini

•Epinephelus rankini(Rankin cod (hap1 2025))(info)GCA_048129235.1

•Epinephelus rankini(Rankin cod (hap2 2025))(info)GCA_048129065.1

Cromileptes

•Cromileptes altivelis(humpback grouper (ca_2020 2021))(info)GCA_019925165.1

Plectropomus

Plectropomus leopardus

•Plectropomus leopardus(leopard coralgrouper)(info)GCF_008729295.1

•Plectropomus leopardus(leopard coralgrouper (2020))(info)GCA_011397275.1

•Plectropomus leopardus(leopard coralgrouper (mb 2020))(info)GCA_008729295.2

•Lycodopsis pacificus(blackbelly eelpout (fLycPai1 haplotype 1 2023))(info)GCA_028021495.1

•Lycodopsis pacificus(blackbelly eelpout (fLycPai1 haplotype 2 2023))(info)GCA_028022725.1

Gymnelinae

Melanostigma

Melanostigma gelatinosum

•Melanostigma gelatinosum(limp eelpout (alternate hap 2023))(info)GCA_949748265.1

•Melanostigma gelatinosum(limp eelpout (primary hap 2023))(info)GCA_949748355.1

Stichaeidae

Xiphisterinae

Cebidichthys

Cebidichthys violaceus

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022))(info)GCA_023349535.1

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022))(info)GCA_023349555.1

•Cebidichthys violaceus(monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022))(info)GCF_023349555.1

•Pholis gunnellus(rock gunnel (alternate hap 2021))(info)GCA_910591705.2

•Pholis gunnellus(rock gunnel (primary hap 2021))(info)GCA_910591455.2

Anarhichadidae

Anarhichas

•Anarhichas minor(spotted wolffish (MPS153535 2025))(info)GCF_050575085.1

Anarrhichthys

•Anarrhichthys ocellatus(wolf-eel)(info)GCF_004355925.1

•Taurulus bubalis(longspined bullhead (.1 primary hap 2021))(info)GCA_910589615.1

•Taurulus bubalis(longspined bullhead (fTauBub2.1 alternate hap 2021))(info)GCA_910589325.1

Clinocottus

Clinocottus analis

•Clinocottus analis(woolly sculpin (alternate hap CAN_PGR_092001 2022))(info)GCA_023055415.1

•Clinocottus analis(woolly sculpin (CAN_PGR_092001 2022))(info)GCA_023055335.1

•Clinocottus analis(woolly sculpin (CAN_PGR_092001 primary hap 2022))(info)GCF_023055335.1

•Cyclopterus lumpus(lumpfish (alternate hap 2019))(info)GCA_009769515.1

•Cyclopterus lumpus(lumpfish (primary hap v2.1 2023 genbank))(info)GCA_963457625.1

•Cyclopterus lumpus(lumpfish (v1 primary hap 2019 refseq))(info)GCF_009769545.1

•Cyclopterus lumpus(lumpfish (primary hap 2019 genbank))(info)GCA_009769545.1

Liparidae

Pseudoliparis

•Pseudoliparis swirei(Mariana snailfish (Mariana Trench HS2019 2023))(info)GCF_029220125.1

•Pungitius pungitius(ninespine stickleback (alternate hap 2023))(info)GCA_949316245.1

•Pungitius pungitius(ninespine stickleback (NSP_V7 2020))(info)GCF_902500615.1

•Pungitius pungitius(ninespine stickleback (primary hap 2023 genbank))(info)GCA_949316345.1

•Pungitius pungitius(ninespine stickleback (primary hap 2023 refseq))(info)GCF_949316345.1

Spinachia

Spinachia spinachia

•Spinachia spinachia(sea stickleback (SK-2024b hap1 2025))(info)GCA_048126635.1

•Spinachia spinachia(sea stickleback (SK-2024b hap2 2025))(info)GCA_048127205.1

Gasterosteus

Gasterosteus aculeatus

•Gasterosteus aculeatus(three-spined stickleback (fGasAcu3.hap1.1 2024))(info)GCF_964276395.1

•Gasterosteus aculeatus(three-spined stickleback (hap1 2024))(info)GCA_964276395.1

•Gasterosteus aculeatus(three-spined stickleback (hap2 2024))(info)GCA_964276385.1

•Gasterosteus aculeatus aculeatus(three-spined stickleback)(info)GCF_016920845.1

Anoplopomatales

Anoplopomatidae

Anoplopoma

•Anoplopoma fimbria(sablefish (Golden Eagle Sablefish UVic2021 2023))(info)GCF_027596085.1

Triglioidei

Triglidae

Eutrigla

•Eutrigla gurnardus(grey gurnard (primary hap 2023))(info)GCA_963514095.1

•Labrus bergylta(ballan wrasse (2016))(info)GCF_900080235.1

•Labrus bergylta(ballan wrasse (primary hap 2024 genbank))(info)GCA_963930695.1

•Labrus bergylta(ballan wrasse (primary hap 2024 refseq))(info)GCF_963930695.1

•Labrus mixtus(cuckoo wrasse (primary hap 2023))(info)GCF_963584025.1

Choerodon

•Choerodon schoenleinii(blackspot tuskfish (SL-2024 2025))(info)GCA_047301625.1

Labroides

•Labroides dimidiatus(bluestreak cleaner wrasse (JK-2023 2023))(info)GCA_030710495.1

Semicossyphus

Semicossyphus pulcher

•Semicossyphus pulcher(bony fish S.pulcher (SPU_LCO1_2020_fin primary hap 2022))(info)GCF_022749685.1

•Semicossyphus pulcher(California sheephead (SPU_LCO1_2020_fin alternate hap 2022))(info)GCA_022749735.1

•Semicossyphus pulcher(California sheephead (SPU_LCO1_2020_fin primary hap 2022))(info)GCA_022749685.1

Symphodus

•Symphodus melops(corkwing wrasse (primary hap 2022))(info)GCA_947650265.1

Tautogolabrus

Tautogolabrus adspersus

•Tautogolabrus adspersus(cunner (fTauAds1 alternate hap 2021))(info)GCA_020745675.1

•Tautogolabrus adspersus(cunner (primary hap 2021))(info)GCA_020745685.1

Cheilinus

•Cheilinus undulatus(humphead wrasse)(info)GCF_018320785.1

Notolabrus

Notolabrus celidotus

•Notolabrus celidotus(New Zealand spotty (alternate hap 2019 genbank))(info)GCA_009762545.1

•Notolabrus celidotus(New Zealand spotty (primary hap 2019 genbank))(info)GCA_009762535.1

•Notolabrus celidotus(New Zealand spotty (primary hap refseq))(info)GCF_009762535.1

Halichoeres

•Halichoeres trimaculatus(threespot wrasse (MK-OKI-2021-1 2023))(info)GCF_033239565.1

Spariformes

Sparidae

Acanthopagrus

•Acanthopagrus schlegelii(black porgy (SG-2024 2024))(info)GCA_041753875.1

Acanthopagrus latus

•Acanthopagrus latus(yellowfin seabream (v.2019 alternate hap 2020))(info)GCA_904848175.1

•Acanthopagrus latus(yellowfin seabream (v.2019 primary hap 2020))(info)GCF_904848185.1

Pagrus

Pagrus pagrus

•Pagrus pagrus(common seabream (hap1.1 2025))(info)GCA_965226575.1

•Pagrus pagrus(common seabream (hap2.1 2025))(info)GCA_965225695.1

Pagrus major

•Pagrus major(red seabream (2024))(info)GCA_040436345.1

•Pagrus major(red seabream (2024))(info)GCF_040436345.1

Sparus

Sparus aurata

•Sparus aurata(gilthead seabream (alternate hap 2019))(info)GCA_900880695.1

•Sparus aurata(gilthead seabream (v2 2021))(info)GCA_900880675.2

•Sparus aurata(gilthead seabream (v1 2019))(info)GCF_900880675.1

•Lethrinus nebulosus(spangled emperor (hap1 2024))(info)GCA_045362495.1

•Lethrinus nebulosus(spangled emperor (hap2 2024))(info)GCA_045362485.1

•Brachionichthys hirsutus(bony fish B.hirsutus (HB-005 2024))(info)GCF_040956055.1

Antennariidae

Antennarius

•Antennarius striatus(striated frogfish (MH-2024 2024))(info)GCF_040054535.1

Antennarius maculatus

•Antennarius maculatus(warty frogfish (fAntMac1 alternate hap 2020))(info)GCA_013347815.1

•Antennarius maculatus(warty frogfish (primary hap 2020))(info)GCA_013358685.1

Eupercaria incertae sedis

Scatophagidae

Scatophagus

Scatophagus argus

•Scatophagus argus(butterfish (fScaArg1 alternate hap 2021))(info)GCA_020382915.1

•Scatophagus argus(butterfish (primary hap 2021))(info)GCF_020382885.2

Moronidae

Dicentrarchus

•Dicentrarchus labrax(European seabass (2021))(info)GCF_905237075.1

Morone

•Morone saxatilis(striped sea-bass)(info)GCF_004916995.1

Sciaenidae

Larimichthys

•Larimichthys crocea(large yellow croaker)(info)GCF_000972845.2

Sciaenops

•Sciaenops ocellatus(red drum (XU1910 2020))(info)GCA_014183145.1

Chaetodontiformes

Chaetodontidae

Chaetodon

Chaetodon trifascialis

•Chaetodon trifascialis(chevron butterflyfish (hap1 2024 refseq))(info)GCF_039877785.1

•Chaetodon trifascialis(chevron butterflyfish (hap2 2024))(info)GCA_039877575.1

•Chaetodon trifascialis(chevron butterflyfish (hap1 2024 genbank))(info)GCA_039877785.1

•Chaetodon auriga(threadfin butterflyfish (fChaAug3hap1 2025))(info)GCF_051107435.1

Chelmon

Chelmon rostratus

•Chelmon rostratus(copperband butterflyfish (fCheRos1 alternate hap 2021))(info)GCA_017976315.1

•Chelmon rostratus(copperband butterflyfish (primary hap 2021))(info)GCF_017976325.1

•Nelusetta ayraudi(Chinaman-leatherjacket (Tasmania G7.1 2024))(info)GCF_046127955.1

•Takifugu bimaculatus(double-spotted pufferfish T.bimaculatus (TB-2018 2019))(info)GCA_004026145.2

•Takifugu flavidus(sansaifugu (HTHZ2018 2019))(info)GCF_003711565.1

Takifugu rubripes

•Takifugu rubripes(torafugu (alternate hap 2019))(info)GCA_901000745.3

•Takifugu rubripes(torafugu (fTakRub1.2 2019 refseq))(info)GCF_901000725.2

•Takifugu rubripes(torafugu (fTakRub1.3 2021 genbank))(info)GCA_901000725.3

Tetraodon

•Tetraodon nigroviridis(spotted green pufferfish (2004))(info)GCA_000180735.1

Symphorus nematophorus

•Symphorus nematophorus(chinamanfish (OG11 2025))(info)GCA_048128715.1

•Symphorus nematophorus(chinamanfish (OG11 2025))(info)GCA_048128725.1

Etelinae

Pristipomoides

Pristipomoides typus

•Pristipomoides typus(sharptooth jobfish (hap1 2024))(info)GCA_045363895.1

•Pristipomoides typus(sharptooth jobfish (hap2 2024))(info)GCA_045363885.1

Caesioninae

Caesio

Caesio teres

•Caesio teres(yellow and blueback fusilier (OG672 2025))(info)GCA_048129025.1

•Caesio teres(yellow and blueback fusilier (OG672 2025))(info)GCA_048129055.1

Uranoscopiformes

Ammodytidae

Hyperoplus

Hyperoplus immaculatus

•Hyperoplus immaculatus(greater sand-eel (alternate hap 2023))(info)GCA_949358355.1

•Hyperoplus immaculatus(greater sand-eel (primary hap 2023))(info)GCA_949357725.1

Ammodytes

Ammodytes marinus

•Ammodytes marinus(lesser sand-eel (alternate hap 2023))(info)GCA_950004245.1

•Ammodytes marinus(lesser sand-eel (primary hap 2023))(info)GCA_949987685.1

Micropterus salmoides

•Micropterus salmoides(largemouth bass (2-A1 2021))(info)GCA_019677235.1

•Micropterus salmoides(largemouth bass (LMB-PRFRI aquatic 2020))(info)GCF_014851395.1

•Micropterus dolomieu(smallmouth bass)(info)GCF_021292245.1

Sinipercidae

Siniperca

Siniperca chuatsi

•Siniperca chuatsi(mandarin fish (A2ci 2020))(info)GCA_011952085.1

•Siniperca chuatsi(mandarin fish (FFG_IHB_CAS 2021))(info)GCF_020085105.1

Enoplosidae

Enoplosus

Enoplosus armatus

•Enoplosus armatus(old wife E.armatus (hap1 2024))(info)GCF_043641665.1

•Enoplosus armatus(old wife E.armatus (hap2 2024))(info)GCA_043640875.1

Percichthyoidei

Percichthyidae

Macquaria

•Macquaria australasica(Macquarie perch (MP_SCH12 2025))(info)GCA_005408345.2

Acropomatiformes

Pempheridae

Pempheris

Pempheris klunzingeri

•Pempheris klunzingeri(rouch bullseye (RE-2024b hap1 2024 refseq))(info)GCF_042242105.1

•Pempheris klunzingeri(rough bullseye (RE-2024b hap2 2024))(info)GCA_042242125.1

•Pempheris klunzingeri(rough bullseye (RE-2024b hap1 2024 genbank))(info)GCA_042242105.1

Lateolabracidae

Lateolabrax

•Lateolabrax maculatus(spotted sea bass (ZS-2023 2023))(info)GCA_031216445.1

•Syngnathoides biaculeatus(alligator pipefish (LvHL_M 2021))(info)GCF_019802595.1

Doryrhamphus

•Doryrhamphus excisus(bluestripe pipefish (RoL2022-K1 2023))(info)GCF_030265055.1

Syngnathus

Syngnathus typhle

•Syngnathus typhle(broad-nosed pipefish (SK-2024d hap1 2025))(info)GCA_048301445.1

•Syngnathus typhle(broad-nosed pipefish (SK-2024d hap2 2025))(info)GCA_048301605.1

•Syngnathus typhle(broad-nosed pipefish (Sweden RoL2023-S1 2023))(info)GCF_033458585.1

Syngnathus acus

•Syngnathus acus(greater pipefish (v1 alternate hap 2019))(info)GCA_901709685.1

•Syngnathus acus(greater pipefish (v1.2 2020 refseq))(info)GCF_901709675.1

•Syngnathus acus(greater pipefish (v2 2023 genbank))(info)GCA_948146105.1

•Syngnathus acus(greater pipefish (v2 alternate haplotype 2023))(info)GCA_948146095.1

•Syngnathus acus(greater pipefish (v1.1 2019))(info)GCA_901709675.1

Syngnathus scovelli

•Syngnathus scovelli(Gulf pipefish (Florida 2022))(info)GCF_024217435.2

•Syngnathus scovelli(Gulf pipefish (RoL_Ssco_1.1 Florida 2022 refseq))(info)GCF_024217435.1

•Syngnathus scovelli(Gulf pipefish (RoL_Ssco_1.2 Florida 2022 genbank))(info)GCA_024217435.4

Phyllopteryx

•Phyllopteryx taeniolatus(common seadragon (TA_2022b 2022))(info)GCF_024500385.1

Festucalex

•Festucalex cinctus(girdled pipefish (MCC-2025b 2025))(info)GCF_051991245.1

Phycodurus

•Phycodurus eques(leafy seadragon (BA_2022a 2022))(info)GCF_024500275.1

Vanacampus

•Vanacampus margaritifer(mother-of-pearl pipefish (UIUO_Vmar 2025))(info)GCF_051991255.1

Dunckerocampus

•Dunckerocampus dactyliophorus(ringed pipefish (RoL2022-P2 2023))(info)GCF_027744805.1

Corythoichthys

•Corythoichthys intestinalis(scribbled pipefish (RoL2023-P3 2023))(info)GCF_030265065.1

Entelurus

•Entelurus aequoreus(snake pipefish (RoL-2023_Sb 2023))(info)GCF_033978785.1

Stigmatopora

•Stigmatopora argus(spotted pipefish (UIUO_Sarg 2025))(info)GCF_051989625.1

•Stigmatopora nigra(wide-bodied pipefish (UIUO_SnigA 2025))(info)GCF_051989575.1

Nerophis

•Nerophis ophidion(straightnose pipefish (RoL-2023_Sa 2023))(info)GCF_033978795.1

Nerophis lumbriciformis

•Nerophis lumbriciformis(worm pipefish (v2.1 RoL_2023-P12025))(info)GCF_033978685.3

•Nerophis lumbriciformis(worm pipefish (v1 RoL_2023-P1 2023))(info)GCF_033978685.1

Hippocampinae

Hippocampus

•Hippocampus zosterae(dwarf seahorse (Florida 2022))(info)GCF_025434085.1

Hippocampus comes

•Hippocampus comes(tiger tail seahorse (QL1 v2 2016))(info)GCF_001891065.2

•Hippocampus comes(tiger tail seahorse (QL1 v1 2016))(info)GCF_001891065.1

Callionymoidei

Callionymidae

Synchiropus

•Synchiropus splendidus(mandarin fish (RoL2022-P1 2023))(info)GCF_027744825.2

Synchiropus picturatus

•Synchiropus picturatus(picturesque dragonet (SynPic1 hap1 2024))(info)GCA_044231685.1

•Synchiropus picturatus(picturesque dragonet (SynPic1 hap2 2024))(info)GCA_044231675.1

Neosynchiropus

Neosynchiropus ocellatus

•Neosynchiropus ocellatus(ocellated dragonet (captive hap1 2024))(info)GCA_044231665.1

•Neosynchiropus ocellatus(ocellated dragonet (captive hap2 2024))(info)GCA_044231645.1

Syngnathiformes incertae sedis

Aulostomidae

Aulostomus

Aulostomus maculatus

•Aulostomus maculatus(trumpetfish (SK-2024c 2025))(info)GCA_048301465.1

•Aulostomus maculatus(trumpetfish (SK-2024c 2025))(info)GCA_048301475.1

•Poecilia formosa(Amazon molly)(info)GCF_000485575.1

•Poecilia reticulata(guppy)(info)GCF_000633615.1

•Poecilia latipinna(sailfin molly)(info)GCF_001443285.1

•Poecilia mexicana(shortfin molly)(info)GCF_001443325.1

Poeciliopsis

•Poeciliopsis prolifica(blackstripe livebearer (line A6 2022))(info)GCF_027474105.1

Xiphophorus

•Xiphophorus hellerii(green swordtail)(info)GCF_003331165.1

•Xiphophorus couchianus(Monterrey platyfish)(info)GCF_001444195.1

•Xiphophorus maculatus(southern platyfish)(info)GCF_002775205.1

Gambusia

•Gambusia affinis(western mosquitofish)(info)GCF_019740435.1

Fundulidae

Fundulus

Fundulus diaphanus

•Fundulus diaphanus(banded killifish (hap1 2024))(info)GCA_037039145.1

•Fundulus diaphanus(banded killifish (hap2 2024))(info)GCA_037038625.1

Fundulus heteroclitus

•Fundulus heteroclitus(mummichog (Maine))(info)GCF_000826765.1

•Fundulus heteroclitus(mummichog (U. Missouri))(info)GCF_011125445.2

Goodeidae

Girardinichthys

Girardinichthys multiradiatus

•Girardinichthys multiradiatus(dark-edged splitfin (DD_20200921_A 2022 refseq))(info)GCF_021462225.1

•Girardinichthys multiradiatus(dark-edged splitfin (DD_20200921_A 2022 genbank))(info)GCA_021462225.2

•Anableps anableps(largescale foureyes (fAnaAna1 alternate hap 2020))(info)GCA_014839705.1

•Anableps anableps(largescale foureyes (primary hap 2020))(info)GCA_014839685.1

•Cyprinodon variegatus(sheepshead minnow)(info)GCF_000732505.1

•Cyprinodon tularosa(White Sands pupfish)(info)GCF_016077235.1

Aplocheiloidei

Rivulidae

Austrofundulus

•Austrofundulus limnaeus(annual killifish)(info)GCF_001266775.1

Kryptolebias

Kryptolebias marmoratus

•Kryptolebias marmoratus(mangrove rivulus)(info)GCF_001649575.2

•Kryptolebias marmoratus(mangrove rivulus)(info)GCF_001649575.1

Nematolebias

Nematolebias whitei

•Nematolebias whitei(Rio pearlfish (Nwh7 v2 2021))(info)GCF_014905685.2

•Nematolebias whitei(Rio pearlfish (Nwh7 v1 2020))(info)GCF_014905685.1

Nothobranchiidae

Nothobranchius

Nothobranchius furzeri

•Nothobranchius furzeri(turquoise killifish (GRZ 2015))(info)GCF_001465895.1

•Nothobranchius furzeri(turquoise killifish (GRZ-AD 2024))(info)GCF_043380555.1

•Nothobranchius furzeri(turquoise killifish (MZM-0403 2023))(info)GCF_027789165.1

•Menidia menidia(Atlantic silverside (fMenMen1 hap1 2025))(info)GCA_048628825.1

•Menidia menidia(Atlantic silverside (fMenMen1 hap2 2025))(info)GCA_048544195.1

Atherinopsinae

Leuresthes

•Leuresthes tenuis(California grunion (hap1 2024))(info)GCF_036924035.1

Odontesthes

Odontesthes bonariensis

•Odontesthes bonariensis(pejerrey (fOdoBon6 haplotype 2 2023))(info)GCA_027942885.1

•Odontesthes bonariensis(pejerrey (hap1 2023 genbank))(info)GCA_027942865.1

•Odontesthes bonariensis(pejerrey (hap1 2023 refseq))(info)GCF_027942865.1

Melanotaeniidae

Melanotaenia

Melanotaenia boesemani

•Melanotaenia boesemani(Boeseman's rainbowfish (fMelBoe1 alternate hap 2021))(info)GCA_017639755.1

•Melanotaenia boesemani(Boeseman's rainbowfish (primary hap 2021))(info)GCF_017639745.1

Telmatherinidae

Telmatherina

Telmatherina bonti

•Telmatherina bonti(bonti-bonti (fTelBon1 alternate hap 2022))(info)GCA_933228925.1

•Telmatherina bonti(bonti-bonti (primary hap 2022))(info)GCA_933228915.1

•Xenentodon cancila(freshwater garfish (fXenCan1 alternate hap 2020))(info)GCA_014839645.1

•Xenentodon cancila(freshwater garfish (primary hap 2020))(info)GCA_014839995.1

Cololabis

•Cololabis saira(Pacific saury (AMF1-May2022 2023))(info)GCF_033807715.1

•Oryzias melastigma(Indian medaka)(info)GCF_002922805.2

•Oryzias melastigma(Indian medaka)(info)GCF_002922805.1

•Oryzias latipes(Japanese medaka)(info)GCF_002234675.1

Ovalentaria incertae sedis

Pomacentridae

Stegastes

•Stegastes partitus(bicolor damselfish)(info)GCF_000690725.1

Amphiprion

Amphiprion ocellaris

•Amphiprion ocellaris(clown anemonefish (DU_AmpOce 2017))(info)GCF_002776465.1

•Amphiprion ocellaris(clown anemonefish (Okinawa individual 3 2022))(info)GCF_022539595.1

Acanthochromis

Acanthochromis polyacanthus

•Acanthochromis polyacanthus(spiny chromis (Palm Island Apoly-LR-REF 2022))(info)GCF_021347895.1

•Acanthochromis polyacanthus(spiny chromis (Palm Islands 2017))(info)GCF_002109545.1

Embiotocidae

Embiotoca

Embiotoca jacksoni

•Embiotoca jacksoni(black perch (LCO1_2020_lvr alternate hap 2022))(info)GCA_022578405.1

•Embiotoca jacksoni(black perch (LCO1_2020_lvr primary hap 2022 refseq))(info)GCF_022577435.1

•Embiotoca jacksoni(black perch (LCO1_2020_lvr primary hap 2022))(info)GCA_022577435.1

Brachyistius

•Brachyistius frenatus(kelp perch (BFR_SWC_R1_liver_20210118 2023))(info)GCF_029030835.1

Ambassidae

Parambassis

Parambassis ranga

•Parambassis ranga(Indian glassy fish (alternate hap 2019))(info)GCA_900651595.1

•Parambassis ranga(Indian glassy fish (v2 2020))(info)GCA_900634625.2

•Parambassis ranga(Indian glassy fish (v1 2019))(info)GCF_900634625.1

•Oreochromis aureus(blue tilapia (BGI-SZ))(info)GCF_005870065.1

•Oreochromis aureus(blue tilapia (Guangdong))(info)GCF_013358895.1

•Oreochromis niloticus(Nile tilapia)(info)GCF_001858045.2

Haplochromini

Haplochromis

Haplochromis burtoni

•Haplochromis burtoni(Burton's mouthbrooder (Broad 2011))(info)GCF_000239415.1

•Haplochromis burtoni(Burton's mouthbrooder (NCSU 2021))(info)GCF_018398535.1

Astatotilapia

Astatotilapia calliptera

•Astatotilapia calliptera(eastern happy (primary hap 2024))(info)GCA_964374335.1

•Astatotilapia calliptera(eastern happy (v3 2021))(info)GCA_900246225.5

•Astatotilapia calliptera(eastern happy (v2 2018))(info)GCF_900246225.1

Aulonocara

•Aulonocara stuartgranti(flavescent peacock cichlid (primary hap 2025))(info)GCA_965226115.1

Rhamphochromis

unclassified Rhamphochromis

•Rhamphochromis sp. 'chilingali'(Malawi cichlid R.sp.'chilingali' (2024))(info)GCA_963969265.1

Pundamilia

•Pundamilia nyererei(P.nyererei 1_Seehausen)(info)GCF_000239375.1

Maylandia

Maylandia zebra complex

Maylandia zebra

•Maylandia zebra(zebra mbuna (Mazinzi reef 2018))(info)GCF_000238955.4

•Maylandia zebra(zebra mbuna (NMK-2024a 2024))(info)GCF_041146795.1

Tropheini

Simochromis

•Simochromis diagramma(chichlid (S. diagramma))(info)GCF_900408965.1

Lamprologini

Neolamprologus

•Neolamprologus brichardi(lyretail cichlid)(info)GCF_000239395.1

Pelmatolapiini

Pelmatolapia

Pelmatolapia mariae

•Pelmatolapia mariae(spotted tilapia (v1 MD_Pm_ZW 2024))(info)GCF_036321145.1

•Pelmatolapia mariae(spotted tilapia (v2 MD_Pm_ZW 2024))(info)GCF_036321145.2

Archocentrus centrarchus

•Archocentrus centrarchus(flier cichlid (alternate hap MPI-CPG 2019))(info)GCA_007364235.1

•Archocentrus centrarchus(flier cichlid (MPI-CPG 2019 refseq))(info)GCF_007364275.1

•Archocentrus centrarchus(flier cichlid (MPI-CPG 2019 genbank))(info)GCA_007364275.2

Amphilophus

•Amphilophus citrinellus(Midas cichlid (2014))(info)GCA_000751415.1

Pholidichthyidae

Pholidichthys

Pholidichthys leucotaenia

•Pholidichthys leucotaenia(convict blenny (fPhoLeu1 alternate hap 2021))(info)GCA_020510965.1

•Pholidichthys leucotaenia(convict blenny (primary hap 2021))(info)GCA_020510985.1

•Gouania willdenowi(blunt-snouted clingfish (alternate hap))(info)GCA_900650505.1

•Gouania willdenowi(blunt-snouted clingfish (v2 2020 genbank))(info)GCA_900634775.2

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 genbank))(info)GCA_900634775.1

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 refseq))(info)GCF_900634775.1

•Blennius ocellaris(butterfly blenny (primary hap 2023))(info)GCA_963422515.1

Salariinae

Salarias

Salarias fasciatus

•Salarias fasciatus(jewelled blenny (2019))(info)GCF_902148845.1

•Salarias fasciatus(jewelled blenny (alternate hap 2019))(info)GCA_902148835.1

Lipophrys

Lipophrys pholis

•Lipophrys pholis(shanny (alternate hap 2023))(info)GCA_963383635.1

•Lipophrys pholis(shanny (primary hap 2023))(info)GCA_963383615.1

Clinidae

Cristiceps

Cristiceps australis

•Cristiceps australis(crested weedfish (hap1 OG76 2025))(info)GCA_049082185.1

•Cristiceps australis(crested weedfish (hap2 OG76 2025))(info)GCA_049082045.1

•Mugil cephalus(flathead mullet)(info)GCF_022458985.1

Chelon

•Chelon labrosus(thicklip grey mullet (primary hap 2023))(info)GCA_963514085.1

•Seriola aureovittata(amberjack S.aureovittata (China HTS-2021-v1 2021))(info)GCF_021018895.1

•Seriola dumerili(greater amberjack)(info)GCF_002260705.1

Seriola lalandi

Seriola lalandi dorsalis

•Seriola lalandi dorsalis(yellowtail amberjack (v2 SW California HSWRI2012SDOR001 2017))(info)GCF_002814215.2

•Seriola lalandi dorsalis(yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017))(info)GCF_002814215.1

Trachurus

Trachurus trachurus

•Trachurus trachurus(Atlantic horse mackerel (alternate hap 2021))(info)GCA_905171655.2

•Trachurus trachurus(Atlantic horse mackerel (primary hap 2021))(info)GCA_905171665.2

Trachinotus

•Trachinotus anak(oyster pompano (Australia AG129_WGS33_773 2025))(info)GCF_046630095.1

Echeneidae

Echeneis

Echeneis naucrates

•Echeneis naucrates(live sharksucker (alternate hap 2019))(info)GCA_900963505.1

•Echeneis naucrates(live sharksucker (v2 2021))(info)GCA_900963305.2

•Echeneis naucrates(live sharksucker (v1 2019))(info)GCF_900963305.1

Hippoglossus hippoglossus

•Hippoglossus hippoglossus(Atlantic halibut (2019 refseq))(info)GCF_009819705.1

•Hippoglossus hippoglossus(Atlantic halibut (alternate hap 2019))(info)GCA_009819745.1

•Hippoglossus hippoglossus(Atlantic halibut (primary hap 2019 genbank))(info)GCA_009819705.1

Hippoglossus stenolepis

•Hippoglossus stenolepis(Pacific halibut (PH-IPHC-18 2020))(info)GCF_013339905.1

•Hippoglossus stenolepis(Pacific halibut (QCI-W04-F060 2022))(info)GCF_022539355.2

Limanda

•Limanda limanda(common dab (primary hap 2023))(info)GCF_963576545.1

Platichthys

Platichthys flesus

•Platichthys flesus(European flounder (alternate hap 2023))(info)GCA_949316195.1

•Platichthys flesus(European flounder (primary hap 2023 genbank))(info)GCA_949316205.1

•Platichthys flesus(European flounder (primary hap 2023 refseq))(info)GCF_949316205.1

Pleuronectes

Pleuronectes platessa

•Pleuronectes platessa(European plaice (alternate hap 2022))(info)GCA_947347695.1

•Pleuronectes platessa(European plaice (primary hap 2022 refseq))(info)GCF_947347685.1

•Pleuronectes platessa(European plaice (primary hap 2022 genbank))(info)GCA_947347685.1

Microstomus

•Microstomus kitt(lemon sole (primary hap 2024))(info)GCA_964266715.1

Scophthalmidae

Scophthalmus

Scophthalmus maximus

•Scophthalmus maximus(Atlantic turbot (AOZZmale01 2020))(info)GCF_013347765.1

•Scophthalmus maximus(turbot (primary hap 2023))(info)GCA_963854745.1

•Scophthalmus maximus(turbot (ysfricsl-2021 2022))(info)GCF_022379125.1

Soleidae

Solea

Solea solea

•Solea solea(common sole (alternate hap 2023))(info)GCA_958295035.1

•Solea solea(common sole (primary hap 2023 refseq))(info)GCF_958295425.1

•Solea solea(common sole (primary hap 2023 genbank))(info)GCA_958295425.1

•Solea senegalensis(Senegalese sole)(info)GCF_019176455.1

Microchirus

•Microchirus variegatus(thickback sole (primary hap 2023))(info)GCA_963457635.1

Paralichthyidae

Paralichthys

Paralichthys olivaceus

•Paralichthys olivaceus(Japanese flounder)(info)GCF_001970005.1

•Paralichthys olivaceus(Japanese flounder (ysfri-2021 2022))(info)GCF_024713975.1

Cynoglossidae

Cynoglossinae

Cynoglossus

•Cynoglossus semilaevis(tongue sole)(info)GCF_000523025.1

Carangaria incertae sedis

Toxotidae

Toxotes

Toxotes jaculatrix

•Toxotes jaculatrix(banded archerfish (alternate hap 2021))(info)GCA_017976295.1

•Toxotes jaculatrix(banded archerfish (primary hap 2021 refseq))(info)GCF_017976425.1

•Toxotes jaculatrix(banded archerfish (primary hap 2021 genbank))(info)GCA_017976425.1

Centropomidae

Lates

Lates calcarifer

•Lates calcarifer(barramundi perch (ASB-BC8 2022))(info)GCF_001640805.2

•Lates calcarifer(barramundi perch (ASB-BC8 2016))(info)GCF_001640805.1

Istiophoriformes

Xiphiidae

Xiphias

•Xiphias gladius(swordfish)(info)GCF_016859285.1

•Thunnus thynnus(Atlantic bluefin tuna (primary hap 2024 genbank))(info)GCA_963924715.1

•Thunnus thynnus(Atlantic bluefin tuna (primary hap 2024 refseq))(info)GCF_963924715.1

•Thunnus orientalis(Pacific bluefin tuna (20180606_amami#17_male 2023))(info)GCA_021601225.2

Thunnus maccoyii

•Thunnus maccoyii(southern bluefin tuna (alternate hap 2021))(info)GCA_910596085.1

•Thunnus maccoyii(southern bluefin tuna (primary hap 2021 refseq))(info)GCF_910596095.1

•Thunnus maccoyii(southern bluefin tuna (primary hap 2021 genbank))(info)GCA_910596095.1

Thunnus albacares

•Thunnus albacares(yellowfin tuna (alternate hap 2021))(info)GCA_914744365.1

•Thunnus albacares(yellowfin tuna (primary hap 2021))(info)GCF_914725855.1

Scombrini

Scomber

Scomber scombrus

•Scomber scombrus(Atlantic mackerel (primary hap 2023 genbank))(info)GCA_963691925.1

•Scomber scombrus(Atlantic mackerel (primary hap 2023 refseq))(info)GCF_963691925.1

Scomber japonicus

•Scomber japonicus(chub mackerel (fScoJap1 alternate hap 2022))(info)GCA_027409835.1

•Scomber japonicus(chub mackerel (primary hap 2022 refseq))(info)GCF_027409825.1

•Scomber japonicus(chub mackerel (primary hap 2022 genbank))(info)GCA_027409825.1

Arripidae

Arripis

Arripis georgiana

•Arripis georgiana(Australian ruff (RE-2024a hap1 2024))(info)GCA_042242115.1

•Arripis georgiana(Australian ruff (RE-2024a hap2 2024))(info)GCA_042242135.1

•Gobius niger(black goby (alternate hap 2023))(info)GCA_951799965.1

•Gobius niger(black goby (primary hap 2023))(info)GCA_951799975.1

Oxudercinae

Boleophthalmus

Boleophthalmus pectinirostris

•Boleophthalmus pectinirostris(great blue-spotted mudskipper (Guang Dong 2022))(info)GCF_026225935.1

•Boleophthalmus pectinirostris(great blue-spotted mudskipper (pooled male+femail 2014 BGI))(info)GCF_000788275.1

Periophthalmus

Periophthalmus magnuspinnatus

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 alternate hap 2020 genbank))(info)GCA_009829135.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1.2 primary hap 2023))(info)GCF_009829125.3

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 genbank))(info)GCA_009829125.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 refseq))(info)GCF_009829125.1

Gobionellinae

Eucyclogobius

Eucyclogobius newberryi

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_F 2022))(info)GCA_026437355.1

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_Fhap1 2022 refseq))(info)GCF_026437365.1

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_F 2022))(info)GCA_026437365.1

Sphaeramia orbicularis

•Sphaeramia orbicularis(orbiculate cardinalfish (2019))(info)GCF_902148855.1

•Sphaeramia orbicularis(orbiculate cardinalfish (alternate hap 2019))(info)GCA_902148825.1

•Anabas testudineus(climbing perch (alternate hap 2019))(info)GCA_900650485.1

•Anabas testudineus(climbing perch (v1.3 2021))(info)GCA_900324465.3

•Anabas testudineus(climbing perch (v1.2 2018 genbank))(info)GCA_900324465.2

•Anabas testudineus(climbing perch (v1.2 2018 refseq))(info)GCF_900324465.2

•Anabas testudineus(climbing perch (v1.1 2018 refseq))(info)GCF_900324465.1

•Betta splendens(Siamese fighting fish (v1 alternate hap 2019))(info)GCA_900651605.1

•Betta splendens(Siamese fighting fish (v4 primary hap 2023))(info)GCF_900634795.4

•Betta splendens(Siamese fighting fish (v5.4 alternate hap 2023))(info)GCA_900651605.2

•Betta splendens(Siamese fighting fish (v2 primary hap 2019))(info)GCF_900634795.2

•Betta splendens(Siamese fighting fish (v3 primary hap 2020))(info)GCF_900634795.3

Channoidei

Channidae

Channa

•Channa argus(northern snakehead (prfri 2023))(info)GCF_033026475.1

•Monopterus albus(swamp eel)(info)GCF_001952655.1

Mastacembeloidei

Mastacembelidae

Mastacembelus

Mastacembelus armatus

•Mastacembelus armatus(zig-zag eel (alternate hap))(info)GCA_900700395.1

•Mastacembelus armatus(zig-zag eel (v1.2 2019 refseq))(info)GCF_900324485.2

•Mastacembelus armatus(zig-zag eel (v1.3 2021 genbank))(info)GCA_900324485.3

•Mastacembelus armatus(zig-zag eel (v1.1 2018))(info)GCF_900324485.1

•Genypterus blacodes(pink cusk-eel (Tasmania CSIRO-AG114 2024))(info)GCF_046128005.1

Thalassophryne amazonica

•Thalassophryne amazonica(prehistoric monster fish (2019 refseq))(info)GCF_902500255.1

•Thalassophryne amazonica(prehistoric monster fish (alternate hap 2019))(info)GCA_902500245.1

•Thalassophryne amazonica(prehistoric monster fish (2019 genbank))(info)GCA_902500255.1

•Centroberyx gerrardi(bight redfish (2022))(info)GCF_026898505.1

•Centroberyx gerrardi(bight redfish (hap1 2025))(info)GCA_048128805.1

•Centroberyx gerrardi(bight redfish (hap2 2025))(info)GCA_048129085.1

•Centroberyx affinis(redfish (Tasmania AG114_WGS23_722 - 3 2025))(info)GCF_046629955.1

Melamphaidae

Poromitra

Poromitra crassiceps

•Poromitra crassiceps(crested bigscale (hap1.1 2025))(info)GCA_964638095.1

•Poromitra crassiceps(crested bigscale (hap2.1 2025))(info)GCA_964638665.1

•Diretmus argenteus(silver spinyfin (hap1 2025))(info)GCA_048569125.1

•Diretmus argenteus(silver spinyfin (hap2 2025))(info)GCA_048569135.1

•Myripristis murdjan(pinecone soldierfish (2019))(info)GCF_902150065.1

•Myripristis murdjan(pinecone soldierfish (alternate hap 2019))(info)GCA_902148815.1

•Gadus morhua(Atlantic cod (2019))(info)GCF_902167405.1

•Gadus morhua(Atlantic cod (alternate hap))(info)GCA_902167395.1

•Gadus macrocephalus(Pacific cod (2023))(info)GCF_031168955.1

•Gadus chalcogrammus(walleye pollock (NIFS_2021 2022))(info)GCF_026213295.1

Micromesistius

•Micromesistius poutassou(blue whiting (primary hap 2024))(info)GCA_964030765.1

Pollachius

Pollachius pollachius

•Pollachius pollachius(pollack (alternate hap 2023))(info)GCA_949987605.1

•Pollachius pollachius(pollack (primary hap 2023))(info)GCA_949987615.1

•Zeus faber(John dory (alternate hap 2023))(info)GCA_960530785.1

•Zeus faber(John dory (primary hap 2023))(info)GCA_960531495.1

•Amblyopsis spelaea(northern cavefish (hap1 2024))(info)GCA_046255685.1

•Amblyopsis spelaea(northern cavefish (hap2 2024))(info)GCA_046255725.1

•Polymixia lowei(beardfish (hap1 2025))(info)GCA_047511565.1

•Polymixia lowei(beardfish (hap2 2025))(info)GCA_047511595.1

Polymixia cf. hollisterae

•Polymixia cf. hollisterae(Bermuda beardfish (OG660 hap1 2025))(info)GCA_048537225.1

•Polymixia cf. hollisterae(Bermuda beardfish (OG660 hap2 2025))(info)GCA_048537235.1

•Lampris incognitus(smalleye Pacific opah (hap1 2023))(info)GCA_029633845.1

•Lampris incognitus(smalleye Pacific opah (hap2 2023 refseq))(info)GCF_029633865.1

•Lampris incognitus(smalleye Pacific opah (hap2 2023 genbank))(info)GCA_029633865.1

•Electrona antarctica(Antarctic lanternfish (alternate hap 2023))(info)GCA_951214905.1

•Electrona antarctica(Antarctic lanternfish (primary hap 2023))(info)GCA_951216825.1

Protomyctophum

•Protomyctophum bolini(Bolin's lanternfish (primary hap 2024))(info)GCA_963924005.1

Protomyctophum parallelum

•Protomyctophum parallelum(parallel lanternfish (alternate hap 2024))(info)GCA_964188415.1

•Protomyctophum parallelum(parallel lanternfish (primary hap 2024))(info)GCA_964188405.1

Gymnoscopelus

Gymnoscopelus braueri

•Gymnoscopelus braueri(Brauer's lanternfish (alternate hap 2023))(info)GCA_963281105.1

•Gymnoscopelus braueri(Brauer's lanternfish (primary hap 2023))(info)GCA_963280865.1

•Gymnoscopelus microlampas(minispotted lanternfish (primary hap 2023))(info)GCA_963454915.1

Nannobrachium

•Nannobrachium achirus(lantern fish (primary hap 2024))(info)GCA_963921795.1

•Notolepis coatsorum(Antarctic jonasfish (primary hap 2024))(info)GCA_963971535.1

•Salvelinus alpinus(Arctic char (2024))(info)GCF_045679555.1

•Salvelinus alpinus oquassa(Arctic char (CBP00131 primary hap 2024))(info)GCA_036784965.1

unclassified Salvelinus

•Salvelinus sp. IW2-2015(Arctic char (IW2-2015 2018))(info)GCF_002910315.2

•Salvelinus fontinalis(brook trout (EN_2023a 2023))(info)GCF_029448725.1

•Salvelinus namaycush(lake trout)(info)GCF_016432855.1

Salmo

Salmo salar

•Salmo salar(Atlantic salmon (refseq 2021))(info)GCF_905237065.1

•Salmo salar(Atlantic salmon (Sally 2015))(info)GCF_000233375.1

•Salmo salar(Atlantic salmon (genbank 2021))(info)GCA_905237065.2

Salmo trutta

•Salmo trutta(river trout (v2 2021))(info)GCA_901001165.2

•Salmo trutta(river trout (v1 2019))(info)GCF_901001165.1

Oncorhynchus

Oncorhynchus masou

•Oncorhynchus masou masou(cherry salmon (Uvic2021 2024))(info)GCF_036934945.1

Oncorhynchus tshawytscha

•Oncorhynchus tshawytscha(Chinook salmon (v1 2018 female))(info)GCF_002872995.1

•Oncorhynchus tshawytscha(Chinook salmon (v2 Ot180627B 2021 male rfseq))(info)GCF_018296145.1

•Oncorhynchus tshawytscha(Chinook salmon (v2 Ot180627B 2021 male genbank))(info)GCA_018296145.1

Oncorhynchus keta

•Oncorhynchus keta(chum salmon (Oke142-1_Chum_Gynogen 2020))(info)GCF_012931545.1

•Oncorhynchus keta(chum salmon (PuntledgeMale-10-30-2019 2022))(info)GCF_023373465.1

Oncorhynchus kisutch

•Oncorhynchus kisutch(coho salmon (150728-3 2019))(info)GCF_002021735.2

•Oncorhynchus kisutch(coho salmon (150728-3 2017))(info)GCF_002021735.1

•Oncorhynchus gorbuscha(pink salmon)(info)GCF_021184085.1

Oncorhynchus mykiss

•Oncorhynchus mykiss(rainbow trout (Arlee))(info)GCF_013265735.2

•Oncorhynchus mykiss(rainbow trout (Swanson))(info)GCF_002163495.1

Oncorhynchus nerka

•Oncorhynchus nerka(sockeye salmon (On170113-E2 v2 2019))(info)GCF_006149115.2

•Oncorhynchus nerka(sockeye salmon (Pitt River 2024))(info)GCF_034236695.1

•Oncorhynchus nerka(sockeye salmon (On170113-E2 v1 2019))(info)GCF_006149115.1

Oncorhynchus clarkii

•Oncorhynchus clarkii lewisi(westslope cutthroat trout (Uvic-CL-2024 2024))(info)GCF_045791955.1

Coregoninae

Coregonus

Coregonus lavaretus

•Coregonus lavaretus(common whitefish (fCorLav1.hap1.1 2024))(info)GCA_964263955.1

•Coregonus lavaretus(common whitefish (fCorLav1.hap2.1 2024))(info)GCA_964263835.1

Coregonus clupeaformis

•Coregonus clupeaformis(lake whitefish (EN20210322 male 2021 Laval U))(info)GCF_018398675.1

•Coregonus clupeaformis(lake whitefish (EN_2021a female 2021 Laval U))(info)GCF_020615455.1

•Argentina silus(greater argentine (alternate hap 2023))(info)GCA_951799415.1

•Argentina silus(greater argentine (primary hap 2023))(info)GCA_951799395.1

Microstomatidae

Nansenia

•Nansenia antarctica(pencil smelt N.antarctica (primary hap 2024))(info)GCA_963989245.1

•Esox lucius(northern pike)(info)GCF_004634155.1

•Esox lucius(northern pike (alternate hap 2020))(info)GCA_011004835.1

•Esox lucius(northern pike (primary hap 2020 refseq))(info)GCF_011004845.1

•Esox lucius(northern pike (primary hap 2020 genbank))(info)GCA_011004845.1

•Aplochiton taeniatus(peladilla (fAplTae1 alternate hap 2021))(info)GCA_017639685.1

•Aplochiton taeniatus(peladilla (primary hap 2021))(info)GCA_017639675.1

•Hypomesus transpacificus(delta smelt)(info)GCF_021917145.1

Osmerinae

Osmerus

Osmerus eperlanus

•Osmerus eperlanus(European smelt (primary hap 2023 genbank))(info)GCA_963692335.1

•Osmerus eperlanus(European smelt (primary hap 2023 refseq))(info)GCF_963692335.1

Osmerus mordax

•Osmerus mordax(rainbow smelt (fOsmMor3 primary hap 2024))(info)GCA_038355195.1

•Osmerus mordax(rainbow smelt (fOsmMor3 primary hap 2024))(info)GCF_038355195.1

Borostomias antarcticus

•Borostomias antarcticus(large-eye snaggletooth (alternate hap 2023))(info)GCA_949987545.1

•Borostomias antarcticus(large-eye snaggletooth (primary hap 2023))(info)GCA_949987555.1

Lepidogalaxias salamandroides

•Lepidogalaxias salamandroides(salamanderfish (hap1 2025))(info)GCA_049190665.1

•Lepidogalaxias salamandroides(salamanderfish (hap2 2025))(info)GCA_049190655.1

•Alosa pseudoharengus(alewife (anadromous, Long Island Sound Yale_2024_CS 2024))(info)GCF_046254945.1

•Alosa alosa(allis shad)(info)GCF_017589495.1

Alosa sapidissima

•Alosa sapidissima(American shad (fAloSap1 alternate hap 2021))(info)GCA_018492705.1

•Alosa sapidissima(American shad (primary hap 2021))(info)GCF_018492685.1

Clupeinae

Clupea

Clupea harengus

•Clupea harengus(Atlantic herring (v2))(info)GCF_900700415.2

•Clupea harengus(Atlantic herring (v1))(info)GCF_900700415.1

Sprattus

•Sprattus sprattus(European sprat (primary hap 2023))(info)GCA_963457725.1

Sardina

Sardina pilchardus

•Sardina pilchardus(sardine (primary hap 2023 genbank))(info)GCA_963854185.1

•Sardina pilchardus(sardine (primary hap 2023 refseq))(info)GCF_963854185.1

Engraulidae

Engraulinae

Engraulis

•Engraulis encrasicolus(European anchovy (BLACKSEA-1 2023))(info)GCF_034702125.1

Coilinae

Coilia

Coilia mystus

•Coilia mystus(Osbeck's grenadier anchovy (Shantou hap1 2025))(info)GCA_048544215.1

•Coilia mystus(Osbeck's grenadier anchovy (Shantou hap2 2025))(info)GCA_048544225.1

•Denticeps clupeoides(denticle herring (alternate hap 2019))(info)GCA_900700345.2

•Denticeps clupeoides(denticle herring (v2 2020))(info)GCA_900700375.2

•Denticeps clupeoides(denticle herring (v1 2019))(info)GCF_900700375.1

Trichomycterus rosablanca

•Trichomycterus rosablanca(Andian cavefish (hap1 2023 genbank))(info)GCA_030014385.1

•Trichomycterus rosablanca(Andian cavefish (hap1 2023 refseq))(info)GCF_030014385.1

•Trichomycterus rosablanca(Rosablanca catfish (hap2 2023))(info)GCA_030015355.1

Callichthyidae

Corydoras

unclassified Corydoras

•Corydoras sp. C115(Corydoras catfish unclassified (C115 2021))(info)GCA_019802505.1

•Silurus aristotelis(Aristotle's catfish (alternate hap 2022))(info)GCA_946807865.1

•Silurus aristotelis(Aristotle's catfish (primary hap 2022))(info)GCA_946808225.1

•Silurus meridionalis(Chinese large-mouth catfish (SWU-2019-XX 2020))(info)GCF_014805685.1

Bagridae

Hemibagrus

•Hemibagrus wyckioides(Asian redtail catfish (EC202008001 2021))(info)GCF_019097595.1

Tachysurus

•Tachysurus vachellii(bony fish T.vachellii (PV-2020 2023))(info)GCF_030014155.1

Tachysurus fulvidraco

•Tachysurus fulvidraco(yellow catfish (hzauxx_2018 2022))(info)GCF_022655615.1

•Tachysurus fulvidraco(yellow catfish (Tf-2017 2018))(info)GCF_003724035.1

Ictaluridae

Ictalurus

•Ictalurus furcatus(blue catfish (D&B 2022))(info)GCF_023375685.1

Ictalurus punctatus

•Ictalurus punctatus(channel catfish (USDA103 2022))(info)GCA_001660625.3

•Ictalurus punctatus(channel catfish (USDA103 v2.0 2022))(info)GCF_001660625.3

•Ictalurus punctatus(channel catfish (USDA103 v1 2016))(info)GCF_001660625.1

•Ictalurus punctatus(channel catfish (USDA103 v1.2 2019))(info)GCF_001660625.2

Ariidae

Neoarius

Neoarius graeffei

•Neoarius graeffei(lesser salmon catfish (fNeoGra1 alternate hap 2023))(info)GCA_027579805.1

•Neoarius graeffei(lesser salmon catfish (primary hap 2023 refseq))(info)GCF_027579695.1

•Neoarius graeffei(lesser salmon catfish (primary hap 2023 genbank))(info)GCA_027579695.1

Clariidae

Clarias

Clarias gariepinus

•Clarias gariepinus(North African catfish (Netherlands MV-2021 2022))(info)GCF_024256425.1

•Clarias gariepinus(North African catfish (Netherlands MV-2021 alternate hap 2022))(info)GCA_024256465.1

•Clarias gariepinus(North African catfish (Netherlands MV-2021 primary hap 2022))(info)GCA_024256435.1

•Clarias magur(walking catfish (CIFAMagur01 2020))(info)GCA_013621035.1

Pangasiidae

Pangasianodon

Pangasianodon hypophthalmus

•Pangasianodon hypophthalmus(striped catfish (fPanHyp1 alternate hap 2022))(info)GCA_027382375.1

•Pangasianodon hypophthalmus(striped catfish (primary hap 2022 refseq))(info)GCF_027358585.1

•Pangasianodon hypophthalmus(striped catfish Indonesia)(info)GCF_009078355.1

•Pangasianodon hypophthalmus(striped catfish Vietnam)(info)GCF_003671635.1

•Pangasianodon hypophthalmus(striped catfish (primary hap 2022 genbank))(info)GCA_027358585.1

•Brachyhypopomus gauderio(banded electric knifefish (BG-103 2025))(info)GCF_052324685.1

Gymnotoidei

Gymnotidae

Electrophorus

Electrophorus electricus

•Electrophorus electricus(electric eel (alternate hap 2020))(info)GCA_013347915.1

•Electrophorus electricus(electric eel (MRS-EE1 2018 U Wisconsin))(info)GCF_003665695.1

•Electrophorus electricus(electric eel (primary hap 2020 refseq))(info)GCF_013358815.1

•Electrophorus electricus(electric eel (QZ-2024a 2024))(info)GCA_041902795.1

•Electrophorus electricus(electric eel (primary hap 2020 genbank))(info)GCA_013358815.1

Salminus brasiliensis

•Salminus brasiliensis(dorado (hap1 2023))(info)GCA_030448965.1

•Salminus brasiliensis(dorado (hap2 2023 refseq))(info)GCF_030463535.1

•Salminus brasiliensis(dorado (hap2 2023 genbank))(info)GCA_030463535.1

•Astyanax mexicanus(Mexican tetra (2017 WashU))(info)GCF_000372685.2

•Astyanax mexicanus(Mexican tetra (ESR-SI-001 2022))(info)GCF_023375975.1

•Astyanax mexicanus(Mexican tetra (Pach_M1 Pachon cave 2021))(info)GCA_019721115.1

Pristellinae

Pristella

•Pristella maxillaris(X-ray tetra P.maxillaris (Tingi 2024))(info)GCA_045781885.1

Serrasalmidae

Pygocentrus

Pygocentrus nattereri

•Pygocentrus nattereri(red-bellied piranha (fPygNat1 alternate hap 2020))(info)GCA_015220065.1

•Pygocentrus nattereri(red-bellied piranha (Pna-1 2016))(info)GCF_001682695.1

•Pygocentrus nattereri(red-bellied piranha (primary hap 2020))(info)GCF_015220715.1

Colossoma

•Colossoma macropomum(tambaqui)(info)GCF_904425465.1

Erythrinidae

Hoplias

Hoplias malabaricus

•Hoplias malabaricus(trahira (v1 hap1 2024 refseq))(info)GCF_029633855.1

•Hoplias malabaricus(trahira (v2 hap1 2024 genbank))(info)GCA_029633855.2

•Hoplias malabaricus(trahira (v2 hap2 2024))(info)GCA_029633875.2

•Hoplias malabaricus(trahira (v1 hap1 2023))(info)GCA_029633855.1

•Hoplias malabaricus(trahira (v1 hap2 2023))(info)GCA_029633875.1

•Gila orcuttii(arroyo chub (AC-1 alternate hap 2022))(info)GCA_026230005.1

•Gila orcuttii(arroyo chub (AC-1 primary hap 2022))(info)GCA_026230025.1

Siphateles

•Siphateles boraxobius(Borax Lake chub (OS27281-9 2025))(info)GCF_051911475.1

Pogonichthyinae

Cyprinella

Cyprinella venusta

•Cyprinella venusta(blacktail shiner (hap1 2024))(info)GCA_038021265.1

•Cyprinella venusta(blacktail shiner (hap2 2024))(info)GCA_038024135.1

Pimephales

•Pimephales promelas(fathead minnow)(info)GCF_016745375.1

Rhinichthys

Rhinichthys klamathensis

•Rhinichthys klamathensis goyatoka(western speckled dace (OS25496 2023))(info)GCF_029890125.1

Leuciscinae

Abramis

•Abramis brama(common bream (primary hap 2024))(info)GCA_963993115.1

Leuciscus

Leuciscus leuciscus

•Leuciscus leuciscus(common dace (hap1.1 2025))(info)GCA_965113295.1

•Leuciscus leuciscus(common dace (hap2.1 2025))(info)GCA_965113325.1

Squalius

Squalius cephalus

•Squalius cephalus(European chub (alternate hap 2023))(info)GCA_949319155.1

•Squalius cephalus(European chub (primary hap 2023))(info)GCA_949319135.1

Rutilus

Rutilus rutilus

•Rutilus rutilus(roach minnow (alternate hap 2023))(info)GCA_951802655.1

•Rutilus rutilus(roach minnow (primary hap 2023))(info)GCA_951802725.1

Scardinius

Scardinius erythrophthalmus

•Scardinius erythrophthalmus(rudd (Europe DD20220513a primary hap 2022))(info)GCA_024453875.1

•Scardinius erythrophthalmus(rudd (fScaEry2.hap1.1 2024))(info)GCA_964197995.1

Phoxininae

Phoxinus

Phoxinus phoxinus

•Phoxinus phoxinus(Eurasian minnow (alternate hap 2023))(info)GCA_949152275.1

•Phoxinus phoxinus(Eurasian minnow (primary hap 2023))(info)GCA_949152265.1

•Barbus barbus(barbel (alternate hap 2022))(info)GCA_936446605.1

•Barbus barbus(barbel (primary hap 2022))(info)GCA_936440315.1

Cyprininae

Cyprinus

Cyprinus carpio

•Cyprinus carpio(common carp (SPL01 2021))(info)GCF_018340385.1

•Cyprinus carpio(common carp (2014))(info)GCF_000951615.1

•Cyprinus carpio carpio(common carp (R8XR3 2021))(info)GCA_905221575.1

Carassius

Carassius carassius

•Carassius carassius(crucian carp (alternate hap 2023))(info)GCA_963082795.1

•Carassius carassius(crucian carp (primary hap 2023 refseq))(info)GCF_963082965.1

•Carassius carassius(crucian carp (primary hap 2023 genbank))(info)GCA_963082965.1

•Carassius auratus(goldfish)(info)GCF_003368295.1

•Carassius gibelio(silver crucian carp (wild population from Czech Republic Cgi1373 2022))(info)GCF_023724105.1

Sinocyclocheilus

•Sinocyclocheilus grahami(golden-line barbel)(info)GCF_001515645.1

•Sinocyclocheilus rhinocerous(horned golden-line barbel)(info)GCF_001515625.1

•Sinocyclocheilus anshuiensis(Southwestern China cavefish)(info)GCF_001515605.1

Labeoninae

Garrini

Garra

•Garra rufa(doctor fish G.rufa (2025))(info)GCF_049309525.1

Labeonini

Labeo

•Labeo rohita(rohu (BAU-BD-2019 2022))(info)GCF_022985175.1

Smiliogastrinae

Puntigrus

•Puntigrus tetrazona(Sumatra barb)(info)GCF_018831695.1

Acrossocheilinae

Onychostoma

•Onychostoma macrolepis(Yangtze koukloug (SWU-2019 2020))(info)GCF_012432095.1

Gobionidae

Sarcocheilichthyinae

Gobiocypris

•Gobiocypris rarus(bony fish G.rarus (2020-XYJJ_v1 2022))(info)GCA_023029165.1

Rhinogobio

•Rhinogobio nasutus(bony fish R.nasutus (DBWJ_T2T 2025))(info)GCA_048301585.1

Pseudorasbora

•Pseudorasbora parva(stone moroko (DD20220531a primary hap 2022))(info)GCF_024679245.1

Gobioninae

Gobio

Gobio gobio

•Gobio gobio(gudgeon (alternate hap 2023))(info)GCA_949357705.1

•Gobio gobio(gudgeon (primary hap 2023))(info)GCA_949357685.1

•Danionella cerebrum(Danionella translucida (Bolton 2019))(info)GCA_007224835.1

•Danionella cerebrum(Danionella translucida (fDanTra1 2020))(info)GCA_903798025.1

Danio

•Danio aesculapii(panther danio (primary hap 2020))(info)GCF_903798145.1

Danio rerio

•Danio rerio(zebrafish (fDanRer4 alternate hap 2022))(info)GCA_944039255.1

•Danio rerio(zebrafish (GRCz12tu Tuebingen 2025))(info)GCF_049306965.1

•Danio rerio(zebrafish (T5D 2021))(info)GCA_018400075.1

•Danio rerio(zebrafish (WGS:CAHPTA01 2020))(info)GCA_903684865.1

•Danio rerio(zebrafish (WGS:CAHPTB02 2020))(info)GCA_903684855.2

•Danio rerio(zebrafish (WGS:CALUEM01 primary hap 2022))(info)GCA_944039275.1

•Danio rerio(zebrafish GRCz11)(info)GCF_000002035.6

Xenocyprididae

Xenocypridinae

Ctenopharyngodon

•Ctenopharyngodon idella(grass carp (HZGC_01 2021))(info)GCF_019924925.1

Chanodichthys

•Chanodichthys erythropterus(predatory carp (Z2021 2022))(info)GCF_024489055.1

Hypophthalmichthys

•Hypophthalmichthys molitrix(silver carp (IHB0807247 2022))(info)GCA_022817975.1

Culter

•Culter alburnus(topmouth culter (CATC2023 2024))(info)GCA_040182925.1

Megalobrama

•Megalobrama amblycephala(Wuchang bream)(info)GCF_018812025.1

Paramisgurnus dabryanus

•Paramisgurnus dabryanus(bony fish P.dabryanus (BB 2023))(info)GCF_030506205.1

•Paramisgurnus dabryanus(pond loach (2024))(info)GCF_030506205.2

Misgurnus

Misgurnus anguillicaudatus

•Misgurnus anguillicaudatus(oriental weatherfish (2024))(info)GCF_027580225.2

•Misgurnus anguillicaudatus(oriental weatherfish (BS_2022a 2023))(info)GCF_027580225.1

Nemacheilidae

Triplophysa

•Triplophysa rosa(Chinese cavefish (2022))(info)GCF_024868665.1

•Triplophysa dalaica(Dalai köbertrulling (WHDGS20190420 2020))(info)GCF_015846415.1

Barbatula

Barbatula barbatula

•Barbatula barbatula(stone loach (alternate hap 2022))(info)GCA_947034905.1

•Barbatula barbatula(stone loach (primary hap 2022))(info)GCA_947034865.1

Catostomoidei

Catostomidae

Myxocyprinus

•Myxocyprinus asiaticus(Chinese sucker (Aquarium Trade MX2 2022))(info)GCF_019703515.2

Xyrauchen

•Xyrauchen texanus(razorback sucker (HMW12.3.18 2022))(info)GCF_025860055.1

•Chanos chanos(milkfish (2019))(info)GCF_902362185.1

•Chanos chanos(milkfish (alternate hap 2019))(info)GCA_902362175.1

•Scleropages formosus(Asian bonytongue (2019))(info)GCF_900964775.1

•Scleropages formosus(Asian bonytongue (alternate hap))(info)GCA_900964985.2

Mormyridae

Brienomyrus

•Brienomyrus brachyistius(elephant fish B.brachyistius (T26 2022))(info)GCF_023856365.1

Paramormyrops

Paramormyrops kingsleyae

•Paramormyrops kingsleyae(mormyrid electric fish (MSU_618 2025))(info)GCF_048594095.1

•Paramormyrops kingsleyae(Old Calabar mormyrid (PKING1 2018))(info)GCF_002872115.1

•Conger conger(European conger (primary hap 2023 refseq))(info)GCF_963514075.1

•Conger conger(European conger (primary hap 2023 genbank))(info)GCA_963514075.1

Anguillidae

Anguilla

•Anguilla rostrata(American eel (EN2019 2024))(info)GCF_018555375.3

Anguilla anguilla

•Anguilla anguilla(European eel (alternate hap 2020))(info)GCA_013347865.1

•Anguilla anguilla(European eel (primary hap 2020 refseq))(info)GCF_013347855.1

•Anguilla anguilla(European eel (primary hap 2020 genbank))(info)GCA_013347855.1

•Anguilla japonica(Japanese eel (BU-2020EF 2022))(info)GCA_025169545.1

•Megalops cyprinoides(Indo-Pacific tarpon (2020))(info)GCF_013368585.1

•Megalops cyprinoides(Indo-Pacific tarpon (alternate hap 2020))(info)GCA_013368575.1

•Amia calva(bowfin (hap1 2024 refseq))(info)GCF_036373705.1

•Amia calva(bowfin (hap2 2024))(info)GCA_036365475.1

•Amia ocellicauda(bowfin (hap1 2024 genbank))(info)GCA_036373705.1

•Lepisosteus oculatus(spotted gar)(info)GCF_000242695.1

•Lepisosteus oculatus(spotted gar (fLepOcu1hap1 2024))(info)GCA_040954845.1

•Lepisosteus oculatus(spotted gar (fLepOcu1hap2 2024))(info)GCF_040954835.1

•Acipenser ruthenus(sterlet (maternal hap 2022 refseq))(info)GCF_902713425.1

•Acipenser ruthenus(sterlet (v2 paternal hap 2022))(info)GCA_902713435.2

•Acipenser ruthenus(sterlet (v2 Gen_M01 2020))(info)GCF_010645085.2

•Acipenser ruthenus(sterlet (maternal hap 2022 genbank))(info)GCA_902713425.1

•Acipenser ruthenus(sterlet (v1 paternal hap 2020))(info)GCA_902713435.1

•Acipenser ruthenus(sterlet (maternal hap 2022 genbank))(info)GCA_902713425.2

•Acipenser ruthenus(sterlet (v1 Gen_M01 2020))(info)GCF_010645085.1

Husinae

Huso

•Huso huso(beluga (Lower Danube River Hh-F2 2024))(info)GCA_036884735.1

•Polyodon spathula(Mississippi paddlefish)(info)GCF_017654505.1

Erpetoichthys calabaricus

•Erpetoichthys calabaricus(reedfish (2021))(info)GCF_900747795.2

•Erpetoichthys calabaricus(reedfish (v1 alternate hap 2019))(info)GCA_900700845.2

•Erpetoichthys calabaricus(reedfish (v3 alternate hap 2021))(info)GCA_900700845.3

•Erpetoichthys calabaricus(reedfish (2019))(info)GCF_900747795.1

Polypterus

•Polypterus senegalus(gray bichir)(info)GCF_016835505.1

•Hypanus sabinus(Atlantic stingray (hap1 2023 refseq))(info)GCF_030144855.1

•Hypanus sabinus(Atlantic stingray (hap2 2023))(info)GCA_030144785.1

•Hypanus sabinus(Atlantic stingray (hap1 2023 genbank))(info)GCA_030144855.1

Hemitrygon

•Hemitrygon akajei(red stingray (2025))(info)GCF_048418815.1

•Mobula birostris(giant manta (hap1 2023 refseq))(info)GCF_030028105.1

•Mobula birostris(giant manta (hap2 2023))(info)GCA_030035685.1

•Mobula birostris(giant manta (hap1 2023 genbank))(info)GCA_030028105.1

•Mobula hypostoma(lesser devil ray (2024))(info)GCF_963921235.1

Rajiformes

Rajidae

Raja

•Raja brachyura(blonde ray (primary hap 2023))(info)GCA_963514005.1

Leucoraja

•Leucoraja erinaceus(little skate (New England 2023))(info)GCF_028641065.1

Amblyraja

Amblyraja radiata

•Amblyraja radiata(thorny skate (alternate hap CabotCenter1 2020))(info)GCA_010909745.1

•Amblyraja radiata(thorny skate (v1.1 primary hap CabotCenter1 2020))(info)GCF_010909765.2

•Amblyraja radiata(thorny skate (v1 primary hap CabotCenter1 2020 genbank))(info)GCA_010909765.1

•Amblyraja radiata(thorny skate (v1 CabotCenter1 v1 2020 refseq))(info)GCF_010909765.1

•Narcine bancroftii(Caribbean electric ray (hap1 2024 refseq))(info)GCF_036971445.1

•Narcine bancroftii(Caribbean electric ray (hap2 2024))(info)GCA_036971175.1

•Narcine bancroftii(Caribbean electric ray (hap1 2024 genbank))(info)GCA_036971445.1

•Pristis pectinata(smalltooth sawfish (alternate hap 2019))(info)GCA_009764485.1

•Pristis pectinata(smalltooth sawfish (v2.1 primary hap 2019 refseq))(info)GCF_009764475.1

•Pristis pectinata(smalltooth sawfish (v2 primary hap 2019 genbank))(info)GCA_009764475.1

•Cetorhinus maximus(basking shark (sCetMax3.hap1.1 2024))(info)GCA_964194155.1

•Cetorhinus maximus(basking shark (sCetMax3.hap2.1 2024))(info)GCA_964194165.1

Lamninae

Carcharodon

Carcharodon carcharias

•Carcharodon carcharias(great white shark (alternate hap 2021))(info)GCA_017639455.1

•Carcharodon carcharias(great white shark (primary hap 2021))(info)GCF_017639515.1

Orectolobiformes

Hemiscylliidae

Chiloscyllium

•Chiloscyllium punctatum(brownbanded bambooshark (Juve2018m 2025))(info)GCF_047496795.1

Chiloscyllium plagiosum

•Chiloscyllium plagiosum(whitespotted bambooshark)(info)GCF_004010195.1

•Chiloscyllium plagiosum(whitespotted bambooshark (BGI_BamShark_2017 2019))(info)GCA_004010195.1

Hemiscyllium

Hemiscyllium ocellatum

•Hemiscyllium ocellatum(epaulette shark (alternate hap sHemOce1 2021))(info)GCA_020745765.1

•Hemiscyllium ocellatum(epaulette shark (primary hap 2021 refseq))(info)GCF_020745735.1

•Hemiscyllium ocellatum(epaulette shark (2021 genbank))(info)GCA_020745735.1

Rhincodontidae

Rhincodon

Rhincodon typus

•Rhincodon typus(whale shark (14 2022 Squalomix))(info)GCF_021869965.1

•Rhincodon typus(whale shark (Ralph 2017 Emory U))(info)GCF_001642345.1

Stegostomatidae

Stegostoma

Stegostoma tigrinum

•Stegostoma tigrinum(zebra shark (6-17 2022 Squalomix))(info)GCF_022316705.1

•Stegostoma tigrinum(zebra shark (hap1 2023 refseq))(info)GCF_030684315.1

•Stegostoma tigrinum(zebra shark (hap2 2023))(info)GCA_030684295.1

•Stegostoma tigrinum(zebra shark (hap1 2023 genbank))(info)GCA_030684315.1

Carcharhiniformes

Scyliorhinidae

Scyliorhinus

•Scyliorhinus torazame(cloudy catshark (Kashiwa2021f 2025))(info)GCF_047496885.1

Scyliorhinus canicula

•Scyliorhinus canicula(smaller spotted catshark (alternate hap 2021))(info)GCA_902713625.2

•Scyliorhinus canicula(smaller spotted catshark (v1.2 primary hap 2021 genbank))(info)GCA_902713615.2

•Scyliorhinus canicula(smaller spotted catshark (v1.1 primary hap 2020 refseq))(info)GCF_902713615.1

Triakidae

Mustelus

Mustelus asterias

•Mustelus asterias(starry smooth-hound (sMusAst1.hap1.1 2024))(info)GCA_964213995.1

•Mustelus asterias(starry smooth-hound (sMusAst1.hap2.1 2024))(info)GCA_964214025.1

Heterodontus francisci

•Heterodontus francisci(horn shark (hap1 2024))(info)GCA_036365525.1

•Heterodontus francisci(horn shark (hap2 2024))(info)GCA_036365495.1

•Heterodontus francisci(horn shark (sHetFra1hap1 2024))(info)GCF_036365525.1

•Somniosus microcephalus(Greenland sleeper shark (GS21.2 2025))(info)GCA_052327205.1

Pristiophoriformes

Pristiophoridae

Pristiophorus

Pristiophorus japonicus

•Pristiophorus japonicus(Japanese sawshark (hap1 2024 refseq))(info)GCF_044704955.1

•Pristiophorus japonicus(Japanese sawshark (hap2 2024))(info)GCA_044704965.1

•Pristiophorus japonicus(Japanese sawshark (hap1 2024 genbank))(info)GCA_044704955.1

•Heptranchias perlo(sharpnose sevengill shark (hap1 2024 genbank))(info)GCF_035084215.1

•Heptranchias perlo(sharpnose sevengill shark (hap1 2024 refseq))(info)GCA_035084215.1

•Heptranchias perlo(sharpnose sevengill shark (hap2 2024))(info)GCA_035084135.1

•Callorhinchus milii(elephant shark (2021))(info)GCF_018977255.1

•Callorhinchus milii(elephant shark (2013))(info)GCF_000165045.1

Chimaeridae

Hydrolagus

Hydrolagus colliei

•Hydrolagus colliei(spotted ratfish (hap1 2024))(info)GCA_035084065.1

•Hydrolagus colliei(spotted ratfish (hap2 2024))(info)GCA_035084275.1

•Lethenteron camtschaticum(Arctic lamprey (IMCB_JLM_01 2021))(info)GCA_018977245.1

•Lethenteron reissneri(Far Eastern brook lamprey (LAM-NWPU_2019-01 2020))(info)GCF_015708825.1

Lampetra

•Lampetra fluviatilis(European river lamprey (primary hap 2024))(info)GCA_964198595.1

Entosphenus

•Entosphenus tridentatus(Pacific lamprey (Columbia River large-bodied, stream-maturing ecotype CRITFC18_GStd-0006 2020))(info)GCA_014621495.2

Petromyzon

Petromyzon marinus

•Petromyzon marinus(sea lamprey (alternate hap 2020))(info)GCA_010993595.1

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 alternate hap 2025))(info)GCA_048941845.1

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025 genbank))(info)GCA_048934315.1

•Petromyzon marinus(sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025 refseq))(info)GCF_048934315.1

•Petromyzon marinus(sea lamprey (primary hap 2020))(info)GCF_010993605.1

•Petromyzon marinus(sea lamprey (kPetMar1 primary hap 2020))(info)GCA_010993605.1

•Myxine glutinosa(Atlantic hagfish (MG_SS 2024))(info)GCF_040869285.1

•Myxine glutinosa(Atlantic hagfish (primary hap 2024))(info)GCA_964187855.1

Branchiostoma lanceolatum

•Branchiostoma lanceolatum(amphioxus (2018))(info)GCA_900088365.1

•Branchiostoma lanceolatum(European lancelet (hap1 2024))(info)GCA_035149815.1

•Branchiostoma lanceolatum(European lancelet (hap1.1 2024))(info)GCA_964187965.1

•Branchiostoma lanceolatum(European lancelet (hap2 2024 refseq))(info)GCF_035083965.1

•Branchiostoma lanceolatum(amphioxus (hap2 2024 genbank))(info)GCA_035083965.1

•Branchiostoma floridae x Branchiostoma belcheri(Belcher's lancelet (bbbf 2021))(info)GCA_019207075.1

•Branchiostoma belcheri(Belcher's lancelet (outbred BF01 2016))(info)GCF_001625305.1

•Branchiostoma floridae x Branchiostoma japonicum(Florida amphioxus (bjbf hap2 2020))(info)GCA_015852565.1

•Branchiostoma floridae(Florida lancelet (S238N-H82 2020))(info)GCF_000003815.2

Asymmetron

•Asymmetron lucayanum(lancelets A.lucayanum (AD20110701 2016))(info)GCA_001663935.1

•Styela clava(clubbed tunicate S.clava (hap1.2 2025))(info)GCF_964204865.1

•Styela clava(stalked seq squirt)(info)GCF_013122585.1

•Styela clava(tunicate S.clava (kaStyClav1.hap1.1 2024))(info)GCA_964204865.1

•Styela clava(tunicate S.clava (kaStyClav1.hap2.1 2024))(info)GCA_964204955.1

Botryllus

•Botryllus schlosseri(tunicate B.schlosseri (356a 2013))(info)GCA_000444245.1

Pyuridae

Halocynthia

•Halocynthia aurantium(tunicate H.aurantium (Mutsu-Bay-2010 2020))(info)GCA_013436065.1

•Halocynthia roretzi(tunicate H.roretzi (Mutsu-Bay-2010 2020))(info)GCA_013436055.1

Aplousobranchia

Clavelinidae

Clavelina

Clavelina lepadiformis

•Clavelina lepadiformis(light-bulb sea squirt (primary hap 2022 genbank))(info)GCA_947623445.1

•Clavelina lepadiformis(light-bulb sea squirt (primary hap 2022 refseq))(info)GCF_947623445.1

Polyclinidae

Aplidium

•Aplidium turbinatum(tunicate A.turbinatum (primary hap 2021))(info)GCA_918807975.1

Didemnidae

Trididemnum

•Trididemnum clinides(tunicate T.clinides (primary hap 2023))(info)GCA_963675345.1

•Corella eumyota(orange-tipped seq squirt (alternate hap 2023))(info)GCA_963082865.1

•Corella eumyota(orange-tipped seq squirt (primary hap 2023))(info)GCA_963082875.1

Ascidiidae

Ascidia

•Ascidia mentula(pink sea squirt (2022))(info)GCA_947561715.1

Ascidiella

•Ascidiella aspersa(tunicate A.aspersa (primary hap 2024))(info)GCA_963924565.1

Phallusia

•Phallusia mammillata(warty sea squirt (Sete-AP-2010 2018))(info)GCA_003260075.1

Cionidae

Ciona

•Ciona intestinalis(vase tunicate C.intestinalis (2013))(info)GCF_000224145.3

•Bathochordaeus stygius(tunicate B.stygius (SS-2019 2019))(info)GCA_004367955.1

Mesochordaeus

•Mesochordaeus erythrocephalus(tunicate M.erythrocephalus (Monterey-2011 2019))(info)GCA_004367975.1

Oikopleura

•Oikopleura albicans(tunicate O.albicans (PointB-2012 2019))(info)GCA_004367875.1

•Oikopleura dioica(tunicate O.dioica (2010))(info)GCA_000209555.1

•Oikopleura longicauda(tunicate O.longicauda (LaJolla-2011 2019))(info)GCA_004367895.1

•Oikopleura vanhoeffeni(tunicate O.vanhoeffeni (WitlessB-2012 2019))(info)GCA_004367855.1

Fritillariidae

Fritillaria

•Fritillaria borealis(tunicate F.borealis (Espegrend-2014 2019))(info)GCA_004368075.1

•Thalia democratica(tunicate T.democratica (hap1.1 2025))(info)GCA_965202585.1

•Thalia democratica(tunicate T.democratica (hap2.1 2025))(info)GCA_965202575.1

unclassified Saccoglossus

Saccoglossus sp. HW-2024a

•Saccoglossus sp. HW-2024a(acorn worm (v2 HW-2024a hap1 2025))(info)GCA_040954625.2

•Saccoglossus sp. HW-2024a(acorn worm (v2 HW-2024a hap2 2025))(info)GCA_040954595.2

•Saccoglossus sp. HW-2024a(hemichordates Saccoglossus HW-2024a (v1 hap2 2024))(info)GCA_040954595.1

•Saccoglossus sp. HW-2024a(hemichordates Saccoglossus HW-2024a (v1 hap1 2024))(info)GCA_040954625.1

Saccoglossus kowalevskii

•Saccoglossus kowalevskii(hemichordates S.kowalevskii (v1.1 2009))(info)GCF_000003605.2

•Saccoglossus kowalevskii(hemichordates S.kowalevskii (v1.2 2009))(info)GCF_000003605.3

Spengelidae

Glandiceps

•Glandiceps talaboti(hemichordates G.talaboti (2024))(info)GCF_964340395.1

Ptychoderidae

Ptychodera

•Ptychodera flava(hemichordates P.flava (L36383 2024))(info)GCF_041260155.1

•Patiria miniata(bat star)(info)GCF_015706575.1

Acanthasteridae

Acanthaster

•Acanthaster planci(crown-of-thorns starfish)(info)GCF_001949145.1

•Asterias rubens(European starfish (2020))(info)GCF_902459465.1

•Asterias rubens(European starfish (alternate hap 2019))(info)GCA_902459445.1

•Asterias amurensis(starfish (2023))(info)GCF_032118995.1

Pisaster

Pisaster brevispinus

•Pisaster brevispinus(starfish (M0D059179O alternate hap 2022))(info)GCA_023634265.1

•Pisaster brevispinus(starfish (M0D059179O primary hap 2022))(info)GCA_023634235.1

•Amphiura filiformis(brittle stars A.filiformis (2024))(info)GCF_039555335.1

•Lytechinus variegatus(green sea urchin)(info)GCF_018143015.1

Lytechinus pictus

•Lytechinus pictus(painted urchin (DCL-2020 2023))(info)GCF_015342785.2

•Lytechinus pictus(painted urchin (F3 Inbred 2024))(info)GCF_037042905.1

•Strongylocentrotus purpuratus(purple sea urchin)(info)GCF_000002235.5

Echinometridae

Heliocidaris

•Heliocidaris tuberculata(red sea urchin (PLD820 2022))(info)GCA_025618425.1

•Heliocidaris erythrogramma(shortspined sea urchin (PLD85 2022))(info)GCA_025617745.1

•Diadema antillarum(sea urchins D.antillarum (AM-2024a 2024))(info)GCF_040938485.1

•Diadema setosum(sea urchins D.setosum (2024))(info)GCF_964275005.1

•Apostichopus japonicus(Japanese sea cucumber (1M-3 2024))(info)GCF_037975245.1

•Apostichopus parvimensis(sea cucumbers A.parvimensis (Sea Cucumber 01 2015))(info)GCA_000934455.1

•Anneissia japonica(crinoids A.japonica)(info)GCF_011630105.1

Antedonidae

Antedon

•Antedon mediterranea(crinoids A.mediterranea (2024))(info)GCF_964355755.1

•Lysandra bellargus(Adonis blue)(info)GCA_905333045.1

Aricia

Aricia agestis

•Aricia agestis(brown argus butterfly (refseq 2021))(info)GCF_905147365.1

•Aricia agestis(brown argus (genbank 2021))(info)GCA_905147365.1

Cyaniris

•Cyaniris semiargus(butterfly C.semiargus)(info)GCA_905187585.1

Plebejus

•Plebejus argus(butterfly P.argus)(info)GCA_905404155.1

Glaucopsyche

•Glaucopsyche alexis(green-underside blue)(info)GCA_905404095.1

Celastrina

•Celastrina argiolus(holly blue)(info)GCA_905187575.1

Lycaeninae

Lycaena

•Lycaena phlaeas(common copper)(info)GCA_905333005.1

Helleia

•Helleia helle(violet copper butterfly (2023))(info)GCA_963853865.1

•Papilio xuthus(Asian swallowtail (v2 2015))(info)GCF_000836235.2

•Papilio xuthus(Asian swallowtail (v1 2015))(info)GCF_000836235.1

•Papilio polytes(common Mormon)(info)GCF_000836215.1

Papilio machaon

•Papilio machaon(common yellow swallowtail (Sanger 2021))(info)GCF_912999745.1

•Papilio machaon(common yellow swallowtail (ya'a_city_454_Pm BGI 2015))(info)GCF_001298355.1

Troidini

Battus

•Battus philenor(pipe-vine swallowtail (CCGP_79_NKW_IND1hap1 2023))(info)GCF_028537555.1

•Nymphalis polychloros(blackleg tortoiseshell)(info)GCA_905220585.1

Aglais

Nymphalis io

•Nymphalis io(European peacock (2021 refseq))(info)GCF_905147045.1

•Nymphalis io(European peacock (2021 genbank))(info)GCA_905147045.1

•Nymphalis urticae(small tortoiseshell)(info)GCA_905147175.1

Vanessa

Vanessa tameamea

•Vanessa tameamea(butterfly V.tameamea)(info)GCF_002938995.1

•Vanessa tameamea(fly V.tameamea (UH-Manoa-2023 primary hap 2024))(info)GCF_037043105.1

Vanessa cardui

•Vanessa cardui(painted lady (refseq 2021))(info)GCF_905220365.1

•Vanessa cardui(painted lady (genbank 2021))(info)GCA_905220365.1

Vanessa atalanta

•Vanessa atalanta(red admiral (refseq 2021))(info)GCF_905147765.1

•Vanessa atalanta(red admiral (genbank 2021))(info)GCA_905147765.2

•Melitaea athalia(butterfly M.athalia)(info)GCA_905220545.1

Melitaea cinxia

•Melitaea cinxia(Glanville fritillary (refseq 2021))(info)GCF_905220565.1

•Melitaea cinxia(Glanville fritillary (genbank 2021))(info)GCA_905220565.1

•Coenonympha glycerion(butterfly C.glycerion (2023))(info)GCA_963855885.1

Maniolina

Maniola

jurtina species complex

Maniola jurtina

•Maniola jurtina(meadow brown (refseq 2021))(info)GCF_905333055.1

•Maniola jurtina(meadow brown (genbank 2021))(info)GCA_905333055.1

Aphantopus

Maniola hyperantus

•Maniola hyperantus(ringlet)(info)GCF_902806685.1

•Maniola hyperantus(ringlet (primary hap 2024))(info)GCF_902806685.2

Parargina

Pararge

Pararge aegeria

•Pararge aegeria(speckled wood butterfly (refseq 2021))(info)GCF_905163445.1

•Pararge aegeria(speckled wood butterfly (genbank 2021))(info)GCA_905163445.1

Mycalesina

Bicyclus

Bicyclus anynana

•Bicyclus anynana(squinting bush brown)(info)GCF_900239965.1

•Bicyclus anynana(squinting bush brown (primary hap 2022))(info)GCF_947172395.1

Heliconiinae

Heliconiini

Eueides

•Eueides isabella(butterfly E.isabella)(info)GCA_019049475.1

Dione

Agraulis

•Dione vanillae(Gulf fritillary (Individual-Florida1 2024))(info)GCA_037178615.1

Dryas

Dryas iulia

•Dryas iulia moderata(julia butterfly)(info)GCA_019049465.1

Heliconius

Heliconius melpomene

•Heliconius melpomene aglaope(postman butterfly (2015))(info)GCA_001485885.1

•Heliconius sara(Sara longwing butterfly (2021))(info)GCA_917862395.1

•Heliconius charithonia(zebra longwing (UCI2018-2 2023))(info)GCA_030704555.1

Argynnini

Fabriciana

•Fabriciana adippe(high brown fritillary)(info)GCA_905404265.1

Boloria

Clossiana

•Boloria selene(silver meadow fritillary)(info)GCA_905231865.2

Limenitidinae

Limenitidini

Limenitis

•Limenitis camilla(butterfly L.camilla)(info)GCA_905147385.1

•Danaus plexippus(monarch butterfly (2021))(info)GCF_018135715.1

•Danaus plexippus plexippus(monarch butterfly)(info)GCF_009731565.1

•Leptidea sinapis(butterfly L.sinapis (2021 refseq))(info)GCF_905404315.1

•Leptidea sinapis(butterfly L.sinapis (2021 genbank))(info)GCA_905404315.1

•Pieris napi(butterfly P.napi (v1.2 refseq 2022))(info)GCF_905475465.1

•Pieris napi(butterfly P.napi (v1.1 genbank 2021))(info)GCA_905475465.1

Pieris rapae

•Pieris rapae(cabbage white)(info)GCF_001856805.1

•Pieris rapae(cabbage white (refseq 2021))(info)GCF_905147795.1

•Pieris rapae(cabbage white (genbank 2021))(info)GCA_905147795.1

Pieris brassicae

•Pieris brassicae(large cabbage white (refseq 2021))(info)GCF_905147105.1

•Pieris brassicae(large cabbage white (genbank 2021))(info)GCA_905147105.1

Anthocharis

•Anthocharis cardamines(orange tip (primary hap 2021))(info)GCA_905404175.1

Coliadinae

Colias

Colias croceus

•Colias croceus(clouded yellow (refseq 2021))(info)GCF_905220415.1

•Colias croceus(clouded yellow (genbank 2021))(info)GCA_905220415.1

Zerene

•Zerene cesonia(dogface butterfly)(info)GCF_012273895.1

•Ostrinia furnacalis(Asian corn borer (v3 ACB-3 2019))(info)GCF_004193835.3

•Ostrinia furnacalis(Asian corn borer (v1 ACB-3 2019))(info)GCF_004193835.1

•Ostrinia furnacalis(Asian corn borer (v2 ACB-3 2019))(info)GCF_004193835.2

•Ostrinia nubilalis(European corn borer (primary hap 2023))(info)GCF_963855985.1

Marasmia

•Marasmia exigua(moth C.exigua)(info)GCA_019059595.1

Cnaphalocrocis

•Cnaphalocrocis medinalis(rice leaffolder (RLF-ZJU 2020))(info)GCA_014851415.1

Crambinae

Chrysoteuchia

•Chrysoteuchia culmella(moth C.culmella)(info)GCA_910589605.1

Chilo

•Chilo suppressalis(striped riceborer (HZU2018 2019))(info)GCA_004000445.1

Spilomelinae

Leucinodes

•Leucinodes orbonalis(moth L.orbonalis (L1 B-IND-2017 2021))(info)GCA_019425675.1

Nymphulinae

Parapoynx

•Parapoynx stratiotata(moth P.stratiotata)(info)GCA_910589355.1

•Galleria mellonella(greater wax moth (Carbio01_MB 2019 refseq))(info)GCF_003640425.2

•Galleria mellonella(greater wax moth (primary hap 2023))(info)GCA_958496185.1

•Galleria mellonella(greater wax moth (WM207_F2 2022))(info)GCF_026898425.1

•Galleria mellonella(greater wax moth (Carbio01_MB 2019 genbank))(info)GCA_003640425.2

Achroia

•Achroia grisella(lesser wax moth (CSIRO2021 2023))(info)GCF_030625045.1

Corcyra

•Corcyra cephalonica(rice moth (NJ 2024))(info)GCA_040436485.1

Phycitinae

Plodia

Plodia interpunctella

•Plodia interpunctella(Indianmeal moth (v2 USDA-ARS_2022_Savannah primary hap 2024))(info)GCF_027563975.2

•Plodia interpunctella(Indianmeal moth (v1 USDA-ARS_2022_Savannah primary hap 2023))(info)GCF_027563975.1

Amyelois

Amyelois transitella

•Amyelois transitella(moth A.transitella)(info)GCF_001186105.1

•Amyelois transitella(moth A.transitella (CPQ primary hap 2023))(info)GCF_032362555.1

Pyralinae

Endotricha

•Endotricha flammealis(moth E.flammealis)(info)GCA_905163395.1

•Spodoptera exigua(beet armyworm)(info)GCA_011316535.1

Spodoptera frugiperda

•Spodoptera frugiperda(fall armyworm (Faw-zju v1.1 refseq 2020))(info)GCF_011064685.2

•Spodoptera frugiperda(fall armyworm (SF20-4 2022))(info)GCF_023101765.2

•Spodoptera frugiperda(fall armyworm (sfC_20170901_p 2023))(info)GCA_019297735.2

•Spodoptera frugiperda(fall armyworm (Faw-zju 2020 genbank))(info)GCA_011064685.1

•Spodoptera frugiperda(fall armyworm (Faw-zju v1.0 refseq 2020))(info)GCF_011064685.1

Spodoptera litura

•Spodoptera litura(moth S.litura (Ishihara v3 2017))(info)GCF_002706865.2

•Spodoptera litura(moth S.litura (Ishihara v1 2017))(info)GCF_002706865.1

•Spodoptera picta(moth S.picta (LS_pupa_1 2024))(info)GCA_038387885.1

Amphipyra

•Amphipyra berbera(moth A.berbera)(info)GCA_910594945.1

•Amphipyra tragopoginis(moth A.tragopoginis)(info)GCA_905220435.1

Plusiinae

Trichoplusia

Trichoplusia ni

•Trichoplusia ni(cabbage looper)(info)GCF_003590095.1

•Trichoplusia ni(cabbage looper (Cornell-1 2018))(info)GCA_003604225.1

Autographa

•Autographa pulchrina(moth A.pulchrina)(info)GCA_905475315.1

•Autographa gamma(silver Y moth)(info)GCA_905146925.1

Abrostola

•Abrostola tripartita(moth A.tripartita)(info)GCA_905340225.1

Noctuinae

Hadenini

Mamestra

•Mamestra brassicae(cabbage moth)(info)GCA_905163435.1

Hecatera

•Hecatera dysodea(moth H.dysodea)(info)GCA_905332915.1

Mythimna

•Mythimna ferrago(moth M.ferrago)(info)GCA_910589285.1

•Mythimna impura(moth M.impura)(info)GCA_905147345.1

•Mythimna separata(northern armyworm (1_D07 2023))(info)GCA_030763345.1

Phlogophora

•Phlogophora meticulosa(moth P.meticulosa)(info)GCA_905147745.1

Noctuini

Noctua

•Noctua pronuba(large yellow underwing)(info)GCA_905220335.1

•Noctua fimbriata(moth N.fimbriata)(info)GCA_905163415.1

•Noctua janthe(moth N.janthe)(info)GCA_910589295.1

Ochropleura

•Ochropleura plecta(moth O.plecta)(info)GCA_905475445.1

Xestia

•Xestia xanthographa(moth X.xanthographa)(info)GCA_905147715.2

Heliothinae

Helicoverpa

Helicoverpa zea

•Helicoverpa zea(corn earworm (GA-R 2022))(info)GCA_022343045.1

•Helicoverpa zea(corn earworm (HzStark_Cry1AcR 2022))(info)GCF_022581195.2

Helicoverpa armigera

•Helicoverpa armigera(cotton bollworm (CAAS_96S 2023))(info)GCF_030705265.1

•Helicoverpa armigera(cotton bollworm (Harm_GR_Male_#8 2017 refseq))(info)GCF_002156985.1

•Helicoverpa armigera(cotton bollworm (SCD 2022))(info)GCF_023701775.1

•Helicoverpa armigera(cotton bollworm (Harm_GR_Male_#8 2017 genbank))(info)GCA_002156985.1

Ipimorphinae

Cosmia

•Cosmia trapezina(dun-bar pinion)(info)GCA_905163495.1

Acronictinae

Acronicta

•Acronicta aceris(moth A.aceris)(info)GCA_910591435.1

Craniophora

•Craniophora ligustri(moth C.ligustri)(info)GCA_905163465.1

Xyleninae

Atethmia

•Atethmia centrago(moth A.centrago)(info)GCA_905333075.2

Erebidae

Lymantriinae

Lymantria

•Lymantria monacha(black-arched tussock moth)(info)GCA_905163515.1

Euproctis

•Euproctis similis(moth E.similis)(info)GCA_905147225.1

Hypeninae

Hypena

•Hypena proboscidalis(moth H.proboscidalis)(info)GCA_905147285.1

Schrankia

•Schrankia costaestrigalis(pinion-streaked snout moth)(info)GCA_905475405.1

Boletobiinae

Laspeyria

•Laspeyria flexula(moth L.flexula)(info)GCA_905147015.1

Arctiinae

Spilosomini

Spilosoma

•Spilosoma lubricipeda(moth S.lubricipeda)(info)GCA_905220595.1

Erebinae

Anticarsia

•Anticarsia gemmatalis(velvetbean caterpillar (Stoneville strain Benzon Research Colony primary hap 2025))(info)GCF_050436995.1

Notodontidae

Pygaerinae

Clostera

•Clostera curtula(moth C.curtula)(info)GCA_905475355.1

Notodontinae

Notodonta

•Notodonta dromedarius(moth N.dromedarius)(info)GCA_905147325.1

Pheosia

•Pheosia tremula(moth P.tremula)(info)GCA_905333125.1

Phalerinae

Phalera

•Phalera bucephala(moth P.bucephala)(info)GCA_905147815.2

•Antheraea pernyi(Chinese oak silkmoth (Jiaolan 2020))(info)GCA_015888305.1

Actias

•Actias luna(moth A.luna (ACLU0235-NS2497 2024))(info)GCA_039707435.1

Attacini

Samia

•Samia ricini(Indian eri silkmoth (White GU1 2025))(info)GCA_048571015.1

•Bombyx mori(domestic silkworm (p50T 2023))(info)GCF_030269925.1

•Bombyx mori(domestic silkworm (p50T = Dazao 2008))(info)GCA_000151625.1

•Bombyx mori(domestic silkworm (refseq 2020))(info)GCF_014905235.1

•Bombyx mori(domestic silkworm (genbank 2020))(info)GCA_014905235.2

•Bombyx mandarina(wild silkworm)(info)GCF_003987935.1

Lasiocampidae

Lasiocampinae

Dendrolimus

•Dendrolimus punctatus(masson pine moth)(info)GCA_012273795.1

•Deilephila porcellus(moth D.porcellus)(info)GCA_905220455.1

Dilophonotini

Hemaris

•Hemaris fuciformis(moth H.fuciformis)(info)GCA_907164795.1

Smerinthinae

Smerinthini

Laothoe

•Laothoe populi(moth L.populi)(info)GCA_905220505.1

Mimas

•Mimas tiliae(moth M.tiliae)(info)GCA_905332985.1

Sphinginae

Sphingini

Manduca

•Manduca sexta(tobacco hornworm)(info)GCF_014839805.1

•Hesperia comma(common branded skipper)(info)GCA_905404135.1

Eudaminae

Eudamini

Epargyreus

•Epargyreus clarus(moth E.clarus (2025))(info)GCF_041222505.1

Pyrginae

Erynnis

•Erynnis tages(moth E.tages)(info)GCA_905147235.1

•Ennomos fuscantarius(dusky thorn)(info)GCA_905220475.1

•Ennomos quercinarius(moth E.quercinarius)(info)GCA_910589525.1

Crocallis

•Crocallis elinguaria(moth C.elinguaria)(info)GCA_907269065.1

Ectropis

•Ectropis grisescens(moth E.grisescens)(info)GCA_017562165.1

Hylaea

•Hylaea fasciaria(moth H.fasciaria)(info)GCA_905147375.1

Erannis

•Erannis defoliaria(mottled umber moth)(info)GCA_905404285.1

Biston

•Biston betularia(pepper-and-salt moth)(info)GCA_905404145.1

Sterrhinae

Idaea

•Idaea aversata(Riband wave)(info)GCA_907269075.1

•Habrosyne pyritoides(moth H.pyritoides)(info)GCA_907165245.1

Thyatira

•Thyatira batis(moth T.batis)(info)GCA_905147785.1

•Cydia pomonella(codling moth (Jiuquan 2019))(info)GCA_003425675.2

•Cydia pomonella(codling moth (Wapato2018A 2023))(info)GCF_033807575.1

•Cydia amplana(moth C.amplana (primary hap 2023))(info)GCF_948474715.1

•Cydia fagiglandana(moth C.fagiglandana (primary hap 2023))(info)GCF_963556715.1

Cydia splendana

•Cydia splendana(moth C.splendana (2022 refseq))(info)GCF_910591565.1

•Cydia splendana(moth C.splendana (v1 2021 genbank))(info)GCA_910591565.1

•Cydia strobilella(moth C.strobilella (primary hap 2022))(info)GCF_947568885.1

Leguminivora

•Leguminivora glycinivorella(moths (SPB_JAAS2020 2022))(info)GCF_023078275.1

Grapholita

•Grapholita molesta(oriental fruit moth (lab01 2022))(info)GCA_022674325.1

Olethreutini

Apotomis

•Apotomis turbidana(moth A.turbidana)(info)GCA_905147355.1

Hedya

•Hedya salicella(moth H.salicella)(info)GCA_905404275.1

Eucosmini

Notocelia

•Notocelia uddmanniana(moth N.uddmanniana)(info)GCA_905163555.1

Tortricinae

Archipini

Choristoneura

•Choristoneura fumiferana(eastern spruce budworm (2022))(info)GCF_025370935.1

Copromorphoidea

Carposinidae

Carposina

•Carposina sasakii(moth C.sasakii)(info)GCA_014607495.2

•Zygaena filipendulae(moth Z.filipendulae)(info)GCA_907165275.1

•Zeuzera pyrina(moth Z.pyrina)(info)GCA_907165235.1

•Bembecia ichneumoniformis(six-belted clearwing)(info)GCA_910589475.1

•Plutella xylostella(diamondback moth (LV U. Adelaide 2021))(info)GCA_019096205.1

•Plutella xylostella(diamondback moth (U. Liverpool 2020))(info)GCF_905116875.1

•Plutella xylostella(diamondback moth (Wellcome Sanger 2022))(info)GCF_932276165.1

Ypsolophidae

Ypsolopha

•Ypsolopha scabrella(moth Y.scabrella)(info)GCA_910592155.1

Gelechioidea

Blastobasidae

Blastobasis

•Blastobasis adustella(moth B.adustella)(info)GCA_907269095.1

•Blastobasis lacticolella(moth B.lacticolella)(info)GCA_905147135.1

Depressariidae

Depressariidae incertae sedis

Carcina

•Carcina quercana(moth C.quercana)(info)GCA_910589575.1

Cosmopterigidae

Cosmopteriginae

Hyposmocoma

•Hyposmocoma kahamanoa(moth H.kahamanoa)(info)GCF_003589595.1

Gelechiidae

Apatetrinae

Pectinophora

•Pectinophora gossypiella(pink bollworm (primary hap 2022))(info)GCF_024362695.1

Gelechiinae

Phthorimaea

•Phthorimaea operculella(potato tuberworm (IPPTM01 2022))(info)GCA_024500475.1

•Tinea semifulvella(moth T.semifulvella)(info)GCA_910589645.1

•Tinea trinotella(moth T.trinotella)(info)GCA_905220615.1

•Arctopsyche grandis(giant orange sedge A.grandis (Sample6627 2025))(info)GCF_051622035.1

•Anopheles funestus(African malaria mosquito (FUMOZ 2018))(info)GCA_003951495.1

•Anopheles funestus(African malaria mosquito (primary hap DQ-416_04 2022))(info)GCF_943734845.2

culicifacies species complex

•Anopheles culicifacies(mosquito A.culicifacies (species A-37_1 2013))(info)GCA_000473375.1

•Anopheles marshallii(mosquito A.marshallii (primary hap 2022))(info)GCF_943734725.1

minimus group

minimus species complex

•Anopheles minimus(mosquito A.minimus (MINIMUS1 2013))(info)GCA_000349025.1

•Anopheles moucheti(mosquito A.moucheti (primary hap 2022))(info)GCF_943734755.1

Pyretophorus

gambiae species complex

Anopheles gambiae

•Anopheles gambiae(African malaria mosquito (primary hap NW_F1_1 2022))(info)GCF_943734735.2

•Anopheles gambiae(African malaria mosquito (S 2008))(info)GCA_000150785.1

Anopheles gambiae str. PEST

•Anopheles gambiae str. PEST(African malaria mosquito (PEST 2006))(info)GCF_000005575.2

•Anopheles gambiae str. PEST(African malaria mosquito (PEST 2006))(info)GCA_000005575.1

Anopheles arabiensis

•Anopheles arabiensis(mosquito A.arabiensis (DONG5_A 2013))(info)GCA_000349185.1

•Anopheles arabiensis(mosquito A.arabiensis (DONGOLA 2021))(info)GCF_016920715.1

Anopheles coluzzii

•Anopheles coluzzii(mosquito A.coluzzi (MOPTI 2021))(info)GCF_016920705.1

•Anopheles coluzzii(mosquito A.coluzzii (M 2008))(info)GCA_000150765.1

•Anopheles coluzzii(mosquito A.coluzzii (Ngousso colony 2019))(info)GCA_004136515.2

•Anopheles coluzzii(mosquito A.coluzzii (primary hap 2022))(info)GCF_943734685.1

•Anopheles melas(mosquito A.melas (CM1001059_A 2014))(info)GCA_000473525.2

Anopheles merus

•Anopheles merus(mosquito A.merus (MAF 2014))(info)GCA_000473845.2

•Anopheles merus(mosquito A.merus (MAF 2021))(info)GCF_017562075.2

•Anopheles quadriannulatus(mosquito A.quadriannulatus (QUAD4_A 2013))(info)GCA_000349065.1

•Anopheles christyi(mosquito A.christyi (ACHKN1017 2013))(info)GCA_000349165.1

sundaicus species complex

•Anopheles epiroticus(mosquito A.epiroticus (epiroticus2 2013))(info)GCA_000349105.1

Neocellia

Anopheles stephensi

•Anopheles stephensi(Asian malaria mosquito)(info)GCF_013141755.1

•Anopheles stephensi(Asian malaria mosquito (Indian Wild Type Walter Reed 2013))(info)GCA_000300775.2

•Anopheles stephensi(Asian malaria mosquito (SDA-500 2013))(info)GCA_000349045.1

Anopheles maculatus group

•Anopheles maculatus(mosquito A.maculatus (maculatus3 2013))(info)GCA_000473185.1

•Anopheles maculipalpis(mosquito A.maculipalpis (primary hap 2022))(info)GCF_943734695.1

Neomyzomyia

leucosphyrus group

leucosphyrus subgroup

dirus species complex

•Anopheles dirus(mosquito A.dirus (WRAIR2 2013))(info)GCA_000349145.1

punctulatus species complex

•Anopheles farauti(mosquito A.farauti (FAR1 2014))(info)GCA_000473445.2

ardensis group

nili species complex

•Anopheles nili(mosquito A.nili (primary hap 2022))(info)GCF_943737925.1

•Anopheles darlingi(American malaria mosquito (2013))(info)GCA_000211455.3

•Anopheles darlingi(American malaria mosquito (primary hap 2022))(info)GCF_943734745.1

albimanus section

albimanus series

Anopheles albimanus

•Anopheles albimanus(mosquito A.albimanus (ALBI9_A 2017))(info)GCA_000349125.2

•Anopheles albimanus(mosquito A.albimanus (STELCA 2020))(info)GCF_013758885.1

oswaldoi series

oswaldoi group

oswaldoi subgroup

•Anopheles aquasalis(mosquito A.aquasalis (primary hap 2022))(info)GCF_943734665.1

maculipennis species complex

•Anopheles atroparvus(mosquito A.atroparvus (EBRO 2013))(info)GCA_000473505.1

Laticorn

Myzorhynchus

coustani group

•Anopheles coustani(mosquito A.coustani (2023))(info)GCF_943734705.1

•Anopheles ziemanni(mosquito A.ziemanni (2023))(info)GCF_943734765.1

hyrcanus group

Anopheles sinensis

•Anopheles sinensis(mosquito A.sinensis (2014))(info)GCA_000441895.2

•Anopheles sinensis(mosquito A.sinensis (SINENSIS 2014))(info)GCA_000472065.2

Kerteszia

•Anopheles bellator(mosquito A.bellator (2023))(info)GCF_943735745.2

•Anopheles cruzii(mosquito A.cruzii (2022))(info)GCF_943734635.1

•Aedes albopictus(Asian tiger mosquito (AalbF3 FPA 2021))(info)GCA_018104305.1

•Aedes albopictus(Asian tiger mosquito (Aalbo alternate FPA 2019))(info)GCA_006516635.1

•Aedes albopictus(Asian tiger mosquito (C6/36 2017 refseq))(info)GCF_001876365.2

•Aedes albopictus(Asian tiger mosquito (Foshan 2024))(info)GCF_035046485.1

•Aedes albopictus(Asian tiger mosquito (Foshan BGI 2016))(info)GCA_001444175.2

•Aedes albopictus(Asian tiger mosquito (v2 FPA 2019))(info)GCF_006496715.2

•Aedes albopictus(Asian tiger mosquito (C6/36 2017 genbank))(info)GCA_001876365.2

•Aedes albopictus(Asian tiger mosquito (v1 FPA 2019 genbank)(info)GCA_006496715.1

•Aedes albopictus(Asian tiger mosquito (v1 FPA 2019 refseq))(info)GCF_006496715.1

Aedes aegypti

•Aedes aegypti(yellow fever mosquito (Aag2 2022))(info)GCA_021653915.1

•Aedes aegypti(yellow fever mosquito (LVP_AGWG 2017 refseq))(info)GCF_002204515.2

•Aedes aegypti(yellow fever mosquito (LVP_AGWG 2017 genbank))(info)GCA_002204515.1

Armigeres

•Armigeres subalbatus(mosquito A.subalbatus (Guangzhou_Male 2023))(info)GCF_024139115.2

Ochlerotatus

•Ochlerotatus camptorhynchus(mosquito O.camptorhynchus (MF236.1 2024))(info)GCF_037179485.1

Sabethini

Malaya

•Malaya genurostris(mosquito M.genurostris (Urasoe2022 2023))(info)GCF_030247185.1

Sabethes

•Sabethes cyaneus(mosquito S.cyaneus (primary hap 2022))(info)GCF_943734655.1

Topomyia

•Topomyia yanbarensis(mosquito T.yanbarensis (Yona2022 2023))(info)GCF_030247195.1

Wyeomyia

•Wyeomyia smithii(pitcher-plant mosquito (HCP4-BCI-WySm-NY-G18 2023))(info)GCF_029784165.1

Uranotaeniini

Uranotaenia

•Uranotaenia lowii(mosquito U.lowii(MFRU-FL 2023))(info)GCF_029784155.1

Culicini

Culex

Culex pipiens complex

Culex pipiens

Culex pipiens pallens

•Culex pipiens pallens(northern house mosquito (v2 TS 2022))(info)GCF_016801865.2

•Culex pipiens pallens(northern house mosquito (v1 TS 2021))(info)GCF_016801865.1

Culex quinquefasciatus

•Culex quinquefasciatus(southern house mosquito)(info)GCF_015732765.1

•Culex quinquefasciatus(southern house mosquito (JHB 2007 refseq))(info)GCF_000209185.1

•Culex quinquefasciatus(southern house mosquito (JHB 2007 genbank))(info)GCA_000209185.1

Toxorhynchitinae

Toxorhynchites

Toxorhynchites rutilus

•Toxorhynchites rutilus septentrionalis(mosquito T.rutilus septentrionalis (SRP 2023))(info)GCF_029784135.1

•Culicoides brevitarsis(fly C.brevitarsis (CSIRO-B50_1 2024))(info)GCF_036172545.1

Monoculicoides

•Culicoides sonorensis(fly C.sonorensis (2021))(info)GCA_900258525.3

•Chironomus tepperi(fly C.tepperi (1889 2024))(info)GCF_022539635.2

•Bradysia coprophila(fly B.coprophila (v1 Holo2 2020 refseq))(info)GCF_014529535.1

•Bradysia coprophila(fly B.coprophila (v2 Holo2 2023 genbank))(info)GCA_014529535.2

•Sitodiplosis mosellana(orange wheat blossom midge (CC-2019 2019))(info)GCF_009176505.1

Contarinia

•Contarinia nasturtii(swede midge)(info)GCF_009176525.2

Lutzomyia longipalpis

•Lutzomyia longipalpis(fly L.longipalpis (2012))(info)GCA_000265325.1

•Lutzomyia longipalpis(fly L.longipalpis (SR_M1_2022 2022))(info)GCF_024334085.1

Phlebotomus

Euphlebotomus

•Phlebotomus argentipes(fly P.argentipes (2022))(info)GCF_947086385.1

Phlebotomus

Phlebotomus papatasi

•Phlebotomus papatasi(fly P.papatasi (2012))(info)GCA_000262795.1

•Phlebotomus papatasi(fly P.papatasi (M1 2022))(info)GCF_024763615.1

•Rhagoletis pomonella(apple maggot)(info)GCF_013731165.1

Rhagoletis zephyria

•Rhagoletis zephyria(snowberry fruit fly (East Lansing v1.1 2016))(info)GCF_001687245.2

•Rhagoletis zephyria(snowberry fruit fly (East Lansing v1.0 2016))(info)GCF_001687245.1

Toxotrypanini

Anastrepha

•Anastrepha obliqua(fly A.obliqua (idAnaObli1 2023))(info)GCF_027943255.1

•Anastrepha ludens(Mexican fruit fly (Willacy primary hap 2023))(info)GCF_028408465.1

Dacinae

Dacini

Bactrocera

Bactrocera tyroni species complex

•Bactrocera neohumeralis(flies B.neohumeralis (Rockhampton 2022))(info)GCF_024586455.1

Bactrocera tryoni

•Bactrocera tryoni(Queensland fruit fly (bent wings 2014))(info)GCA_000695345.1

•Bactrocera tryoni(Queensland fruit fly (S06 2021))(info)GCF_016617805.1

•Bactrocera latifrons(fly B.latifrons)(info)GCF_001853355.1

Bactrocera dorsalis complex

Bactrocera dorsalis

•Bactrocera dorsalis(oriental fruit fly (Fly_Bdor 2022))(info)GCF_023373825.1

•Bactrocera dorsalis(oriental fruit fly (Punador 2014))(info)GCF_000789215.1

Bactrocera zonata species complex

Bactrocera zonata

•Bactrocera zonata(peach fruit fly (2024))(info)GCA_043005645.1

•Bactrocera zonata(peach fruit fly (Israel wild type primary hap 2024))(info)GCA_037783105.1

Daculus

Bactrocera oleae

•Bactrocera oleae(olive fruit fly)(info)GCF_001188975.3

•Bactrocera oleae(olive fruit fly (primary hap 2024))(info)GCF_042242935.1

Zeugodacus

Zeugodacus cucurbitae

•Zeugodacus cucurbitae(melon fly (PBARC_wt_2022May primary hap 2023))(info)GCF_028554725.1

•Zeugodacus cucurbitae(melon fly (v2 USDA-PBARC White Pupae T1 2014))(info)GCF_000806345.2

•Zeugodacus cucurbitae(melon fly (v1 USDA-PBARC White Pupae T1 2014))(info)GCF_000806345.1

Ceratitidini

Ceratitis

•Ceratitis capitata(Mediterranean fruit fly)(info)GCF_000347755.3

•Eurosta solidaginis(goldenrod gall fly (ZX-2024a 2024))(info)GCF_040869045.1

Drosophila albomicans

•Drosophila albomicans(fly D.albomicans (v2 15112-1751.03 2022))(info)GCF_009650485.2

•Drosophila albomicans(fly D.albomicans (v1 15112-1751.03 2019))(info)GCF_009650485.1

•Drosophila nasuta(fly D.nasuta (15112-1781.00 2022))(info)GCF_023558535.2

Drosophila sulfurigaster

•Drosophila sulfurigaster albostrigata(fly D.sulfurigaster albostrigata (15112-1811.04 2022))(info)GCF_023558435.1

repleta group

mulleri subgroup

mojavensis species complex

•Drosophila arizonae(fly D.arizonae)(info)GCF_001654025.1

Drosophila mojavensis

•Drosophila mojavensis(fly D.mojavensis (Agencourt 2006))(info)GCF_000005175.2

•Drosophila mojavensis(fly D.mojavensis (Stanford 2021))(info)GCF_018153725.1

•Drosophila navojoa(fly D.navojoa)(info)GCF_001654015.2

hydei subgroup

•Drosophila hydei(fly D.hydei)(info)GCF_003285905.1

quinaria group

Drosophila innubila

•Drosophila innubila(fly D.innubila (TH190305 2019 refseq))(info)GCF_004354385.1

•Drosophila innubila(fly D.innubila (TH190305 2020 genbank))(info)GCA_004354385.2

virilis group

•Drosophila montana(fly D.montana (Dmon_TW-CO22-7 2024))(info)GCF_035044405.1

•Drosophila novamexicana(fly D.novamexicana)(info)GCF_003285875.2

Drosophila virilis

•Drosophila virilis(fly D.virilis)(info)GCF_003285735.1

•Drosophila virilis(fly D.virilis (15010-1051.87 2023))(info)GCF_030788295.1

•Drosophila virilis(fly D.virilis (160 2020))(info)GCA_007989325.2

Sophophora

melanogaster group

ananassae subgroup

ananassae species complex

Drosophila ananassae

•Drosophila ananassae(fly D.ananassae (14024-0371.13 U. Maryland 2021))(info)GCF_017639315.1

•Drosophila ananassae(fly D.ananassae (14024-0371.16-18 U. Chicago 2018))(info)GCF_003285975.2

bipectinata species complex

Drosophila bipectinata

•Drosophila bipectinata(fly D.bipectinata (14024-0381.07 2023))(info)GCF_030179905.1

•Drosophila bipectinata(fly D.bipectinata (BCM 2013))(info)GCF_000236285.1

•Drosophila bipectinata(fly D.bipectinata (Stanford 2021))(info)GCF_018153845.1

suzukii subgroup

Drosophila biarmipes

•Drosophila biarmipes(fly D.biarmipes (14023-0361.09 2024))(info)GCA_035046375.1

•Drosophila biarmipes(fly D.biarmipes (BCM 2013))(info)GCF_000233415.1

•Drosophila biarmipes(fly D.biarmipes (raj3 2022))(info)GCF_025231255.1

•Drosophila biarmipes(fly D.biarmipes (Stanford 2021))(info)GCF_018148935.1

•Drosophila subpulchrella(fly D.subpulchrella)(info)GCF_014743375.2

Drosophila suzukii

•Drosophila suzukii(fly D.suzukii)(info)GCF_013340165.1

•Drosophila suzukii(fly D.suzukii (2024))(info)GCF_043229965.1

•Drosophila suzukii(fly D.suzukii (WT10 2024))(info)GCF_037355615.1

elegans subgroup

Drosophila elegans

•Drosophila elegans(fly D.elegans (Baylor 2013))(info)GCF_000224195.1

•Drosophila elegans(fly D.elegans (Stanford 2021))(info)GCF_018152505.1

•Drosophila gunungcola(fruit fly (Sukarami 2022))(info)GCF_025200985.1

{32348}

•in[0.0000]

melanogaster subgroup

•Drosophila erecta(fly D.erecta)(info)GCF_003286155.1

•Drosophila mauritiana(fly D.mauritiana)(info)GCF_004382145.1

•Drosophila melanogaster(fly D.melanogaster)(info)GCF_000001215.4

•Drosophila orena(fly D.orena (14021-0245.01 2019))(info)GCA_005876975.1

Drosophila santomea

•Drosophila santomea(fly D.santomea (v1.1 2021))(info)GCF_016746245.2

•Drosophila santomea(fly D.santomea (v1.0 2021))(info)GCF_016746245.1

Drosophila sechellia

•Drosophila sechellia(fly D.sechellia (sech25 v2 2019 UC Irvine))(info)GCF_004382195.2

•Drosophila sechellia(fly D.sechellia (sech25 v1 2019 UC Irvine))(info)GCF_004382195.1

Drosophila simulans

•Drosophila simulans(fly D.simulans (w501 v3.1 2021))(info)GCF_016746395.2

•Drosophila simulans(fly D.simulans (WXD1 2019))(info)GCA_004382185.1

•Drosophila simulans(fly D.simulans (w501 v3.0 2021))(info)GCF_016746395.1

•Drosophila teissieri(fly D.teissieri)(info)GCF_016746235.2

Drosophila yakuba

•Drosophila yakuba(fly D.yakuba (v2 2021))(info)GCF_016746365.2

•Drosophila yakuba(fly D.yakuba (2018))(info)GCF_000005975.2

•Drosophila yakuba(fly D.yakuba (v1 2021))(info)GCF_016746365.1

eugracilis subgroup

Drosophila eugracilis

•Drosophila eugracilis(fly D.eugracilis (modENCODE 2013))(info)GCF_000236325.1

•Drosophila eugracilis(fly D.eugracilis (Stanford 2021))(info)GCF_018153835.1

ficusphila subgroup

Drosophila ficusphila

•Drosophila ficusphila(fly D.ficusphila (BCM 2013))(info)GCF_000220665.1

•Drosophila ficusphila(fly D.ficusphila (Stanford 2021))(info)GCF_018152265.1

montium subgroup

Drosophila kikkawai

•Drosophila kikkawai(fly D.kikkawai (14028-0561.14 2023))(info)GCF_030179895.1

•Drosophila kikkawai(fly D.kikkawai (Baylor 2013))(info)GCF_000224215.1

•Drosophila kikkawai(fly D.kikkawai (Stanford 2021))(info)GCF_018152535.1

•Drosophila leontia(fly D.leontia (RGN 210-13 2019))(info)GCA_008042735.1

Drosophila serrata species complex

Drosophila serrata

•Drosophila serrata(fly D.serrata (v1.1 Fors4 2017))(info)GCF_002093755.2

•Drosophila serrata(fly D.serrata (v1.0 Fors4 2017))(info)GCF_002093755.1

rhopaloa subgroup

Drosophila rhopaloa

•Drosophila rhopaloa(fly D.rhopaloa (modENCODE 2013))(info)GCF_000236305.1

•Drosophila rhopaloa(fly D.rhopaloa (Stanford 2021))(info)GCF_018152115.1

takahashii subgroup

Drosophila takahashii

•Drosophila takahashii(fly D.takahashii (BCM 2013))(info)GCF_000224235.1

•Drosophila takahashii(fly D.takahashii (IR98-3 E-12201 2023))(info)GCF_030179915.1

•Drosophila takahashii(fly D.takahashii (Stanford 2021))(info)GCF_018152695.1

obscura group

affinis subgroup

•Drosophila azteca(fly D.azteca (UCSD 14012-1071.03 2019))(info)GCA_005876895.1

obscura subgroup

•Drosophila guanche(fly D.guanche)(info)GCF_900245975.1

Drosophila obscura

•Drosophila obscura(fly D.obscura (Stanford 2021))(info)GCF_018151105.1

•Drosophila obscura(fly D.obscura 14011-0151.01)(info)GCF_002217835.1

•Drosophila subobscura(fly D.subobscura)(info)GCF_008121235.1

pseudoobscura subgroup

•Drosophila lowei(fly D.lowei (Jillo6 2019))(info)GCA_008121275.1

•Drosophila miranda(fly D.miranda)(info)GCF_003369915.1

•Drosophila persimilis(fly D.persimilis)(info)GCF_003286085.1

•Drosophila pseudoobscura(fly D.pseudoobscura)(info)GCF_009870125.1

willistoni group

bocainensis subgroup

•Drosophila nebulosa(fly D.nebulosa (14030-0761.06 2022))(info)GCA_024703675.1

•Drosophila sucinea(fly D.sucinea (14030-0791.01 2021))(info)GCA_018150745.1

willistoni subgroup

•Drosophila tropicalis(fly D.tropicalis (14030-0801.00 2023))(info)GCF_018151085.1

Drosophila willistoni

•Drosophila willistoni(fly D.willistoni (14030-0811.24 2021))(info)GCF_018902025.1

•Drosophila willistoni(fly D.willistoni (TSC 14030-0811.24 2006))(info)GCF_000005925.1

Dorsilopha

•Drosophila busckii(fly D.busckii)(info)GCF_011750605.1

•Drosophila grimshawi(fly D.grimshawi (Agencourt 2006))(info)GCF_000005155.2

•Drosophila grimshawi(fly D.grimshawi (Stanford 2021))(info)GCF_018153295.1

Colocasiomyini

Scaptodrosophila

victoria group

•Scaptodrosophila lebanonensis(fly S.lebanonensis)(info)GCF_003285725.1

Diopsoidea

Diopsidae

Teleopsis

•Teleopsis dalmanni(fly T.dalmanni)(info)GCF_002237135.1

•Lucilia cuprina(Australian sheep blowfly)(info)GCF_000699065.1

•Lucilia cuprina(Australian sheep blowfly (Lc7/37 2022))(info)GCF_022045245.1

•Lucilia sericata(common green bottle fly)(info)GCF_015586225.1

Chrysomyinae

Phormini

Phormia

•Phormia regina(black blowfly (Indy2012f 2016))(info)GCA_001735545.1

Chrysomyini

Chrysomya

•Chrysomya rufifacies(hairy maggot blowfly (CPM2020 2020))(info)GCA_014858695.1

Cochliomyia

Cochliomyia hominivorax

•Cochliomyia hominivorax(primary screw-worm (J06 Research Colony 2022))(info)GCA_004302925.2

•Cochliomyia hominivorax(screw-worm (Jam-Pan-F1 alternate hap 2025))(info)GCA_051144935.1

•Cochliomyia hominivorax(screw-worm (Jam-Pan-F1 primary hap 2025))(info)GCA_051144965.1

Calliphorinae

Calliphora

•Calliphora vicina(urban bluebottle blowfly (primary hap 2023))(info)GCF_958450345.1

•Musca autumnalis(face fly (F117 2025))(info)GCF_047663935.1

Byomya

•Musca vetustissima(fly M.vetustissima (Yass MV318-11 2023))(info)GCF_032173495.1

Musca

Musca domestica

•Musca domestica(house fly (aabys 2013 refseq))(info)GCF_000371365.1

•Musca domestica(house fly (aabys 2023))(info)GCF_030504385.1

•Musca domestica(house fly (aabys 2013 genbank))(info)GCA_000371365.1

Stomoxyini

Haematobia

•Haematobia irritans(horn fly (KBUSLIRL 2025))(info)GCF_050003625.1

Stomoxys

Stomoxys calcitrans

•Stomoxys calcitrans(stable fly (8C7A2A5H3J4 2015 rewfseq))(info)GCF_001015335.1

•Stomoxys calcitrans(stable fly (primary hap 2023))(info)GCF_963082655.1

•Stomoxys calcitrans(stable fly (8C7A2A5H3J4 2015 genbank))(info)GCA_001015335.1

•Glossina fuscipes(tsetse fly (v2 IAEA_lab_2018 2020))(info)GCF_014805625.2

•Glossina fuscipes(tsetse fly (v1 IAEA_lab_2018 2020))(info)GCF_014805625.1

•Glossina fuscipes fuscipes(tsetse fly G.fuscipes fuscipes (2014))(info)GCA_000671735.1

Glossina palpalis

•Glossina palpalis gambiensis(tsetse fly G.palpalis gambiensis (146720 2015))(info)GCA_000818775.1

Glossina

•Glossina austeni(tsetse fly G.austeni (2014))(info)GCA_000688735.1

Glossina morsitans

•Glossina morsitans morsitans(tsetse fly G.morsitans morsitans (Yale 2014))(info)GCA_001077435.1

•Glossina pallidipes(tsetse fly G.pallidipes (2014))(info)GCA_000688715.1

Austenina

•Glossina brevipalpis(tsetse fly G.brevipalpis (2014))(info)GCA_000671755.1

•Megaselia abdita(fly M.abdita (Sander 2025))(info)GCA_048544405.1

•Eupeodes corollae(hoverfly E.corollae (primary hap 2022))(info)GCF_945859685.1

Episyrphus

•Episyrphus balteatus(marmalade hoverfly (primary hap 2022))(info)GCF_945859705.1

•Condylostylus longicornis(fly C.longicornis (FDR11 2023))(info)GCF_029603195.1

•Hermetia illucens(fly H.illucens)(info)GCF_905115235.1

•Megachile rotundata(alfalfa leafcutting bee (2011))(info)GCF_000220905.1

•Megachile rotundata(alfalfa leafcutting bee (GNS110a 2025))(info)GCF_050947335.1

Osmiini

Osmia

Osmia lignaria

•Osmia lignaria(orchard mason bee (UT-Olig-1 2020))(info)GCF_012274295.1

•Osmia lignaria lignaria(orchard mason bee (PbOS001 2025))(info)GCF_051020975.1

Osmia bicornis

Osmia bicornis bicornis

•Osmia bicornis bicornis(red mason bee (2021))(info)GCF_907164935.1

•Osmia bicornis bicornis(red mason bee (LIB18336 2019))(info)GCF_004153925.1

•Nomia melanderi(Alkali bee (GNS246 2025))(info)GCF_051020985.1

•Nomia melanderi(alkali bee (v1.3 Touchet_males 2018))(info)GCF_003710045.2

•Nomia melanderi(alkali bee (v1.2 Touchet_males 2018))(info)GCF_003710045.1

Rophitinae

Dufourea

•Dufourea novaeangliae(bee D.novaeangliae)(info)GCF_001272555.1

Halictinae

Halictini

Halictus

•Halictus rubicundus(bee H.rubicundus (RS-2024b primary hap 2025))(info)GCF_050948215.1

Lasioglossum

Evylaeus

•Lasioglossum baleicum(bee L.baleicum (2025))(info)GCF_051020765.1

Augochlorini

Megalopta

Megalopta genalis

•Megalopta genalis(bee M.genalis)(info)GCF_011865705.1

•Megalopta genalis(bee M.genalis (19385.01 primary hap 2025))(info)GCF_051020955.1

Augochlora

•Augochlora pura(pure green sweat bee A.pura (Apur16 2023))(info)GCF_028453695.1

•Apis cerana(Asiatic honeybee)(info)GCF_001442555.1

•Apis cerana(Asiatic honeybee (GH-2021 2023))(info)GCF_029169275.1

•Apis dorsata(giant honeybee)(info)GCF_000469605.1

•Apis laboriosa(Himalayan honeybee)(info)GCF_014066325.1

Apis mellifera

•Apis mellifera(honey bee (DH4 2011))(info)GCA_000002195.1

•Apis mellifera(honey bee (DH4 2018))(info)GCF_003254395.2

•Apis florea(little honeybee)(info)GCF_000184785.3

Bombini

Bombus

•Bombus affinis(bee B.affinis (iyBomAffi1 2022))(info)GCF_024516045.1

Bombus fervidus

•Bombus fervidus(bee B.fervidus (BK054 2024))(info)GCF_041682495.1

•Bombus fervidus(bee B.fervidus (BK054 2025))(info)GCF_041682495.2

Bombus terrestris

•Bombus terrestris(buff-tailed bumblebee (2011 BCM))(info)GCF_000214255.1

•Bombus terrestris(buff-tailed bumblebee (2022 Wellcome Sanger))(info)GCF_910591885.1

Pyrobombus

•Bombus bifarius(bee B.bifarius)(info)GCF_011952205.1

•Bombus flavifrons(bee B.flavifrons (JBK064 primary hap 2024))(info)GCF_040668555.1

•Bombus huntii(bee B.huntii (Logan2020A 2022))(info)GCF_024542735.1

Bombus vancouverensis

Bombus vancouverensis nearcticus

•Bombus vancouverensis nearcticus(bee B.vancouverensis nearcticus)(info)GCF_011952275.1

•Bombus vancouverensis nearcticus(bee B.vancouverensis nearcticus (primary hap 2025))(info)GCF_051014615.1

•Bombus vosnesenskii(bee B.vosnesenskii)(info)GCF_011952255.1

•Bombus impatiens(common eastern bumble bee)(info)GCF_000188095.3

Thoracobombus

•Bombus pascuorum(bee B.pascuorum (primary hap 2021))(info)GCF_905332965.1

Melanobombus

•Bombus pyrosoma(bee B.pyrosoma)(info)GCF_014825855.1

Euglossini

Eufriesea

Eufriesea mexicana

•Eufriesea mexicana(bee E.mexicana (v2 0111107269 2016))(info)GCF_001483705.2

•Eufriesea mexicana(bee E.mexicana (v1 0111107269 2016))(info)GCF_001483705.1

Euglossa

•Euglossa dilemma(dilemma orchid bee (1 2017))(info)GCA_002201625.1

Meliponini

Frieseomelitta

•Frieseomelitta varia(bee F.varia)(info)GCF_011392965.1

Anthophorini

Habropoda

•Habropoda laboriosa(bee H.laboriosa)(info)GCF_001263275.1

•Ceratina calcarata(bee C.calcarata (v2 Rehan_Ccalc_2016 2016))(info)GCF_001652005.2

•Ceratina calcarata(bee C.calcarata (v1 Rehan_Ccalc_2016 2016))(info)GCF_001652005.1

Xylocopini

Xylocopa

Neoxylocopa

•Xylocopa sonorina(bee X.sonorina (GNS202 primary hap 2025))(info)GCF_050948175.1

Xylocopa

•Xylocopa violacea(bee X.violacea (2024))(info)GCA_963969225.2

•Andrena cerasifolii(bee A.cerasifolii (SP2316 primary hap 2025))(info)GCF_050908995.1

Panurginae

Calliopsini

Calliopsis

•Calliopsis andreniformis(bee C.andreniformis (RMS-2024a primary hap 2025))(info)GCF_051401765.1

Colletidae

Colletinae

Colletes

•Colletes gigas(bee C.gigas)(info)GCF_013123115.1

•Colletes latitarsis(bee C.latitarsis (SP2378_abdomen 2025))(info)GCF_051014445.1

Hylaeinae

Hylaeus

Nesoprosopis

•Hylaeus anthracinus(bee H.anthracinus (JK02 2022))(info)GCF_026225885.1

•Hylaeus volcanicus(bee H.volcanicus (JK05 2022))(info)GCF_026283585.1

Diphaglossinae

Caupolicanini

Ptiloglossa

•Ptiloglossa arizonensis(bee P.arizonensis (GNS036 primary hap 2025))(info)GCF_051014685.1

•Atta cephalotes(ant A.cephalotes)(info)GCF_000143395.1

•Atta colombica(ant A.colombica)(info)GCF_001594045.1

Cyphomyrmex

Cyphomyrmex costatus

•Cyphomyrmex costatus(ant C.costatus (v2 MS0001 2016))(info)GCF_001594065.2

•Cyphomyrmex costatus(ant C.costatus (v1 MS0001 2016))(info)GCF_001594065.1

Trachymyrmex

Trachymyrmex cornetzi

•Trachymyrmex cornetzi(ant T.cornetzi (Tcor2-1 v1.1 2016 BGI))(info)GCF_001594075.2

•Trachymyrmex cornetzi(ant T.cornetzi (Tcor2-1 v1.0 2016 BGI))(info)GCF_001594075.1

•Trachymyrmex septentrionalis(ant T.septentrionalis)(info)GCF_001594115.1

Mycetomoellerius

•Mycetomoellerius zeteki(ant T.zeteki)(info)GCF_001594055.1

Acromyrmex

•Acromyrmex echinatior(Panamanian leafcutter ant)(info)GCF_000204515.1

Crematogastrini

Cardiocondyla

•Cardiocondyla obscurior(ant C.obscurior (alpha-2009 2024))(info)GCF_019399895.1

Temnothorax

•Temnothorax americanus(ant T.americanus (GAGA-0224 2025))(info)GCF_048541705.1

•Temnothorax curvispinosus(ant T.curvispinosus)(info)GCF_003070985.1

•Temnothorax longispinosus(ant T.longispinosus (EJ_2023e 2024))(info)GCF_030848805.1

•Temnothorax nylanderi(ant T.nylanderi (EJ_2023f 2023))(info)GCF_030848795.1

Stenammini

Vollenhovia

•Vollenhovia emeryi(ant V.emeryi)(info)GCF_000949405.1

Blepharidattini

Wasmannia

•Wasmannia auropunctata(little fire ant)(info)GCF_000956235.1

Solenopsidini

Monomorium

•Monomorium pharaonis(pharaoh ant)(info)GCF_013373865.1

Solenopsis

Solenopsis invicta

•Solenopsis invicta(red fire ant (2018))(info)GCF_000188075.2

•Solenopsis invicta(red fire ant (2021))(info)GCF_016802725.1

Pogonomyrmecini

Pogonomyrmex

•Pogonomyrmex barbatus(red harvester ant)(info)GCF_000187915.1

Formicinae

Lasiini

Anoplolepis

•Anoplolepis gracilipes(ant A.gracilipes (2025))(info)GCF_047496725.1

Nylanderia

Nylanderia fulva

•Nylanderia fulva(ant N.fulva (TAMU-Nful-2015 v1.1 2019))(info)GCF_005281655.2

•Nylanderia fulva(ant N.fulva (TAMU-Nful-2015 v1.0 2019))(info)GCF_005281655.1

Formicini

Cataglyphis

•Cataglyphis hispanica(ant C.hispanica (Lineage 1 2022))(info)GCF_021464435.1

Formica

•Formica exsecta(ant F.exsecta)(info)GCF_003651465.1

Polyergus

•Polyergus mexicanus(ant P.mexicanus (NDT 795.1 2023))(info)GCF_030449975.1

Camponotini

Camponotus

•Camponotus vicinus(ant C.vicinus (PSW18456_S1 2022))(info)GCA_025532165.1

•Camponotus floridanus(Florida carpenter ant)(info)GCF_003227725.1

Ponerinae

Ponerini

Dinoponera

•Dinoponera quadriceps(ant D.quadriceps)(info)GCF_001313825.1

Odontomachus

•Odontomachus brunneus(ant O.brunneus)(info)GCF_010583005.1

Harpegnathos

Harpegnathos saltator

•Harpegnathos saltator(Jerdon's jumping ant (DR-91 v8.6 2018))(info)GCF_003227715.2

•Harpegnathos saltator(Jerdon's jumping ant (DR-91 v8.5 2018))(info)GCF_003227715.1

Pseudomyrmecinae

Pseudomyrmex

•Pseudomyrmex gracilis(ant P.gracilis)(info)GCF_002006095.1

Dolichoderinae

Linepithema

Linepithema humile

•Linepithema humile(Argentine ant)(info)GCF_000217595.1

•Linepithema humile(Argentine ant (Giens D197 2024))(info)GCF_040581485.1

Dorylinae

Ooceraea

•Ooceraea biroi(clonal raider ant)(info)GCF_003672135.1

•Vespa mandarinia(Asian giant hornet)(info)GCF_014083535.2

•Vespa crabro(European hornet (2022))(info)GCF_910589235.1

•Vespa velutina(wasp V.velutina)(info)GCF_912470025.1

Vespula

•Vespula vulgaris(wasp V.vulgaris (2021))(info)GCF_905475345.1

•Vespula pensylvanica(western yellowjacket)(info)GCF_014466175.1

Polistinae

Polistini

Polistes

•Polistes fuscatus(common paper wasp)(info)GCF_010416935.1

•Polistes dominula(European paper wasp)(info)GCF_001465965.1

•Polistes canadensis(red paper wasp)(info)GCF_001313835.1

•Prorops nasuta(wasps, P.nasuta (Cenicafe-Biocafe 2022))(info)GCF_024137725.1

•Cotesia typhae(ant C.typhae (Kobodo isofemale line 2021))(info)GCF_013202065.1

•Cotesia glomerata(wasp C.glomerata (CgM1 2021))(info)GCF_020080835.1

Microplitis

Microplitis demolitor

•Microplitis demolitor(wasp M.demolitor (Queensland-Clemson 2015))(info)GCF_000572035.2

•Microplitis demolitor(wasp M.demolitor (Queensland-Clemson2020A 2023))(info)GCF_026212275.2

•Microplitis mediator(wasp M.mediator (UGA2020A 2023))(info)GCF_029852145.1

Aphidiinae

Aphidius

•Aphidius gifuensis(wasp A.gifuensis)(info)GCF_014905175.1

Cheloninae

Chelonus

•Chelonus insularis(wasp C.insularis)(info)GCF_013357705.1

Opiinae

Diachasma

•Diachasma alloeum(wasp D.alloeum)(info)GCF_001412515.2

Fopius

•Fopius arisanus(wasp F.arisanus)(info)GCF_000806365.1

Diachasmimorpha

•Diachasmimorpha longicaudata(wasps, D.longicaudata (KC_UGA_2023 2023))(info)GCF_034640455.1

•Venturia canescens(wasp V.canescens)(info)GCF_019457755.1

•Nasonia vitripennis(jewel wasp)(info)GCF_009193385.2

•Nasonia vitripennis(jewel wasp (AsymCX 2012))(info)GCA_000002325.2

Encyrtidae

Encyrtinae

Copidosoma

•Copidosoma floridanum(wasp C.floridanum)(info)GCF_000648655.2

Ceratosolen solmsi marchali

•Ceratosolen solmsi marchali(wasp C.solmsi marchali (v2 2013))(info)GCF_000503995.2

•Ceratosolen solmsi marchali(wasp C.solmsi marchali (v1 2013))(info)GCF_000503995.1

Eulophidae

Tetrastichinae

Phymastichus

•Phymastichus coffea(wasp P.coffea (CEN01 2022))(info)GCF_024137745.1

Trichogrammatidae

Trichogramma

•Trichogramma pretiosum(wasp T.pretiosum)(info)GCF_000599845.2

•Belonocnema kinseyi(wasp B.treatae)(info)GCF_010883055.1

Figitidae

Eucoilinae

Leptopilina

•Leptopilina boulardi(wasp L.boulardi (dan_hultmark-lab 2021))(info)GCF_019393585.1

•Leptopilina heterotoma(wasp L.heterotoma)(info)GCF_015476425.1

•Athalia rosae(coleseed sawfly (2021 Wellcome Sanger))(info)GCF_917208135.1

•Athalia rosae(coleseed sawfly (CS-ADULT 2019 i5k))(info)GCF_000344095.2

Diprionidae

Diprioninae

Diprion

•Diprion similis(hymenopterans (iyDipSimi1 2021))(info)GCF_021155765.1

Neodiprion

•Neodiprion fabricii(hymenopterans (iyNeoFabr1 2021))(info)GCF_021155785.1

•Neodiprion virginianus(hymenopterans (iyNeoVirg1 2022))(info)GCF_021901495.1

Neodiprion lecontei

•Neodiprion lecontei(redheaded pine sawfly)(info)GCF_001263575.1

•Neodiprion lecontei(redheaded pine sawfly (iyNeoLeco1 2022))(info)GCF_021901455.1

Neodiprion pinetum

•Neodiprion pinetum(white pine sawfly (iyNeoPine1 2021))(info)GCF_021155775.1

•Neodiprion pinetum(white pine sawfly (iyNeoPine1 2024))(info)GCF_021155775.2

Orussoidea

Orussidae

Orussus

•Orussus abietinus(hymenopterans O.abietinus)(info)GCF_000612105.2

•Cephus cinctus(wheat stem sawfly (v2 2014))(info)GCF_000341935.2

•Cephus cinctus(wheat stem sawfly (v1 2014))(info)GCF_000341935.1

•Anoplophora glabripennis(Asian longhorned beetle)(info)GCF_000390285.2

•Diabrotica undecimpunctata(beetle D.undecimpunctata (CICGRU primary hap 2024))(info)GCF_040954645.1

Diabrotica virgifera

Diabrotica virgifera virgifera

•Diabrotica virgifera virgifera(western corn rootworm (2022))(info)GCF_917563875.1

•Diabrotica virgifera virgifera(western corn rootworm (Ped12-6-A-3 2018))(info)GCF_003013835.1

Galerucini

Atysites

Diorhabda

•Diorhabda carinata(larger tamarisk beetle (Uzbek primary hap 2023))(info)GCA_029229535.1

•Diorhabda elongata(Mediterranean tamarisk beetle (Crete 2022))(info)GCA_026230145.1

•Diorhabda carinulata(northern tamarisk beetle (Delta primary hap 2022))(info)GCF_026250575.1

•Diorhabda sublineata(subtropical tamarisk beetle (icDioSubl1.1 primary hap 2022))(info)GCF_026230105.1

Chrysomelinae

Doryphorini

Leptinotarsa

Leptinotarsa decemlineata

•Leptinotarsa decemlineata(Colorado potato beetle)(info)GCF_000500325.1

•Leptinotarsa decemlineata(Colorado potato beetle (2022))(info)GCF_025532065.1

Chrysomelini

Plagiodera

•Plagiodera versicolora(willow leaf (Leaf beetle CT-2024 2024))(info)GCA_037013635.1

•Euwallacea fornicatus(beetle E.fornicatus (EFF26 2024))(info)GCF_040115645.1

•Euwallacea similis(beetle E.similis (ESF13 2024))(info)GCF_039881205.1

Dendroctonus

Dendroctonus ponderosae

•Dendroctonus ponderosae(mountain pine beetle (2013))(info)GCA_000355655.1

•Dendroctonus ponderosae(mountain pine beetle (2013))(info)GCF_000355655.1

•Dendroctonus ponderosae(mountain pine beetle (2021))(info)GCF_020466585.1

•Anthonomus grandis grandis(boll weevil (2022))(info)GCF_022605725.1

Dryophthorinae

Rhynchophorus

Rhynchophorus ferrugineus

•Rhynchophorus ferrugineus(red palm weevil (AA-2017 primary hap 2020))(info)GCA_014462685.1

•Rhynchophorus ferrugineus(red palm weevil (W39M 2023))(info)GCF_030347505.1

Sitophilus

•Sitophilus oryzae(rice weevil)(info)GCF_002938485.1

Brentidae

Cyladinae

Cylas

•Cylas formicarius(sweet potato weevil (icCylForm1 primary hap 2023))(info)GCF_029955315.1

•Harmonia axyridis(beetle H.axyridis)(info)GCF_914767665.1

Coccinella

•Coccinella septempunctata(seven-spotted ladybird)(info)GCF_907165205.1

•Zophobas morio(beetle Z.morio (UQ-CSIRO AGI-343-1 2024))(info)GCF_036711695.1

Tenebrio

Tenebrio molitor

•Tenebrio molitor(yellow mealworm (2024))(info)GCF_963966145.1

•Tenebrio molitor(yellow mealworm (primary hap 2024))(info)GCA_963966145.1

Tenebrionidae incertae sedis

Tribolium

•Tribolium madens(black flour beetle)(info)GCF_015345945.1

Tribolium castaneum

•Tribolium castaneum(red flour beetle)(info)GCF_000002335.3

•Tribolium castaneum(red flour beetle (GA2 primary hap 2023))(info)GCF_031307605.1

•Aethina tumida(small hive beetle (BRL-Maryland 2017))(info)GCF_001937115.1

•Aethina tumida(small hive beetle (Nest 87 primary hap 2022))(info)GCF_024364675.1

•Dalotia coriaria(beetle D.coriaria (IRGN ID8LTWV9N9 2023))(info)GCF_025399875.1

Silphidae

Nicrophorinae

Nicrophorus

•Nicrophorus vespilloides(beetle N.vespilloides)(info)GCF_001412225.1

•Onthophagus taurus(beetle O.taurus)(info)GCF_000648695.1

•Onthophagus taurus(beetle O.taurus (NC 2024))(info)GCF_036711975.1

•Photinus pyralis(common eastern firefly)(info)GCF_008802855.1

•Agrilus planipennis(emerald ash borer)(info)GCF_000699045.2

•Ctenocephalides felis(cat flea)(info)GCF_003426905.1

•Chrysoperla carnea(common green lacewing)(info)GCF_905475395.1

•Periplaneta americana(American cockroach (PAMFEO1 primary hap 2024))(info)GCF_040183065.1

•Cryptotermes secundus(termite C.secundus)(info)GCF_002891405.2

•Zootermopsis nevadensis(termite Z.nevadensis)(info)GCF_000696155.1

•Blattella germanica(German cockroach (American Cyanamid = Orlando Normal EBB2017 2018))(info)GCA_003018175.1

•Blattella germanica(German cockroach (v2.0 2018))(info)GCA_000762945.2

•Schistocerca americana(American grasshopper (TAMUIC-IGC-003095 2022))(info)GCF_021461395.2

•Schistocerca piceifrons(Central American locust (TAMUIC-IGC-003096 2022))(info)GCF_021461385.2

•Schistocerca gregaria(desert locust (iqSchGreg1 primary hap 2022))(info)GCF_023897955.1

Schistocerca serialis

•Schistocerca serialis cubense(grasshoppers S.serialis cubense (TAMUIC-IGC-003099 2022))(info)GCF_023864345.2

•Schistocerca cancellata(South American locust (TAMUIC-IGC-003103 2022))(info)GCF_023864275.1

•Schistocerca nitens(vagrant locust (TAMUIC-IGC-003100 2022))(info)GCF_023898315.1

•Acheta domesticus(house cricket (YG1991 2020))(info)GCA_014858955.1

Gryllus

•Gryllus bimaculatus(two-spotted cricket (white eyes 2021))(info)GCA_017312745.1

•Anabrus simplex(Mormon cricket (iqAnaSimp1 primary hap 2024))(info)GCF_040414725.1

•Bacillus rossius redtenbacheri(walking B.rossius redtenbacheri (Brsri 2023))(info)GCF_032445375.1

•Medauroidea extradentata(walking M.extradentata (BJ-2015 2018))(info)GCA_003012365.1

•Cinara cedri(aphids C.cedri (2019))(info)GCA_902439185.1

Drepanosiphinae

Drepanosiphum

•Drepanosiphum platanoidis(aphids D.platanoidis (primary hap 2023))(info)GCA_948098885.1

Aphidinae

Aphidini

Melanaphis

•Melanaphis sacchari(aphids M.sacchari (LSU 2018))(info)GCF_002803265.2

Rhopalosiphum

Rhopalosiphum padi complex

Rhopalosiphum padi

•Rhopalosiphum padi(bird cherry-oat aphid (Rp-YL-2016 2021))(info)GCA_019425515.1

•Rhopalosiphum padi(bird cherry-oat aphid (XX-2018 2021))(info)GCF_020882245.1

•Rhopalosiphum maidis(corn leaf aphid)(info)GCF_003676215.2

Aphis

Aphis gossypii

•Aphis gossypii(cotton aphid (2022))(info)GCA_917880025.4

•Aphis gossypii(cotton aphid (AGOS-L3 2019))(info)GCF_004010815.1

•Aphis gossypii(cotton aphid (Hap1 2021))(info)GCF_020184175.1

•Aphis gossypii(cotton aphid (Hap3 2021))(info)GCA_020184165.1

•Aphis glycines(soybean aphid (OH 2020))(info)GCA_009928515.1

Macrosiphini

Sitobion

•Sitobion miscanthi(aphids S.miscanthi (Langfang-1 2019))(info)GCA_008086715.1

Sitobion avenae

•Sitobion avenae(English grain aphid (Sa-YL-2016 2021))(info)GCA_019425605.1

•Sitobion avenae(English grain aphid (SaG1 2022))(info)GCA_022419445.1

Myzus

•Myzus persicae(green peach aphid)(info)GCF_001856785.1

Acyrthosiphon

Acyrthosiphon pisum

•Acyrthosiphon pisum(pea aphid (AL4f v2 2019))(info)GCF_005508785.2

•Acyrthosiphon pisum(pea aphid (LSR1 2010))(info)GCA_000142985.2

•Acyrthosiphon pisum(pea aphid (AL4f v1 2019))(info)GCF_005508785.1

Aulacorthum

•Aulacorthum solani(potato aphid (AS-CPRI-2016 2019))(info)GCA_008528875.1

Macrosiphum

•Macrosiphum rosae(rose aphid (ROC1 2021))(info)GCA_016617965.1

Metopolophium

Metopolophium dirhodum

•Metopolophium dirhodum(rose-grain aphid (CAU 2021 refseq))(info)GCF_019925205.1

•Metopolophium dirhodum(rose-grain aphid (CAU 2021 genbank))(info)GCA_019925205.1

Diuraphis

Diuraphis noxia

•Diuraphis noxia(Russian wheat aphid (2015))(info)GCA_001465515.1

•Diuraphis noxia(Russian wheat aphid (RWA2 2015))(info)GCF_001186385.1

Eriosomatinae

Fordini

Schlechtendalia

•Schlechtendalia chinensis(horned gall aphid (SC2021 2021))(info)GCA_019022885.1

Eriosomatini

Eriosoma

•Eriosoma lanigerum(woolly apple aphid (AA05 2020))(info)GCA_013282895.1

Chaitophorinae

Sipha

•Sipha flava(yellow sugarcane aphid)(info)GCF_003268045.1

Hormaphididae

Hormaphidini

Hormaphis

•Hormaphis cornu(aphids H.cornu (80 2021))(info)GCA_017140985.1

Phylloxeroidea

Phylloxeridae

Daktulosphaira

Daktulosphaira vitifoliae

•Daktulosphaira vitifoliae(grape phylloxera (Bord-2020 2022 refseq))(info)GCF_025091365.1

•Daktulosphaira vitifoliae(grape phylloxera (Bord-2020 2022 genbank))(info)GCA_025091365.1

Adelgidae

Adelges

Gilletteella

•Adelges cooleyi(spruce gall adelgid (2022))(info)GCF_023614345.1

•Diaphorina citri(Asian citrus psyllid)(info)GCF_000475195.1

Coccoidea

Pseudococcidae

Planococcus

•Planococcus citri(citrus mealybug (primary hap 2023))(info)GCF_950023065.1

•Bemisia tabaci(sweet potato whitefly)(info)GCF_001854935.1

•Bemisia tabaci(sweet potato whitefly (2022))(info)GCF_918797505.1

•Macrosteles quadrilineatus(aster leafhopper (MER2022 2023))(info)GCF_028750875.1

Cicadellinae

Proconiini

Homalodisca

•Homalodisca vitripennis(glassy-winged sharpshooter (AUS2020 2022))(info)GCF_021130785.1

•Nilaparvata lugens(brown planthopper (NLH13 2014))(info)GCF_000757685.1

•Nilaparvata lugens(brown planthopper (v2 BPH 2020))(info)GCF_014356525.2

•Nilaparvata lugens(brown planthopper (v1 BPH 2020 genbank))(info)GCA_014356525.1

•Nilaparvata lugens(brown planthopper (v1 BPH 2020 refseq))(info)GCF_014356525.1

Sogatella

•Sogatella furcifera(white-backed planthopper (WBPH 2020))(info)GCA_014356515.1

Criomorphinae

Laodelphax

Laodelphax striatellus

•Laodelphax striatellus(small brown planthopper (Lst14 2019))(info)GCA_003335185.2

•Laodelphax striatellus(small brown planthopper (SBPH 2020))(info)GCA_014465815.1

•Lycorma delicatula(spotted lanternfly (Av1 hap1 2025 genbank))(info)GCA_047948215.1

•Lycorma delicatula(spotted lanternfly (Av1 hap1 2025 refseq))(info)GCF_047948215.1

•Lycorma delicatula(spotted lanternfly (Av1 hap2 2025))(info)GCA_047948205.1

•Cimex lectularius(bed bug)(info)GCF_000648675.2

•Apolygus lucorum(bugs A.lucorum (12Hb 2020))(info)GCA_009739505.2

•Rhodnius prolixus(bugs R.prolixus (2015))(info)GCA_000181055.3

•Rhodnius prolixus(bugs R.prolixus (KJV_2025 2025))(info)GCF_049639745.1

Triatoma

•Triatoma infestans(bugs T.infestans (FIOC_28 2020))(info)GCA_011037195.1

•Halyomorpha halys(brown marmorated stink bug)(info)GCF_000696795.2

•Halyomorpha halys(brown marmorated stink bug (HHAL.00 2019))(info)GCF_000696795.3

•Oncopeltus fasciatus(milkweed bug (OFAS.00 2018))(info)GCA_000696205.2

•Gerris buenoi(water strider (GBUE.00 2018))(info)GCA_001010745.2

Megalurothrips usitatus

•Megalurothrips usitatus(bean blossom thrips (cailab_2022a 2022))(info)GCA_026979955.1

•Megalurothrips usitatus(bean blossom thrips (HL-2024a 2024))(info)GCA_043789555.1

Thrips

•Thrips palmi(thrips T.palmi)(info)GCF_012932325.1

Frankliniella

Frankliniella occidentalis

•Frankliniella occidentalis(western flower thrips (v3 FOCC.00 2019))(info)GCF_000697945.3

•Frankliniella occidentalis(western flower thrips (v2 FOCC.00 2017))(info)GCF_000697945.2

•Pediculus humanus corporis(human body louse)(info)GCF_000006295.1

Ischnocera

Philopteridae

Columbicola

•Columbicola columbae(slender pigeon louse (jgb_00001 2021))(info)GCA_016920875.1

•Hetaerina americana(American ruby spot damselfly (1083.01 alternate hap 2022))(info)GCA_022747625.1

•Hetaerina americana(American ruby spot damselfly (1083.01 primary hap 2022))(info)GCA_022747635.1

•Hetaerina americana(American ruby spot damselfly (primary hap 2022))(info)GCF_022747635.1

Coenagrionoidea

Coenagrionidae

Ischnura

•Ischnura elegans(damselflies)(info)GCF_921293095.1

•Cloeon dipterum(fly C.dipterum (primary hap 2023))(info)GCF_949628265.1

•Cloeon dipterum(mayflies C.dipterum (2020))(info)GCA_902829235.1

Neocloeon

•Neocloeon triangulifer(mayflies N.triangulifer (White Clay Creek 2 clone 2023))(info)GCF_031216515.1

•Folsomia candida(springtails F.candida)(info)GCF_002217175.1

•Homarus americanus(American lobster)(info)GCF_018991925.1

•Homarus gammarus(European lobster (2023))(info)GCA_958450375.1

Parastacoidea

Parastacidae

Cherax

Cherax quadricarinatus

•Cherax quadricarinatus(Australian red claw crayfish (HC-2022 2022))(info)GCF_026875155.1

•Cherax quadricarinatus(Australian red claw crayfish (ZL_2023a 2024))(info)GCF_038502225.1

•Procambarus virginalis(crustacean P.virginalis (Petshop 2018 2021))(info)GCA_020271785.1

Procambarus clarkii

•Procambarus clarkii(red swamp crayfish (CNS0578487 2024))(info)GCF_040958095.1

•Procambarus clarkii(red swamp crayfish (Jiangsu 2021))(info)GCF_020424385.1

•Eriocheir sinensis(Chinese mitten crab (Jianghai 21 2022))(info)GCF_024679095.1

•Eriocheir sinensis(Chinese mitten crab (nwpu-v1-2020 2020))(info)GCA_013436485.1

•Scylla paramamosain(green mud crab (STU-SP2022 2024))(info)GCF_035594125.1

Portunus

•Portunus trituberculatus(swimming crab)(info)GCF_017591435.1

•Palaemon carinicauda(crustacean P.carinicauda (YSFRI2023 2024))(info)GCF_036898095.1

Macrobrachium

•Macrobrachium rosenbergii(giant freshwater prawn (ZJJX-2024 2024))(info)GCF_040412425.1

Macrobrachium nipponense

•Macrobrachium nipponense(oriental river prawn (v2 FS-2020 2020 refseq))(info)GCF_015104395.2

•Macrobrachium nipponense(oriental river prawn (v1 FS-2020 2020 genbank))(info)GCA_015104395.1

•Panulirus ornatus(crustacean P.ornatus (Po-2019 2024))(info)GCF_036320965.1

•Penaeus monodon(black tiger shrimp (v2 SGIC_2016 2020))(info)GCF_015228065.2

•Penaeus monodon(black tiger shrimp (v1 SGIC_2016 2020))(info)GCF_015228065.1

•Penaeus indicus(crustacean P.indicus (CIBA_PI_04 2021))(info)GCF_018983055.1

•Penaeus japonicus(crustacean P.japonicus)(info)GCF_017312705.1

•Penaeus chinensis(fleshy prawn (Huanghai No. 1 2021))(info)GCF_019202785.1

Penaeus vannamei

•Penaeus vannamei(Pacific white shrimp (JL-2024 2024))(info)GCF_042767895.1

•Penaeus vannamei(Pacific white shrimp (Kehai No.1 2018))(info)GCF_003789085.1

•Hyalella azteca(amphipods H.azteca (HAZT.00-mixed v2.0.2 2019))(info)GCF_000764305.2

•Hyalella azteca(amphipods H.azteca (HAZT.00-mixed v2.0 2016))(info)GCF_000764305.1

Hyaloidea

Hyalidae

Parhyale

•Parhyale hawaiensis(amphipods P.hawaiensis (Chicago-F 2018))(info)GCA_001587735.2

•Oratosquilla oratoria(Japanese mantis shrimp (Oo_2021 2025))(info)GCF_046742065.1

•Amphibalanus amphitrite(crustacean A.amphitrite)(info)GCF_019059575.1

Pollicipedomorpha

Pollicipedidae

Pollicipes

Pollicipes pollicipes

•Pollicipes pollicipes(crustacean P.pollicipes (v3 AB1234 2020))(info)GCF_011947565.3

•Pollicipes pollicipes(crustacean P.pollicipes (v2 AB1234 2020))(info)GCF_011947565.2

•Eurytemora carolleeae(crustacean E.affinis)(info)GCF_000591075.1

Lepeophtheirus salmonis

•Lepeophtheirus salmonis(salmon louse (2023))(info)GCF_016086655.4

•Lepeophtheirus salmonis(salmon louse (v1.2 2020))(info)GCF_016086655.3

•Lepeophtheirus salmonis(salmon louse (v1.1 2020))(info)GCF_016086655.2

Harpacticoida

Harpacticidae

Tigriopus

Tigriopus californicus

•Tigriopus californicus(tidepool copepod (San Diego 2019 refseq))(info)GCF_007210705.1

•Tigriopus californicus(tidepool copepod (San Diego 2019 genbank))(info)GCA_007210705.1

•Daphnia pulex(common water flea (2011))(info)GCA_000187875.1

•Daphnia pulex(common water flea (KAP4 2021))(info)GCF_021134715.1

Daphnia carinata

•Daphnia carinata(crustacean D.carinata (v2 CSIRO-1 2023))(info)GCF_022539665.2

•Daphnia carinata(crustacean D.carinata (v1 CSIRO-1 2022))(info)GCF_022539665.1

Daphnia magna

•Daphnia magna(crustacean D.magna (NIES Sungkyunkwan U. 2021))(info)GCF_020631705.1

•Daphnia magna(crustacean D.magna (SK Sungkyunkwan U. 2019 refseq))(info)GCF_003990815.1

•Daphnia magna(water flea D.magna (LRV0_1 2023))(info)GCA_030254905.1

•Daphnia magna(crustacean D.magna (SK Sungkyunkwan U. 2019 genbank))(info)GCA_003990815.1

•Daphnia pulicaria(crustacean D.pulicaria (SC F1-1A 2022))(info)GCF_021234035.1

Notostraca

Triopsidae

Lepidurus

•Lepidurus packardi(vernal pool tadpole shrimp L.packardi (LEPA_1 2022))(info)GCA_023053545.1

•Artemia franciscana(crustacean A.franciscana (2023))(info)GCF_032884065.1

•Artemia franciscana(crustacean A.franciscana (sdv2016 2021))(info)GCA_019857095.1

Branchinectidae

Branchinecta

•Branchinecta lindahli(vernal pool fairy shrimp B.lindahli (BRLI_1 2022))(info)GCA_023053555.1

•Branchinecta lynchi(vernal pool fairy shrimp B.lynchi (BRLY_001 2022))(info)GCA_023053575.1

•Dermacentor variabilis(American dog tick (Ectoservices 2025))(info)GCF_050947875.1

Dermacentor albipictus

•Dermacentor albipictus(mite/tick D.albipictus (v1 Rhodes 1998 colony primary hap 2024))(info)GCF_038994185.1

•Dermacentor albipictus(mite/tick D.albipictus (v2 Rhodes 1998 colony primary hap 2024))(info)GCF_038994185.2

Dermacentor andersoni

•Dermacentor andersoni(mite/tick D.andersoni (primary hap 2024))(info)GCF_023375885.2

•Dermacentor andersoni(mite/tick D.andersoni (qqDerAnde1 alternate hap 2022))(info)GCA_023375915.1

•Dermacentor andersoni(mites & ticks D.andersoni (primary hap 2022))(info)GCF_023375885.1

Dermacentor silvarum

•Dermacentor silvarum(mites & ticks D.silvarum (v2 Dsil-2018 2022))(info)GCF_013339745.2

•Dermacentor silvarum(tick D.silvarum (v1 2020))(info)GCF_013339745.1

Rhipicephalus

Rhipicephalus sanguineus group

Rhipicephalus sanguineus

•Rhipicephalus sanguineus(brown dog tick (v1.4 Rsan-2018 2022))(info)GCF_013339695.2

•Rhipicephalus sanguineus(brown dog tick (v1 Rsan-2018 2020))(info)GCF_013339695.1

Boophilus

•Rhipicephalus annulatus(mite/tick R.annulatus (Klein Grass 2020))(info)GCA_013436015.1

Rhipicephalus microplus

•Rhipicephalus microplus(southern cattle tick (Deutch F79 2024))(info)GCF_043290135.1

•Rhipicephalus microplus(southern cattle tick (Deutsch 2012))(info)GCA_000181235.2

•Rhipicephalus microplus(southern cattle tick (Deutsch 2020))(info)GCA_013435995.1

•Rhipicephalus microplus(southern cattle tick (Rmic-2018 2020 refseq))(info)GCF_013339725.1

•Rhipicephalus microplus(southern cattle tick (Rmic-2018 2020 genbank))(info)GCA_013339725.1

Ixodinae

Ixodes

Ixodes scapularis

•Ixodes scapularis(black-legged tick (2018))(info)GCA_002892825.2

•Ixodes scapularis(black-legged tick (JCVI 2018))(info)GCF_002892825.2

•Ixodes scapularis(black-legged tick (MGNL1 2023))(info)GCA_031841145.1

•Ixodes scapularis(black-legged tick (U.Maryland v2 2021))(info)GCF_016920785.2

•Ixodes scapularis(black-legged tick (Wikel colony 2008 refseq))(info)GCF_000208615.1

•Ixodes scapularis(black-legged tick (U.Maryland v1 2021))(info)GCF_016920785.1

•Ixodes scapularis(black-legged tick (Wikel colony 2008 genbank))(info)GCA_000208615.1

•Ixodes ricinus(castor bean tick (Charles River 2016))(info)GCA_000973045.2

•Ixodes persulcatus(taiga tick (Iper-2018 2020))(info)GCA_013358835.2

Amblyomminae

Amblyomma

•Amblyomma maculatum(Gulf Coast tick (SK-2019 2022))(info)GCA_023969395.1

Haemaphysalinae

Haemaphysalis

Haemaphysalis longicornis

•Haemaphysalis longicornis(longhorned tick (HaeL-2018 2020))(info)GCA_013339765.2

•Haemaphysalis longicornis(longhorned tick (Haplotype H1 2025))(info)GCF_048455015.1

Hyalomminae

Hyalomma

•Hyalomma asiaticum(mite/tick H.asiaticum (Hyas-2018 2020))(info)GCA_013339685.2

Argasidae

Ornithodorinae

Ornithodoros

•Ornithodoros turicata(mite/tick O.turicata (Travis 2024))(info)GCF_037126465.1

•Varroa destructor(honeybee mite (v2 2017))(info)GCF_002443255.2

•Varroa destructor(honeybee mite (v1 2017))(info)GCF_002443255.1

Varroa jacobsoni

•Varroa jacobsoni(mites & ticks V.jacobsoni (v2 VJ856 2017))(info)GCF_002532875.2

•Varroa jacobsoni(mites & ticks V.jacobsoni (v1 VJ856 2017))(info)GCF_002532875.1

Galendromus occidentalis

•Galendromus occidentalis(western predatory mite (v1.1 2012))(info)GCF_000255335.2

•Galendromus occidentalis(western predatory mite (v1.0 2012))(info)GCF_000255335.1

Dermatophagoides farinae

•Dermatophagoides farinae(American house dust mite (JKM2019 2021))(info)GCF_020809275.1

•Dermatophagoides farinae(American house dust mite (YC_2012a 2022))(info)GCF_024713945.1

Dermatophagoides pteronyssinus

•Dermatophagoides pteronyssinus(European house dust mite (airmid 2017))(info)GCF_001901225.1

•Dermatophagoides pteronyssinus(European house dust mite (colony J.1.1.1.1 2023))(info)GCF_027571235.1

•Sarcoptes scabiei(mite/tick S.scabiei (Arlian Lab 2015))(info)GCA_000828355.1

•Oppia nitens(mites & ticks O.nitens (2023))(info)GCF_028296485.1

•Panonychus citri(citrus red mite (McGregor SS 2020))(info)GCF_014898815.1

Tetranychus

Tetranychus urticae

•Tetranychus urticae(two-spotted spider mite)(info)GCF_000239435.1

•Tetranychus urticae(two-spotted spider mite (2011))(info)GCA_000239435.1

Tenuipalpidae

Brevipalpus

•Brevipalpus obovatus(mite/tick B.obovatus (LL-2025a 2025))(info)GCF_050580445.1

•Leptotrombidium deliense(scrub typhus mite (UoL-UT 2018))(info)GCA_003675905.2

•Centruroides sculpturatus(bark scorpion)(info)GCF_000671375.1

•Centruroides vittatus(scorpions C.vittatus (TY-2023 2023))(info)GCF_030686945.1

Parasteatoda tepidariorum

•Parasteatoda tepidariorum(common house spider (v3 Goettingen 2019 refseq))(info)GCF_000365465.3

•Parasteatoda tepidariorum(common house spider (YZ-2023 2024))(info)GCF_043381705.1

•Parasteatoda tepidariorum(common house spider (v2 Geottingen 2017))(info)GCF_000365465.2

•Parasteatoda tepidariorum(common house spider (v3 Goettingen 2019 genbank))(info)GCA_000365465.3

Nephilidae

Trichonephila

•Trichonephila clavipes(golden silk orb-weaver (2021))(info)GCA_019973935.1

Tetragnathidae

Tetragnatha

Tetragnatha versicolor

•Tetragnatha versicolor(longjawed orb weaver (CCGP_RG_IND1 alternate hap 2022))(info)GCA_024610695.1

•Tetragnatha versicolor(longjawed orb weaver (CCGP_RG_IND1 primary hap 2022))(info)GCA_024610705.1

Araneidae

Argiope

•Argiope bruennichi(wasp spider (primary hap 2022))(info)GCF_947563725.1

Deinopoidea

Uloboridae

Uloborus

•Uloborus diversus(spiders U.diversus (005 2022))(info)GCF_026930045.1

•Stegodyphus dumicola(velvet spider S.dumicola (v2 Namibia, Etosha AA2019 2020))(info)GCF_010614865.2

•Stegodyphus dumicola(velvet spider S.dumicola (v1 Namibia, Etosha 2020))(info)GCF_010614865.1

•Limulus polyphemus(Atlantic horseshoe crab)(info)GCF_000517525.1

•Limulus polyphemus(Atlantic horseshoe crab (2014))(info)GCA_000517525.1

•Limulus polyphemus(Atlantic horseshoe crab (EPB Lpoly Male 20170608 2025))(info)GCA_047678235.1

Tachypleus

•Tachypleus tridentatus(Chinese horseshoe crab (NWPU-2018 2019))(info)GCF_004210375.1

•Hypsibius dujardini(H.dujardini tardigrades (Sciento 2016))(info)GCA_001579985.1

•Hypsibius exemplaris(H.dujardini tardigrades (Z151 2017))(info)GCA_002082055.1

Ramazzottiidae

Ramazzottius

•Ramazzottius varieornatus(R.varieornatus (YOKOZUNA-1 2016 tardigrades))(info)GCA_001949185.1

Isohypsibioidea

Isohypsibiidae

Isohypsibius

•Isohypsibius dastychi(I.dastychi tardigrades (Gr-Tar-00864 2023))(info)GCA_034696485.1

Macrobiotoidea

Macrobiotidae

Paramacrobiotus

•Paramacrobiotus metropolitanus(P.metropolitanus (2021 tardigrades))(info)GCF_019649055.1

Paramacrobiotus richtersi group

•Paramacrobiotus richtersi(P.richtersi tardigrades (Gr-Tar-00820 2023))(info)GCA_034698045.1

•Epiperipatus broadwayi(Trinidad velvet worm (MCZ IZ 143930 2023))(info)GCA_028023455.1

•Loa loa(African eye worm (CAT 2014))(info)GCA_000733445.1

•Loa loa(eye worm)(info)GCF_000183805.2

Brugia

Brugia malayi

•Brugia malayi(B.malayi (v4 2019 agent of lymphatic filariasis))(info)GCF_000002995.4

•Brugia malayi(B.malayi (v3 2008 agent of lymphatic filariasis))(info)GCF_000002995.3

•Brugia pahangi(nematode B.pahangi (2018))(info)GCA_900618355.1

•Brugia timori(nematode B.timori (2018))(info)GCA_900618025.1

Dirofilaria

Dirofilaria immitis

•Dirofilaria immitis(dog heartworm nematode (2013))(info)GCA_001077395.1

•Dirofilaria immitis(dog heartworm nematode (North_Portugal 2022))(info)GCA_024305405.1

Acanthocheilonema

•Acanthocheilonema viteae(nematode A.viteae (2018))(info)GCA_900537255.1

Cercopithifilaria

•Cercopithifilaria johnstoni(nematode C.johnstoni (2021))(info)GCA_916381525.1

Elaeophora

•Elaeophora elaphi(nematode E.elaphi (2013))(info)GCA_000499685.1

Litomosoides

•Litomosoides sigmodontis(nematode L.sigmodontis (2018))(info)GCA_900537275.1

Onchocerca

Onchocerca flexuosa

•Onchocerca flexuosa(nematode O.flexuosa (2018))(info)GCA_900618345.1

•Onchocerca flexuosa(nematode O.flexuosa (Red Deer 2017))(info)GCA_002249935.1

Onchocerca ochengi

•Onchocerca ochengi(nematode O.ochengi (2016))(info)GCA_000950515.2

•Onchocerca ochengi(nematode O.ochengi (2018))(info)GCA_900537205.1

•Onchocerca volvulus(nematode O.volvulus (2014))(info)GCA_000499405.2

Wuchereria

Wuchereria bancrofti

•Wuchereria bancrofti(Wuchereria bancrofti (2018))(info)GCA_900622535.1

•Wuchereria bancrofti(Wuchereria bancrofti (PNG22 2016))(info)GCA_001555675.1

Setariidae

Setaria

•Setaria digitata(nematode S.digitata (RSCHEM2018 2018))(info)GCA_003640385.1

Spiruroidea

Gongylonematidae

Gongylonema

•Gongylonema pulchrum(nematode G.pulchrum (2018))(info)GCA_900617915.1

Thelazioidea

Thelaziidae

Thelazia

•Thelazia callipaeda(thelaziosis nematode (2018))(info)GCA_900618365.1

•Toxocara canis(dog roundworm (2018))(info)GCA_900622545.1

•Toxocara canis(dog roundworm (PN_DK_2014 2014))(info)GCA_000803305.1

Anisakidae

Anisakis

Anisakis simplex complex

•Anisakis simplex(herring worm (2018))(info)GCA_900617985.1

Ascarididae

Parascaris

•Parascaris univalens(nematode P.univalens (PG01 2017))(info)GCA_002259205.1

Ascaris

Ascaris suum

•Ascaris suum(pig roundworm (2012))(info)GCA_000298755.1

•Ascaris suum(pig roundworm (AG01 2017))(info)GCA_000187025.3

Dracunculoidea

Dracunculidae

Dracunculus

•Dracunculus medinensis(Guinea worm (2018))(info)GCA_900625125.1

•Enterobius vermicularis(human pinworm (2018))(info)GCA_900576705.1

•Angiostrongylus costaricensis(American rat lungworm (Costa Rica 2018))(info)GCA_900624975.1

•Angiostrongylus vasorum(French heartworm (ZH-2019-22 2021))(info)GCA_018806985.1

•Angiostrongylus cantonensis(rat lungworm (Guangzhou 2019))(info)GCA_009735665.1

Dictyocaulus

•Dictyocaulus viviparus(bovine lungworm (HannoverDv2000 2015))(info)GCA_000816705.1

Parelaphostrongylus

•Parelaphostrongylus tenuis(nematode P.tenuis (MNPRO001-30 2021))(info)GCA_019055375.1

Trichostrongylidae

Haemonchus

Haemonchus contortus

•Haemonchus contortus(barber pole worm (ISE/inbred ISE 2018))(info)GCA_000469685.2

•Haemonchus contortus(barber pole worm (McMaster 2013))(info)GCA_000442195.1

•Haemonchus placei(nematode H.placei (MHpl1 2018))(info)GCA_900617895.1

Teladorsagia

•Teladorsagia circumcincta(nematode T.circumcincta (S 2017))(info)GCA_002352805.1

Strongylidae

Strongylus

•Strongylus vulgaris(bloodworm (2018))(info)GCA_900624965.1

Cylicostephanus

•Cylicostephanus goldi(nematode C.goldi (2018))(info)GCA_900617965.1

Cylicocyclus

•Cylicocyclus nassatus(nematode C.nassatus (Nouzilly 2023))(info)GCA_958299035.1

Oesophagostomum

•Oesophagostomum dentatum(nodular worm (OD-Hann 2014))(info)GCA_000797555.1

Ancylostomatidae

Ancylostomatinae

Ancylostoma

•Ancylostoma caninum(dog hookworm (Baltimore 2018))(info)GCA_003336725.1

Ancylostoma ceylanicum

•Ancylostoma ceylanicum(nematode A.ceylanicum (2013))(info)GCA_000402015.1

•Ancylostoma ceylanicum(nematode A.ceylanicum (HY135 2014))(info)GCA_000688135.1

•Ancylostoma duodenale(nematode A.duodenale (Zhejiang 2015))(info)GCA_000816745.1

Bunostominae

Necator

Necator americanus

•Necator americanus(nematode N.americanus (2013))(info)GCF_000507365.1

•Necator americanus(New World hookworm (2013))(info)GCA_000507365.1

•Necator americanus(New World hookworm (Aroian 2023 genbank))(info)GCA_031761385.1

•Necator americanus(New World hookworm (Aroian 2023 refseq))(info)GCF_031761385.1

Heterorhabditidae

Heterorhabditis

•Heterorhabditis bacteriophora(nematode H.bacteriophora (M31e 2011))(info)GCA_000223415.1

Heligmosomidae

Heligmosomoides

Heligmosomoides polygyrus

•Heligmosomoides polygyrus(nematode H.polygyrus (2018))(info)GCA_900618505.1

•Heligmosomoides polygyrus bakeri(nematode H.polygyrus bakeri (2016))(info)GCA_900096555.1

Nippostrongylus

Nippostrongylus brasiliensis

•Nippostrongylus brasiliensis(nematode N.brasiliensis (2018))(info)GCA_900618405.1

•Nippostrongylus brasiliensis(nematode N.brasiliensis (MIMR 2023))(info)GCA_030553155.1

Rhabditoidea

Rhabditidae

Rhabditidae incertae sedis

Auanema

unclassified Auanema

•Auanema sp. JU1783(nematode A.sp. (JU1783 2022))(info)GCA_943334845.2

Diploscapter

•Diploscapter pachys(nematode D.pachys (PF1309 2017))(info)GCA_002287525.1

Peloderinae

Caenorhabditis

Caenorhabditis afra

•Caenorhabditis afra(nematode C.afra (alternate hap 2023))(info)GCA_963570465.1

•Caenorhabditis afra(nematode C.afra (primary hap 2023))(info)GCA_963570955.1

•Caenorhabditis angaria(nematode C.angaria (PS1010 2010))(info)GCA_000165025.1

•Caenorhabditis auriculariae(nematode C.auriculariae (NKZ352 2022))(info)GCA_904845305.1

•Caenorhabditis becei(nematode C.becei (QG2083 2019))(info)GCA_900536315.3

•Caenorhabditis bovis(nematode C.bovis (2020))(info)GCA_902829315.1

•Caenorhabditis brenneri(nematode C.brenneri (PB2801 2010))(info)GCA_000143925.2

Caenorhabditis briggsae

•Caenorhabditis briggsae(nematode C.briggsae (AF16 CB4 2014))(info)GCF_000004555.2

•Caenorhabditis briggsae(nematode C.briggsae (QX1410_ONT 2022))(info)GCA_021491975.1

•Caenorhabditis briggsae(nematode C.briggsae (AF16 v1 2008))(info)GCF_000004555.1

Caenorhabditis elegans

•Caenorhabditis elegans(nematode C.elegans (Bristol N2 2013))(info)GCA_000002985.3

•Caenorhabditis elegans(nematode C.elegans (CGC1 2025))(info)GCA_052911875.1

•Caenorhabditis elegans(roundworm)(info)GCF_000002985.6

•Caenorhabditis inopinata(nematode C.inopinata)(info)GCA_003052745.1

•Caenorhabditis japonica(nematode C.japonica (DF5081 2010))(info)GCA_000147155.1

•Caenorhabditis latens(nematode C.latens (PX534 2023))(info)GCA_002259235.3

•Caenorhabditis nigoni(nematode C.nigoni (JU1422 2017))(info)GCA_002742825.1

•Caenorhabditis panamensis(nematode C.panamensis (QG2080 2018))(info)GCA_900536275.1

Caenorhabditis remanei

•Caenorhabditis remanei(nematode C.remanei (PB4641 2007))(info)GCF_000149515.1

•Caenorhabditis remanei(nematode C.remanei (PX356 2023))(info)GCA_001643735.4

•Caenorhabditis remanei(nematode C.remanei (PX439 2023))(info)GCA_002259225.3

•Caenorhabditis remanei(nematode C.remanei (PX506 2020 genbank))(info)GCA_010183535.1

•Caenorhabditis remanei(nematode C.remanei (PX506 2020 refseq))(info)GCF_010183535.1

unclassified Caenorhabditis

•Caenorhabditis sp. 21 LS-2015(nematode C.sp. 21 LS-2015 (NIC534 2019))(info)GCA_900536235.3

•Caenorhabditis sp. 26 LS-2015(nematode C.sp. 26 LS-2015 (JU2190 2019))(info)GCA_900536285.3

•Caenorhabditis sp. 31 LS-2015(nematode C.sp. 31 LS-2015 (JU2585 2019))(info)GCA_900536295.3

•Caenorhabditis sp. 32 LS-2015(nematode C.sp. 32 LS-2015 (JU2788 2019))(info)GCA_900536325.3

•Caenorhabditis sp. 38 MB-2015(nematode C.sp. 38 MB-2015 (JU2809 2019))(info)GCA_900536415.3

•Caenorhabditis sp. 39 LS-2015(nematode C.sp. 39 LS-2015 (NIC564 2019))(info)GCA_900536345.3

•Caenorhabditis sp. 40 LS-2015(nematode C.sp. 40 LS-2015 (JU2818 2019))(info)GCA_900536305.3

•Caenorhabditis tropicalis(nematode C.tropicalis (JU1373 2011))(info)GCA_000186765.1

Mesorhabditinae

Mesorhabditis

•Mesorhabditis belari(nematode M.belari (JU2817 2023))(info)GCA_958450365.1

•Mesorhabditis spiculigera(nematode M.spiculigera (AF72 2023))(info)GCA_958295435.1

Rhabditinae

Oscheius

Oscheius tipulae

•Oscheius tipulae(nematode O.tipulae (2017))(info)GCA_900184235.1

•Oscheius tipulae(nematode O.tipulae (CEW1 2020))(info)GCA_013425905.1

•Allodiplogaster sudhausi(nematode A.sudhausi (2024))(info)GCA_945643635.2

Parapristionchus

•Parapristionchus giblindavisi(nematode P.giblindavisi (2022))(info)GCA_943737045.1

Neodiplogasteridae

Koerneria

•Koerneria luziae(nematode K.luziae (NKZ323 2020))(info)GCA_014805365.1

Pristionchus

•Pristionchus arcanus(nematode P.arcanus (2018))(info)GCA_900490705.1

•Pristionchus exspectatus(nematode P.exspectatus (2022))(info)GCA_911812115.1

•Pristionchus pacificus(nematode P.pacificus (PS312 2020))(info)GCA_000180635.4

•Steinernema scapterisci(mole cricket nematode (FL 2014))(info)GCA_000757745.1

•Steinernema carpocapsae(nematode S.carpocapsae (ALL 2019))(info)GCA_000757645.3

Steinernema feltiae

•Steinernema feltiae(nematode S.feltiae (NW 2019))(info)GCA_007213375.1

•Steinernema feltiae(nematode S.feltiae (SN 2014))(info)GCA_000757705.1

•Steinernema glaseri(nematode S.glaseri (NC 2014))(info)GCA_000757755.1

•Steinernema hermaphroditum(nematode S.hermaphroditum (PS9179 2023))(info)GCA_030435675.2

•Steinernema monticolum(nematode S.monticolum (2013))(info)GCA_000505645.1

Strongyloididae

Parastrongyloides

•Parastrongyloides trichosuri(nematode P.trichosuri (KNP 2014))(info)GCA_000941615.1

Strongyloides

•Strongyloides papillosus(nematode S.papillosus (LIN 2014))(info)GCA_000936265.1

•Strongyloides ratti(nematode S.ratti (ED321 Heterogonic 2014))(info)GCF_001040885.1

Strongyloides stercoralis

•Strongyloides stercoralis(nematode S.stercoralis (PV0001 2014))(info)GCA_000947215.1

•Strongyloides stercoralis(nematode S.stercoralis (PV001 2023))(info)GCA_029582065.1

•Strongyloides venezuelensis(nematode S.venezuelensis (2015))(info)GCA_001028725.1

Alloionematidae

Rhabditophanes

unclassified Rhabditophanes

•Rhabditophanes sp. KR3021(nematode Rhabditophanes sp. KR3021 (2014))(info)GCA_000944355.1

Panagrolaimoidea

Panagrolaimidae

Halicephalobus

•Halicephalobus mephisto(nematode H.mephisto (m2B 2019))(info)GCA_009193035.1

unclassified Halicephalobus

•Halicephalobus sp. NKZ332(nematode H.sp. (NKZ332 2019))(info)GCA_009761265.1

Panagrellus

•Panagrellus redivivus(nematode P.redivivus (MT8872 2013))(info)GCA_000341325.1

Panagrolaimus

unclassified Panagrolaimus

•Panagrolaimus sp. JU765(nematode Panagrolaimus (JU765 2019))(info)GCA_901765185.1

•Panagrolaimus sp. PS1159(nematode Panagrolaimus (PS1159 2019))(info)GCA_901765195.1

•Panagrolaimus sp. PS1579(nematode Panagrolaimus (PS1579 2019))(info)GCA_901779485.1

•Aphelenchoides besseyi(nematode A.besseyi (AORJ 2022))(info)GCA_024699835.1

Bursaphelenchus

•Bursaphelenchus okinawaensis(nematode B.okinawaensis (SH1 SH1 2021))(info)GCA_904066225.2

Bursaphelenchus xylophilus

•Bursaphelenchus xylophilus(pine wood nematode (Ka4C1 2021))(info)GCA_904066235.2

•Bursaphelenchus xylophilus(pine wood nematode (Ka4C1 inbred line 2011))(info)GCA_000231135.1

•Bursaphelenchus xylophilus(pine wood nematode (USG12 2020))(info)GCA_010367685.1

Sphaerularioidea

Allantonematidae

Bradynema

•Bradynema listronoti(nematode B.listronoti (AAFC-BrLi-01_J3_LR_R9 2022))(info)GCA_024678965.1

Anguinidae

Anguininae

Ditylenchus

Ditylenchus destructor

•Ditylenchus destructor(nematode D.destructor (Dd01 2016))(info)GCA_001579705.1

•Ditylenchus destructor(potato rot nematode D.destructor (BazhouSP 2022))(info)GCA_022814885.1

•Ditylenchus dipsaci(nematode D.dipsaci (pooled J2 2019))(info)GCA_004194705.1

•Globodera pallida(nematode G.pallida (D383 2021))(info)GCA_020449905.1

•Globodera pallida(nematode G.pallida (Lindley 2014))(info)GCA_000724045.1

•Globodera pallida(nematode G.pallida (Newton 2022))(info)GCA_023343765.1

Globodera rostochiensis

•Globodera rostochiensis(nematode G.rostochiensis (Ro1 2016))(info)GCA_900079975.1

•Globodera rostochiensis(nematode G.rostochiensis (Ro5 L22 2021))(info)GCA_018350315.1

Heterodera

Heterodera schachtii

•Heterodera schachtii(nematode H.schachtii (Bonn 2022))(info)GCA_023374025.1

•Heterodera schachtii(nematode H.schachtii (IRS 2021))(info)GCA_020449115.1

•Heterodera glycines(soybean cyst nematode (TN10 2021))(info)GCA_004148225.2

Meloidogynidae

Meloidogyninae

Meloidogyne

Meloidogyne incognita group

Meloidogyne arenaria

•Meloidogyne arenaria(nematode M.arenaria (A2-O Okinawa_01 2018))(info)GCA_003133805.1

•Meloidogyne arenaria(nematode M.arenaria (HarA 2018))(info)GCA_003693565.1

•Meloidogyne javanica(root-knot nematode (2017))(info)GCA_900003945.1

•Meloidogyne chitwoodi(nematode M.chitwoodi (Roza 2020))(info)GCA_015183025.1

•Meloidogyne floridensis(nematode M.floridensis (2014))(info)GCA_000751915.1

•Meloidogyne graminicola(nematode M.graminicola (IARI 2022))(info)GCA_002778205.2

•Meloidogyne hapla(northern root-knot nematode M.hapla (VW9 2008))(info)GCA_000172435.1

•Acrobeloides nanus(nematode A.nanus (2018))(info)GCA_900406225.1

unclassified Epsilonema

•Epsilonema sp. ZAB3_2(nematode E.sp. (ZAB3_2 2023))(info)GCA_030247985.1

•Plectus sambesii(nematode P.sambesii (ES601 2017))(info)GCA_002796945.1

•Trichuris trichiura(human whipworm (2014))(info)GCA_000613005.1

•Trichuris muris(nematode T.muris (Edinburgh 2019))(info)GCA_000612645.2

Trichuris suis

•Trichuris suis(pig whipworm (2014))(info)GCA_000797535.1

•Trichuris suis(pig whipworm (DCEP-RM93F 2014))(info)GCA_000701025.1

•Trichuris suis(pig whipworm (DCEP-RM93M 2014))(info)GCA_000701005.1

Trichinellidae

Trichinella

•Trichinella murrelli(nematode T.murrelli (ISS417 2015))(info)GCA_001447425.1

•Trichinella nativa(nematode T.nativa (ISS45 2017))(info)GCA_002148645.1

•Trichinella spiralis(nematode T.spiralis (ISS 195 2011))(info)GCF_000181795.1

•Romanomermis culicivorax(nematode R.culicivorax (2014))(info)GCA_001039655.1

•Soboliphyme baturini(nematode S.baturini (2018))(info)GCA_900618415.1

unclassified Gordionus

•Gordionus sp. m RMFG-2023(horsehair worms (2024))(info)GCF_954871325.1

•Priapulus caudatus(priapulids P.caudatus)(info)GCF_000485595.1

•Pinctada fucata(Akoya pearl oyster (2022))(info)GCA_028142955.1

•Pinctada imbricata(Akoya pearl oyster (pearl oyster-OUG 2017))(info)GCA_002216045.1

•Ylistrum balloti(Ballot's saucer scallop (Yb309-2 2023))(info)GCF_031769215.1

Argopecten

•Argopecten irradians(bay scallop (NY 2024))(info)GCF_041381155.1

Pecten

•Pecten maximus(great scallop (2019))(info)GCF_902652985.1

Mizuhopecten

•Mizuhopecten yessoensis(Yesso scallop)(info)GCF_002113885.1

•Mytilus coruscus(bivalve M.coruscus (M156 2021))(info)GCA_017311375.1

•Mytilus edulis(bivalve M.edulis (primary hap 2024))(info)GCF_963676685.1

Mytilus californianus

•Mytilus californianus(California mussel (M0D057914Y alternate hap 2022))(info)GCA_021869935.1

•Mytilus californianus(California mussel (M0D057914Y primary hap 2022))(info)GCF_021869535.1

•Mytilus trossulus(common blue mussel (FHL-02 hap1 2024))(info)GCF_036588685.1

Mytilus galloprovincialis

•Mytilus galloprovincialis(Mediterranean mussel (2020))(info)GCA_900618805.1

•Mytilus galloprovincialis(Mediterranean mussel (MGYT20220701 primary hap 2024))(info)GCA_037788925.1

•Mytilus galloprovincialis(Mediterranean mussel (xbMytGall1.hap1.1 2025 genbank))(info)GCA_965363235.1

•Mytilus galloprovincialis(Mediterranean mussel (xbMytGall1.hap1.1 2025 refseq))(info)GCF_965363235.1

•Saccostrea echinata(bivalve S.echinata (Australia AGI-Se365-2 2023))(info)GCF_033153115.1

•Saccostrea cuccullata(small rock oyster (Sc308-1 2023))(info)GCF_032062105.1

Ostrea

Ostrea edulis

•Ostrea edulis(bivalves O.edulis (OE_ROSLIN_2020 2022))(info)GCF_023158985.2

•Ostrea edulis(European flat oyster (primary hap 2022))(info)GCF_947568905.1

Crassostrea

•Crassostrea virginica(eastern oyster)(info)GCF_002022765.2

Magallana

Magallana gigas

•Magallana gigas(Pacific oyster (BGI 05x7-T-G4-1.051 20 2019))(info)GCA_000297895.2

•Magallana gigas(Pacific oyster (primary hap 2023))(info)GCF_963853765.1

•Magallana gigas(Pacific oyster (Roslin 2020))(info)GCF_902806645.1

•Magallana angulata(Portugese oyster (pt1a10 2022))(info)GCF_025612915.1

•Corbicula fluminea(Asian clam (DE_01 2016))(info)GCA_001632725.1

Veneroidea

Veneridae

Ruditapes

•Ruditapes philippinarum(Manila clam (M1 2022))(info)GCF_026571515.1

Mercenaria

Mercenaria mercenaria

•Mercenaria mercenaria(northern quahog (notata 2022))(info)GCF_021730395.1

•Mercenaria mercenaria(northern quahog (YKG-2019 2020))(info)GCF_014805675.1

•Mya arenaria(softshell (MELC-2E11 2022))(info)GCF_026914265.1

Dreissenoidea

Dreissenidae

Dreissena

•Dreissena polymorpha(zebra mussel (Duluth1 2021))(info)GCF_020536995.1

•Cepaea nemoralis(banded wood snail (xgCepNemo3.hap2.1 2024))(info)GCA_964166675.1

Arionoidea

Arionidae

Ariolimax

•Ariolimax columbianus(Pacific banana slug (1044Chap1 2024))(info)GCA_036924085.1

Biomphalaria glabrata

•Biomphalaria glabrata(bloodfluke planorb (primary hap 2022))(info)GCF_947242115.1

•Biomphalaria glabrata(bloodfluke planorb (v2 BB02 2013 refseq))(info)GCF_000457365.2

•Biomphalaria glabrata(bloodfluke planorb (v1 BB02 2013 refseq))(info)GCF_000457365.1

•Biomphalaria glabrata(bloodfluke planorb (v2 BB02 2013 genbank))(info)GCA_000457365.2

Physidae

Physella

Physella acuta

•Physella acuta(gastropods P.acuta (Inbredline_101_S28 2023))(info)GCF_028476545.1

•Physella acuta(gastropods P.acuta (Inbredline_101_S28 2023))(info)GCF_028476545.2

Lymnaeidae

Lymnaea

•Lymnaea stagnalis(great pond snail (2016))(info)GCA_900036025.1

•Aplysia californica(California sea hare)(info)GCF_000002075.1

•Conus betulinus(Betula cone snail C.betulinus (CN-2020 2021))(info)GCA_016801955.1

Buccinoidea

Buccinidae

Babylonia

•Babylonia areolata(gastropods B.areolata (BAREFJ2019XMU 2024))(info)GCF_041734735.1

•Littorina saxatilis(gastropods L.saxatilis (snail1 2024))(info)GCF_037325665.1

•Pomacea canaliculata(gastropods P.canaliculata)(info)GCF_003073045.1

•Haliotis cracherodii(black abalone (W230 alternate hap 2022))(info)GCA_022045225.1

•Haliotis cracherodii(black abalone (W230 primary hap 2022 genbank))(info)GCA_022045235.1

•Haliotis cracherodii(black abalone (W230 primary hap 2022 refseq))(info)GCF_022045235.1

•Haliotis rubra(blacklip abalone)(info)GCF_003918875.1

•Haliotis asinina(gastropods H.asinina (JCU_RB_2024 2024))(info)GCF_037392515.1

Haliotis rufescens

•Haliotis rufescens(red abalone (Redab-CP-2226-F 2018 Iowa State U))(info)GCF_003343065.1

•Haliotis rufescens(red abalone (VD_foot alternate hap 2022))(info)GCA_023055495.1

•Haliotis rufescens(red abalone (VD_foot primary hap 2022 UCLA))(info)GCF_023055435.1

•Patella vulgata(common limpet (v2 primary hap 2022))(info)GCF_932274485.2

•Patella vulgata(common limpet (v1 primary hap 2022))(info)GCF_932274485.1

•Lottia gigantea(owl limpet)(info)GCF_000327385.1

•Lottia gigantea(owl limpet (2012))(info)GCA_000327385.1

•Gigantopelta aegis(gastropods G.aegis)(info)GCF_016097555.1

•Octopus bimaculoides(California two-spot octopus (UCB-OBI-ISO-001 2022))(info)GCA_001194135.2

•Octopus bimaculoides(California two-spot octopus (v2 UCB-OBI-ISO-001 male 2022))(info)GCF_001194135.2

•Octopus bimaculoides(California two-spot octopus (v1 UCB-OBI-ISO-001 male 2015))(info)GCF_001194135.1

•Octopus sinensis(East Asian common octopus)(info)GCF_006345805.1

•Euprymna scolopes(Hawaiian bobtail squid E.scolopes (PROMET0715V01 2019))(info)GCA_004765925.1

•Nautilus pompilius(chambered nautilus (Nautilus ZY-0506 2021))(info)GCA_018389105.1

•Liolophura sinensis(chiton L.japonica (JHLJ2023 2024))(info)GCF_032854445.1

•Taenia asiatica(Asian tapeworm (2018))(info)GCA_900618005.1

•Taenia asiatica(Asian tapeworm (TASYD01 2016))(info)GCA_001693035.2

•Taenia saginata(beef tapeworm (TSAYD01 2016))(info)GCA_001693075.2

•Taenia multiceps(flatworm T.multiceps (Gns01 2018))(info)GCA_001923025.3

•Taenia solium(pork tapeworm (TsM 2016))(info)GCA_001870725.1

Echinococcus

Echinococcus canadensis group

•Echinococcus canadensis(flatworm E.canadensis (2016))(info)GCA_900004735.1

Echinococcus granulosus group

Echinococcus granulosus

•Echinococcus granulosus(flatworm E.granulosus (2013))(info)GCA_000469785.1

•Echinococcus granulosus(flatworm E.granulosus (2014))(info)GCF_000524195.1

•Echinococcus granulosus(flatworm E.granulosus (EgG1s_protoscolex 2022))(info)GCA_021556725.1

•Echinococcus multilocularis(flatworm E.multilocularis (2015))(info)GCA_000469725.3

•Echinococcus oligarthrus(flatworm E.oligarthrus (DaMi1 2019))(info)GCA_900683695.1

Hydatigera

•Hydatigera taeniaeformis(flatworm H.taeniaeformis (2018))(info)GCA_900622495.1

Hymenolepididae

Hymenolepis

•Hymenolepis microstoma(flatworm H.microstoma (2019))(info)GCA_000469805.3

Hymenolepis diminuta

•Hymenolepis diminuta(rat tapeworm (2018))(info)GCA_900618445.1

•Hymenolepis diminuta(rat tapeworm (WMS-il1 laboratory inbred isolate 2019))(info)GCA_902177915.1

Rodentolepis

•Rodentolepis nana(flatworm R.nana (2018))(info)GCA_900617975.1

Mesocestoididae

Mesocestoides

•Mesocestoides corti(flatworm M.corti (2018))(info)GCA_900604375.1

Diphyllobothriidea

Diphyllobothriidae

Dibothriocephalus

•Dibothriocephalus latus(broad fish tapeworm (2018))(info)GCA_900617775.1

Spirometra

•Spirometra erinaceieuropaei(flatworm S.erinaceieuropaei (2014))(info)GCA_000951995.1

Schistocephalus

•Schistocephalus solidus(flatworm S.solidus (NST_G2 2018))(info)GCA_900618435.1

•Opisthorchis felineus(cat liver fluke (AK-0245 2019))(info)GCA_004794785.1

•Opisthorchis viverrini(Southeast Asian liver fluke)(info)GCF_000715545.1

Clonorchis

•Clonorchis sinensis(oriental liver fluke (Cs-k2 2021))(info)GCA_003604175.2

•Atriophallophorus winterbourni(flatworm A.winterbourni (NZ2018 2020))(info)GCA_013407085.1

•Echinostoma caproni(flatworm E.caproni (Egypt 2018))(info)GCA_900618425.1

Fasciolidae

Fasciolopsis

•Fasciolopsis buskii(flatworm F.buski (HT 2019))(info)GCA_008360955.1

Fasciola

Fasciola gigantica

•Fasciola gigantica(flatworm F.gigantica (Basrah-Iraq 2023))(info)GCA_030506585.1

•Fasciola gigantica(flatworm F.gigantica (China_swamp 2021))(info)GCA_018104335.1

•Fasciola gigantica(flatworm F.gigantica (FG1 2023))(info)GCA_034768655.1

•Fasciola gigantica(flatworm F.gigantica (Uganda_cow_1 2019))(info)GCA_006461475.1

Fasciola hepatica

•Fasciola hepatica(liver fluke (2019))(info)GCA_002763495.2

•Fasciola hepatica(liver fluke (2024))(info)GCA_948099385.2

•Fasciola hepatica(liver fluke (Shrewsbury 2018))(info)GCA_900302435.1

Troglotremata

Troglotrematidae

Paragonimus

•Paragonimus heterotremus(flatworm P.heterotremus (LC 2020))(info)GCA_013368495.1

•Paragonimus kellicotti(flatworm P.kellicotti (Missouri 2020))(info)GCA_014220965.1

•Paragonimus skrjabini miyazakii(flatworm P.skrjabini miyazakii (Japan 2020))(info)GCA_014338405.1

Paragonimus westermani

•Paragonimus westermani(flatworm P.westermani (180907_Pwestermani 2020))(info)GCA_015252655.1

•Paragonimus westermani(flatworm P.westermani (IND2009 2019))(info)GCA_008508345.1

•Schistosoma bovis(flatworm S.bovis (TAN1997 2019))(info)GCA_003958945.1

•Schistosoma curassoni(flatworm S.curassoni (Dakar, Senegal 2018))(info)GCA_900618015.1

Schistosoma haematobium

•Schistosoma haematobium(flatworm S.haematobium (v3 2022))(info)GCF_000699445.3

•Schistosoma haematobium(flatworm S.haematobium (v2 2020))(info)GCF_000699445.2

Schistosoma japonicum

•Schistosoma japonicum(flatworm S.japonicum (Anhui 2009))(info)GCA_000151775.1

•Schistosoma japonicum(flatworm S.japonicum (F4M4 2022))(info)GCA_025215515.1

•Schistosoma japonicum(flatworm S.japonicum (HuSjv2 2019))(info)GCA_006368765.1

•Schistosoma japonicum(flatworm S.japonicum (SjaV3_Hu 2022))(info)GCA_021461655.1

Schistosoma mansoni

•Schistosoma mansoni(flatworm S.mansoni (Puerto Rico 2011 genbank))(info)GCA_000237925.2

•Schistosoma mansoni(flatworm S.mansoni (Puerto Rico 2011 refseq))(info)GCF_000237925.1

•Schistosoma margrebowiei(flatworm S.margrebowiei (2022))(info)GCA_944470205.2

•Gyrodactylus bullatarudis(flatworm G.bullatarudis (Rox2016 2020))(info)GCA_012064415.1

•Gyrodactylus salaris(gyrodactylosis fluke (Lier 2014))(info)GCA_000715275.1

•Protopolystoma xenopodis(flatworm P.xenopodis (2019))(info)GCA_900617795.1

•Macrostomum lignano(flatworm M.lignano (dv1 2015))(info)GCA_001188465.1

•Macrostomum lignano(flatworm M.lignano (DV1 2017))(info)GCA_002269645.1

Schmidtea mediterranea

•Schmidtea mediterranea(freshwater planarian (S2 2017))(info)GCA_002600895.1

•Schmidtea mediterranea(freshwater planarian (S2F2 2007))(info)GCA_000181075.1

•Lingula anatina(brachiopods L.anatina)(info)GCF_001039355.2

•Watersipora subatra(bryozoans W.subatra (primary hap 2023))(info)GCF_963576615.1

•Eisenia fetida(common brandling worm (Indian 2019))(info)GCA_003999395.1

•Helobdella robusta(segmented worms (2012))(info)GCA_000326865.1

•Helobdella robusta(segmented worms (v2 2012))(info)GCF_000326865.2

•Helobdella robusta(segmented worms (v1 2012))(info)GCF_000326865.1

•Owenia fusiformis(segmented worms (2022))(info)GCA_903813345.2

Spionida

Spionidae

Streblospio

•Streblospio benedicti(segmented worms (BayGN2011 2021))(info)GCA_019095985.1

Scolecida

Capitellidae

Capitella

•Capitella teleta(segmented worms (I ESC-2004 2013))(info)GCA_000328365.1

•Tubulanus polymorphus(ribbon worms (2024))(info)GCF_964204645.1

•Lineus longissimus(ribbon worms (primary hap 2022))(info)GCF_910592395.1

•Brachionus asplanchnoidis(monogonont rotifer B.asplanchnoidis (OHJ7i3n10 2022))(info)GCA_025491095.1

•Adineta vaga(rotifers (AD008 2022))(info)GCA_021613535.1

•Convolutriloba macropyga(red planarian C.macropyga (primary hap 2025))(info)GCF_964194025.1

Symsagittifera

•Symsagittifera roscoffensis(Roscoff worm S.roscoffensis (primary hap 2023))(info)GCF_963678635.1

Hofsteniidae

Hofstenia

•Hofstenia miamia(three-banded panther worm (2019))(info)GCA_900660155.1