JBrowse 2 genome browser hubs

196 accessions

Taxonomy:

root › cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Laurasiatheria › Artiodactyla

Taxonomy information:

View on NCBI (taxonomy ID: 91561)

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA))(info)GCF_002263795.3

•Bos taurus(cattle (Hereford 2015))(info)GCA_000003205.6

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA))(info)GCF_002263795.1

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA))(info)GCF_002263795.2

•Bos taurus(cattle (Hereford UMD_3.1.1 2014))(info)GCF_000003055.6

Bos indicus x Bos taurus

•Bos indicus x Bos taurus(Angus cow (Angus x Brahman F1 Angus haplotype 2018))(info)GCA_003369685.2

•Bos indicus x Bos taurus(Brahman cow (Angus x Brahman F1 Brahman haplotype 2018))(info)GCF_003369695.1

Bos indicus

•Bos indicus(zebu cattle (Nelore 2014 genbank))(info)GCA_000247795.2

•Bos indicus(zebu cattle (Hainan HN024 2024))(info)GCA_039881165.1

•Bos indicus(zebu cattle (Nelore 2014 refseq))(info)GCF_000247795.1

•Bos indicus(zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023))(info)GCF_029378745.1

•Bos javanicus(banteng 2023)(info)GCF_032452875.1

•Bos grunniens(domestic yak (maiwa yakHY00 2019))(info)GCA_005887515.3

Bos frontalis

•Bos frontalis(gayal (CVASU_BF_001 2021))(info)GCA_017311355.1

•Bos frontalis(gayal (Nagaland 2019))(info)GCA_007844835.1

Bos mutus

•Bos mutus(wild yak (GX-2022 2023))(info)GCF_027580195.1

•Bos mutus(wild yak (yakQH1 2013))(info)GCF_000298355.1

Bison

Bison bison

Bison bison bison

•Bison bison bison(American bison (2014 genbank))(info)GCA_000754665.1

•Bison bison bison(American bison (2014 refseq))(info)GCF_000754665.1

Bubalus

Bubalus bubalis

•Bubalus bubalis(water buffalo (Mediterranean 2013))(info)GCA_000471725.1

•Bubalus bubalis(water buffalo (Mediterranean 2018))(info)GCF_003121395.1

•Bubalus bubalis(water buffalo (Murrah 2021))(info)GCF_019923935.1

•Bubalus kerabau(carabao (swamp buffalo K-KA32 2023))(info)GCF_029407905.1

Caprinae

Ovis

Ovis aries

•Ovis aries(sheep (hu hu3095 2024))(info)GCA_040805955.1

•Ovis aries(Rambouillet sheep (Baylor 2017))(info)GCF_002742125.1

•Ovis aries(Rambouillet sheep (U.Idaho 2021))(info)GCF_016772045.1

•Ovis aries(sheep (OAR_USU_Benz2616 2023))(info)GCF_016772045.2

•Ovis aries(sheep (Texel 2015))(info)GCA_000298735.2

Ovis canadensis

•Ovis canadensis(bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.2

•Ovis canadensis(bighorn sheep (v1 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.1

•Ovis canadensis(bighorn sheep (BS48 2019))(info)GCA_004026945.1

•Ovis orientalis(Asiatic mouflon (Amuf_v1 2020))(info)GCA_014523465.1

Capra

Capra hircus

•Capra hircus(Inner Mongolia cashmere goat (2024))(info)GCA_041735815.1

•Capra hircus(goat (v1 San Clemente 2016 USDA genbank))(info)GCA_001704415.1

•Capra hircus(goat (v1 San Clemente 2016 USDA refseq))(info)GCF_001704415.1

•Capra hircus(goat (v2 San Clemente 2016 USDA))(info)GCF_001704415.2

•Capra hircus(Saanen dairy goat)(info)GCA_015443085.1

•Capra aegagrus(wild goat)(info)GCA_000978405.1

Ammotragus

•Ammotragus lervia(aoudad)(info)GCA_002201775.1

Nilgiritragus

•Nilgiritragus hylocrius(Nilgiri tahr)(info)GCA_004026825.1

Capricornis

•Capricornis sumatraensis(Sumatran serow (serow.1 2024))(info)GCF_032405125.1

Budorcas

•Budorcas taxicolor(takin (Tak-1 2022))(info)GCF_023091745.1

Antilopinae

Pantholops

•Pantholops hodgsonii(chiru)(info)GCA_000400835.1

Saiga

•Saiga tatarica(saiga antelope)(info)GCA_004024985.1

Alcelaphinae

Beatragus

•Beatragus hunteri(hirola (BS46 2019 Broad))(info)GCA_004027495.1

Hippotraginae

Oryx

•Oryx dammah(scimitar-horned oryx)(info)GCF_014754425.2

•Dama dama(fallow deer (maternal hap SK-2024 2025))(info)GCA_048126745.1

•Dama dama(fallow deer (paternal hap SK-2024 2025))(info)GCA_048127045.1

•Dama dama(fallow deer (Ldn47 2023))(info)GCF_033118175.1

Cervus

Cervus elaphus

•Cervus elaphus(red deer (alternate hap 2021))(info)GCA_910593805.1

•Cervus elaphus(red deer (2021))(info)GCF_910594005.1

•Cervus canadensis(elk (wapiti))(info)GCF_019320065.1

•Cervus nippon(sika deer (Changchun, China MLH-2022 2023))(info)GCA_034195675.1

Elaphurus

•Elaphurus davidianus(Pere David's deer)(info)GCA_002443075.1

Muntiacinae

Muntiacus

Muntiacus reevesi

•Muntiacus reevesi(Reeves' muntjac (alternate hap 2024))(info)GCA_963930665.1

•Muntiacus reevesi(Reeves' muntjac (primary hap 2024))(info)GCF_963930625.1

Odocoileinae

Odocoileus

Odocoileus virginianus

•Odocoileus virginianus(white-tailed deer (Illinois 20LAN1187 2024))(info)GCF_023699985.2

Odocoileus virginianus texanus

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 genbank))(info)GCA_002102435.1

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 refseq))(info)GCF_002102435.1

Rangifer

Rangifer tarandus

•Rangifer tarandus(reindeer (2023))(info)GCA_963422255.1

•Rangifer tarandus(reindeer (US061 2019))(info)GCA_004026565.1

•Rangifer tarandus caribou(boreal woodland reindeer (boreal CA-31 2023))(info)GCA_019903745.2

Alces

Alces alces

•Alces alces(moose/elk (2024))(info)GCA_964270355.1

•Alces alces(moose/elk (AALL_1980 2023))(info)GCA_015832495.2

•Alces alces(moose/elk (MIG12-28694850 2019))(info)GCA_007570765.1

Capreolus

•Capreolus capreolus(western roe deer (2023))(info)GCA_951849835.1

Antilocapridae

Antilocapra

Antilocapra americana

•Antilocapra americana(pronghorn (BS35 2019 Broad))(info)GCA_004027515.1

•Antilocapra americana(pronghorn (PH2016 2021))(info)GCA_021018645.1

Moschidae

Moschus

•Moschus berezovskii(Chinese forest musk deer (Sichuan 2022))(info)GCF_022376915.1

•Moschus moschiferus(Siberian musk deer (BS20 2019 Broad))(info)GCA_004024705.1

Giraffidae

Giraffa

•Giraffa tippelskirchi(Masai giraffe (MA1 2016 Penn St))(info)GCA_001651235.1

Okapia

•Okapia johnstoni(okapi)(info)GCA_001660835.1

Tragulina

Tragulidae

Tragulus

•Tragulus javanicus(Java mouse-deer (US108 2019 Broad))(info)GCA_004024965.1

•Monodon monoceros(narwhal (Baffin Bay Population NGI 2022))(info)GCA_005190385.3

•Monodon monoceros(narwhal (BS41 2019 Broad))(info)GCA_004026685.1

•Monodon monoceros(narwhal (Baffin Bay 2019))(info)GCF_005190385.1

Delphinapterus

Delphinapterus leucas

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v2 2017))(info)GCA_002288925.2

•Delphinapterus leucas(beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020))(info)GCA_009917745.1

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v3 2019))(info)GCF_002288925.2

Phocoenidae

Phocoena

Phocoena sinus

•Phocoena sinus(vaquita (alternate hap mPhoSin1 2019))(info)GCA_008692045.1

•Phocoena sinus(vaquita (mPhoSin1 2019))(info)GCF_008692025.1

Phocoena phocoena

•Phocoena phocoena(harbor porpoise (primary hap 2024 genbank))(info)GCA_963924675.1

•Phocoena phocoena(harbor porpoise (primary hap 2024 refseq))(info)GCF_963924675.1

•Phocoena phocoena(harbor porpoise (BS71 2019))(info)GCA_004363495.1

Neophocaena

Neophocaena asiaeorientalis

Neophocaena asiaeorientalis asiaeorientalis

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 2018 refseq))(info)GCF_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 wild 2018 genbank))(info)GCA_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v2 wild 2018 refseq))(info)GCF_003031525.2

Delphinidae

Tursiops

Tursiops truncatus

•Tursiops truncatus(common bottlenose dolphin (paternal 2020))(info)GCA_011762515.1

•Tursiops truncatus(common bottlenose dolphin (maternal 2020))(info)GCA_011762535.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y genbank 2020))(info)GCA_011762595.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y refseq 2020))(info)GCF_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 genbank))(info)GCA_001922835.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 refseq))(info)GCF_001922835.1

•Tursiops truncatus(common bottlenose dolphin (mTurTru1 2024))(info)GCF_011762595.2

Pseudorca

Pseudorca crassidens

•Pseudorca crassidens(false killer whale (hap1 2024 genbank))(info)GCA_039906515.1

•Pseudorca crassidens(false killer whale (hap2 2024))(info)GCA_039906525.1

•Pseudorca crassidens(false killer whale (hap1 2024 refseq))(info)GCF_039906515.1

Orcinus

Orcinus orca

•Orcinus orca(killer whale (alternate hap 2022))(info)GCA_937001455.1

•Orcinus orca(killer whale (2022))(info)GCF_937001465.1

•Orcinus orca(killer whale (Morgan 2013))(info)GCF_000331955.2

Lagenorhynchus

Lagenorhynchus albirostris

•Lagenorhynchus albirostris(white-beaked dolphin (alternate hap 2023))(info)GCA_949774935.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 genbank))(info)GCA_949774975.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 refseq))(info)GCF_949774975.1

Delphinus

Delphinus delphis

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 genbank))(info)GCA_949987515.1

•Delphinus delphis(saddleback dolphin (alternate hap 2023))(info)GCA_949987525.1

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 refseq))(info)GCF_949987515.1

•Delphinus delphis(saddleback dolphin (v2 primary hap 2024 refseq))(info)GCF_949987515.2

Stenella

Stenella coeruleoalba

•Stenella coeruleoalba(striped dolphin (primary hap 2023))(info)GCA_951394435.1

•Stenella coeruleoalba(striped dolphin (alternate hap 2023))(info)GCA_951394445.1

Globicephala

Globicephala melas

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 genbank))(info)GCA_963455315.2

•Globicephala melas(long-finned pilot whale (v1 primary hap 2023))(info)GCF_963455315.1

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 refseq))(info)GCF_963455315.2

•Globicephala melas(long-finned pilot whale (X-22926-18 2019))(info)GCF_006547405.1

Leucopleurus

Leucopleurus acutus

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024))(info)GCA_964270905.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024))(info)GCA_964270935.1

Grampus

Grampus griseus

•Grampus griseus(Risso's dolphin (hap1.1 2024))(info)GCA_964374135.1

•Grampus griseus(Risso's dolphin (hap2.1 2024))(info)GCA_964374185.1

Sagmatias

•Sagmatias obliquidens(Pacific white-sided dolphin)(info)GCF_003676395.1

Ziphiidae

Mesoplodon

Mesoplodon densirostris

•Mesoplodon densirostris(Blainville's beaked whale (alternate hap 2022))(info)GCA_025094165.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 genbank))(info)GCA_025265405.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 refseq))(info)GCF_025265405.1

Mesoplodon bidens

•Mesoplodon bidens(Sowerby's beaked whale (hap2 2024))(info)GCA_964148845.1

•Mesoplodon bidens(Sowerby's beaked whale (hap1 2024))(info)GCA_964165515.1

•Mesoplodon bidens(Sowerby's beaked whale (US080 2019))(info)GCA_004027085.1

Mesoplodon mirus

•Mesoplodon mirus(True's beaked whale (hap1.1 2024))(info)GCA_964341445.1

•Mesoplodon mirus(True's beaked whale (hap2.1 2024))(info)GCA_964341485.1

Hyperoodon

Hyperoodon ampullatus

•Hyperoodon ampullatus(northern bottlenose whale (primary hap 2023))(info)GCA_949752795.1

•Hyperoodon ampullatus(northern bottlenose whale (alternate hap 2023))(info)GCA_949752845.1

Ziphius

•Ziphius cavirostris(Cuvier's beaked whale)(info)GCA_004364475.1

Physeteridae

Kogia

Kogia breviceps

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank))(info)GCA_026419965.1

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 2 2022))(info)GCA_026419985.1

•Kogia breviceps(pygmy sperm whale (haplotype 1 2022 refseq))(info)GCF_026419965.1

•Kogia breviceps(pygmy sperm whale)(info)GCA_004363705.1

Physeter

Physeter macrocephalus

•Physeter macrocephalus(sperm whale (SW-GA 2019))(info)GCF_002837175.2

•Physeter macrocephalus(sperm whale (SW-GA 2023))(info)GCF_002837175.3

Iniidae

Inia

Inia geoffrensis

•Inia geoffrensis(boutu (hap1 2024))(info)GCA_036417435.1

•Inia geoffrensis(boutu (hap2 2024))(info)GCA_036417475.1

•Inia geoffrensis(boutu (BS63 2019))(info)GCA_004363515.1

Lipotidae

Lipotes

Lipotes vexillifer

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 genbank))(info)GCA_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 refseq))(info)GCF_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1.1 BGI 2013 refseq))(info)GCF_000442215.2

Platanistidae

Platanista

•Platanista minor(Indus River dolphin)(info)GCA_004363435.1

Mysticeti

Balaenopteridae

Balaenoptera

Balaenoptera musculus

•Balaenoptera musculus(blue whale (alternate hap JJ_BM4_2016_0621 2019))(info)GCA_008658375.1

•Balaenoptera musculus(Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020))(info)GCA_008658375.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v2 2020))(info)GCA_009873245.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v3 primary hap 2020))(info)GCF_009873245.2

Balaenoptera ricei

•Balaenoptera ricei(Rice's whale (hap1 2023))(info)GCA_028017805.1

•Balaenoptera ricei(Rice's whale (hap2 2023 genbank))(info)GCA_028023285.1

•Balaenoptera ricei(Rice's whale (hap2 2023 refseq))(info)GCF_028023285.1

Balaenoptera acutorostrata

•Balaenoptera acutorostrata(minke whale (alternate hap 2023))(info)GCA_950005055.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 refseq))(info)GCF_949987535.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 genbank))(info)GCA_949987535.1

Balaenoptera acutorostrata scammoni

•Balaenoptera acutorostrata scammoni(minke whale (2013 genbank))(info)GCA_000493695.1

•Balaenoptera acutorostrata scammoni(minke whale (2013 refseq))(info)GCF_000493695.1

Balaenoptera borealis

•Balaenoptera borealis(sei whale (hap2.1 2025))(info)GCA_965194725.1

•Balaenoptera borealis(sei whale (hap1.1 2025))(info)GCA_965194805.1

Balaenoptera physalus

•Balaenoptera physalus(fin whale (hap2.1 2025))(info)GCA_965194765.1

•Balaenoptera physalus(fin whale (hap1.1 2025))(info)GCA_965194825.1

•Balaenoptera bonaerensis(Antarctic minke whale)(info)GCA_000978805.1

Megaptera

•Megaptera novaeangliae(humpback whale (KW2013002 2024))(info)GCA_041834305.1

Eschrichtiidae

Eschrichtius

Eschrichtius robustus

•Eschrichtius robustus(grey whale (primary hap 2023 genbank))(info)GCA_028021215.1

•Eschrichtius robustus(grey whale (mEscRob2 alternate hap 2023))(info)GCA_028021475.1

•Eschrichtius robustus(grey whale (primary hap 2023 refseq))(info)GCF_028021215.1

•Eschrichtius robustus(grey whale)(info)GCA_004363415.1

Balaenidae

Eubalaena

Eubalaena glacialis

•Eubalaena glacialis(North Atlantic right whale (hap2 2023 genbank))(info)GCA_028564815.1

•Eubalaena glacialis(North Atlantic right whale (hap1 2023))(info)GCA_028571275.1

•Eubalaena glacialis(North Atlantic right whale (hap2 + XY 2023 refseq))(info)GCF_028564815.1

•Eubalaena japonica(North Pacific right whale)(info)GCA_004363455.1

Ancodonta

Hippopotamidae

Hippopotamus

Hippopotamus amphibius

•Hippopotamus amphibius(hippopotamus (BS01 2019 Broad))(info)GCA_004027065.1

•Hippopotamus amphibius(hippopotamus (HIP001 2018))(info)GCA_002995585.1

Hippopotamus amphibius kiboko

•Hippopotamus amphibius kiboko(hippopotamus (mHipAmp2 hap1 2023))(info)GCA_030028035.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 refseq))(info)GCF_030028045.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 genbank))(info)GCA_030028045.1

•Sus scrofa(pig (Bamei 2023))(info)GCA_030704935.1

•Sus scrofa(pig (Wuzhishan WZS1 2025))(info)GCA_048338725.1

•Sus scrofa(pig (Norwegian landrace 2024))(info)GCA_963921485.1

•Sus scrofa(pig (Duroc 2017))(info)GCF_000003025.6

•Sus scrofa(pig (USMARCv1 2017))(info)GCA_002844635.1

Phacochoerus

•Phacochoerus africanus(common warthog (WHEZ1 2021))(info)GCF_016906955.1

Tayassuidae

Catagonus

Catagonus wagneri

•Catagonus wagneri(Chacoan peccary (BS18 v1 2019 Broad))(info)GCA_004024745.1

•Catagonus wagneri(Chacoan peccary (BS20 v2 2019 Broad))(info)GCA_004024745.2

•Camelus dromedarius(Arabian camel (paternal hap 2024 genbank))(info)GCA_036321535.1

•Camelus dromedarius(Arabian camel (hap2 2024))(info)GCA_036321565.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 refseq))(info)GCF_036321535.1

•Camelus dromedarius(Arabian camel (2014 genbank))(info)GCA_000767585.1

•Camelus dromedarius(Arabian camel (Drom800 2019 refseq))(info)GCF_000803125.2

Camelus bactrianus

•Camelus bactrianus(Bactrian camel (Alxa 2014 genbank))(info)GCA_000767855.1

•Camelus bactrianus(Bactrian camel (Alxa 2014 refseq))(info)GCF_000767855.1

•Camelus bactrianus(Bactrian camel YW-2024 2025)(info)GCF_048773025.1

Camelus ferus

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 genbank))(info)GCA_000311805.2

•Camelus ferus(wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020))(info)GCF_009834535.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 refseq))(info)GCF_000311805.1

Vicugna

Vicugna pacos

•Vicugna pacos(alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.3

•Vicugna pacos(alpaca (2025))(info)GCF_048564905.1

•Vicugna pacos(alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.4

•Vicugna pacos huacaya(alpaca (2015 BGI))(info)GCA_000767525.1