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541 accessions

Taxonomy:

root › cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Laurasiatheria

Taxonomy information:

View on NCBI (taxonomy ID: 314145)

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA))(info)GCF_002263795.3

•Bos taurus(cattle (Hereford 2015))(info)GCA_000003205.6

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA))(info)GCF_002263795.1

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA))(info)GCF_002263795.2

•Bos taurus(cattle (Hereford UMD_3.1.1 2014))(info)GCF_000003055.6

Bos indicus x Bos taurus

•Bos indicus x Bos taurus(Angus cow (Angus x Brahman F1 Angus haplotype 2018))(info)GCA_003369685.2

•Bos indicus x Bos taurus(Brahman cow (Angus x Brahman F1 Brahman haplotype 2018))(info)GCF_003369695.1

Bos indicus

•Bos indicus(zebu cattle (Nelore 2014 genbank))(info)GCA_000247795.2

•Bos indicus(zebu cattle (Hainan HN024 2024))(info)GCA_039881165.1

•Bos indicus(zebu cattle (Nelore 2014 refseq))(info)GCF_000247795.1

•Bos indicus(zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023))(info)GCF_029378745.1

•Bos javanicus(banteng 2023)(info)GCF_032452875.1

•Bos grunniens(domestic yak (maiwa yakHY00 2019))(info)GCA_005887515.3

Bos frontalis

•Bos frontalis(gayal (CVASU_BF_001 2021))(info)GCA_017311355.1

•Bos frontalis(gayal (Nagaland 2019))(info)GCA_007844835.1

Bos mutus

•Bos mutus(wild yak (GX-2022 2023))(info)GCF_027580195.1

•Bos mutus(wild yak (yakQH1 2013))(info)GCF_000298355.1

Bison

Bison bison

Bison bison bison

•Bison bison bison(American bison (2014 genbank))(info)GCA_000754665.1

•Bison bison bison(American bison (2014 refseq))(info)GCF_000754665.1

Bubalus

Bubalus bubalis

•Bubalus bubalis(water buffalo (Mediterranean 2013))(info)GCA_000471725.1

•Bubalus bubalis(water buffalo (Mediterranean 2018))(info)GCF_003121395.1

•Bubalus bubalis(water buffalo (Murrah 2021))(info)GCF_019923935.1

•Bubalus kerabau(carabao (swamp buffalo K-KA32 2023))(info)GCF_029407905.1

Caprinae

Ovis

Ovis aries

•Ovis aries(sheep (hu hu3095 2024))(info)GCA_040805955.1

•Ovis aries(Rambouillet sheep (Baylor 2017))(info)GCF_002742125.1

•Ovis aries(Rambouillet sheep (U.Idaho 2021))(info)GCF_016772045.1

•Ovis aries(sheep (OAR_USU_Benz2616 2023))(info)GCF_016772045.2

•Ovis aries(sheep (Texel 2015))(info)GCA_000298735.2

Ovis canadensis

•Ovis canadensis(bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.2

•Ovis canadensis(bighorn sheep (v1 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.1

•Ovis canadensis(bighorn sheep (BS48 2019))(info)GCA_004026945.1

•Ovis orientalis(Asiatic mouflon (Amuf_v1 2020))(info)GCA_014523465.1

Capra

Capra hircus

•Capra hircus(Inner Mongolia cashmere goat (2024))(info)GCA_041735815.1

•Capra hircus(goat (v1 San Clemente 2016 USDA genbank))(info)GCA_001704415.1

•Capra hircus(goat (v1 San Clemente 2016 USDA refseq))(info)GCF_001704415.1

•Capra hircus(goat (v2 San Clemente 2016 USDA))(info)GCF_001704415.2

•Capra hircus(Saanen dairy goat)(info)GCA_015443085.1

•Capra aegagrus(wild goat)(info)GCA_000978405.1

Ammotragus

•Ammotragus lervia(aoudad)(info)GCA_002201775.1

Nilgiritragus

•Nilgiritragus hylocrius(Nilgiri tahr)(info)GCA_004026825.1

Capricornis

•Capricornis sumatraensis(Sumatran serow (serow.1 2024))(info)GCF_032405125.1

Budorcas

•Budorcas taxicolor(takin (Tak-1 2022))(info)GCF_023091745.1

Antilopinae

Pantholops

•Pantholops hodgsonii(chiru)(info)GCA_000400835.1

Saiga

•Saiga tatarica(saiga antelope)(info)GCA_004024985.1

Alcelaphinae

Beatragus

•Beatragus hunteri(hirola (BS46 2019 Broad))(info)GCA_004027495.1

Hippotraginae

Oryx

•Oryx dammah(scimitar-horned oryx)(info)GCF_014754425.2

•Dama dama(fallow deer (maternal hap SK-2024 2025))(info)GCA_048126745.1

•Dama dama(fallow deer (paternal hap SK-2024 2025))(info)GCA_048127045.1

•Dama dama(fallow deer (Ldn47 2023))(info)GCF_033118175.1

Cervus

Cervus elaphus

•Cervus elaphus(red deer (alternate hap 2021))(info)GCA_910593805.1

•Cervus elaphus(red deer (2021))(info)GCF_910594005.1

•Cervus canadensis(elk (wapiti))(info)GCF_019320065.1

•Cervus nippon(sika deer (Changchun, China MLH-2022 2023))(info)GCA_034195675.1

Elaphurus

•Elaphurus davidianus(Pere David's deer)(info)GCA_002443075.1

Muntiacinae

Muntiacus

Muntiacus reevesi

•Muntiacus reevesi(Reeves' muntjac (alternate hap 2024))(info)GCA_963930665.1

•Muntiacus reevesi(Reeves' muntjac (primary hap 2024))(info)GCF_963930625.1

Odocoileinae

Odocoileus

Odocoileus virginianus

•Odocoileus virginianus(white-tailed deer (Illinois 20LAN1187 2024))(info)GCF_023699985.2

Odocoileus virginianus texanus

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 genbank))(info)GCA_002102435.1

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 refseq))(info)GCF_002102435.1

Rangifer

Rangifer tarandus

•Rangifer tarandus(reindeer (2023))(info)GCA_963422255.1

•Rangifer tarandus(reindeer (US061 2019))(info)GCA_004026565.1

•Rangifer tarandus caribou(boreal woodland reindeer (boreal CA-31 2023))(info)GCA_019903745.2

Alces

Alces alces

•Alces alces(moose/elk (2024))(info)GCA_964270355.1

•Alces alces(moose/elk (AALL_1980 2023))(info)GCA_015832495.2

•Alces alces(moose/elk (MIG12-28694850 2019))(info)GCA_007570765.1

Capreolus

•Capreolus capreolus(western roe deer (2023))(info)GCA_951849835.1

Antilocapridae

Antilocapra

Antilocapra americana

•Antilocapra americana(pronghorn (BS35 2019 Broad))(info)GCA_004027515.1

•Antilocapra americana(pronghorn (PH2016 2021))(info)GCA_021018645.1

Moschidae

Moschus

•Moschus berezovskii(Chinese forest musk deer (Sichuan 2022))(info)GCF_022376915.1

•Moschus moschiferus(Siberian musk deer (BS20 2019 Broad))(info)GCA_004024705.1

Giraffidae

Giraffa

•Giraffa tippelskirchi(Masai giraffe (MA1 2016 Penn St))(info)GCA_001651235.1

Okapia

•Okapia johnstoni(okapi)(info)GCA_001660835.1

Tragulina

Tragulidae

Tragulus

•Tragulus javanicus(Java mouse-deer (US108 2019 Broad))(info)GCA_004024965.1

•Monodon monoceros(narwhal (Baffin Bay Population NGI 2022))(info)GCA_005190385.3

•Monodon monoceros(narwhal (BS41 2019 Broad))(info)GCA_004026685.1

•Monodon monoceros(narwhal (Baffin Bay 2019))(info)GCF_005190385.1

Delphinapterus

Delphinapterus leucas

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v2 2017))(info)GCA_002288925.2

•Delphinapterus leucas(beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020))(info)GCA_009917745.1

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v3 2019))(info)GCF_002288925.2

Phocoenidae

Phocoena

Phocoena sinus

•Phocoena sinus(vaquita (alternate hap mPhoSin1 2019))(info)GCA_008692045.1

•Phocoena sinus(vaquita (mPhoSin1 2019))(info)GCF_008692025.1

Phocoena phocoena

•Phocoena phocoena(harbor porpoise (primary hap 2024 genbank))(info)GCA_963924675.1

•Phocoena phocoena(harbor porpoise (primary hap 2024 refseq))(info)GCF_963924675.1

•Phocoena phocoena(harbor porpoise (BS71 2019))(info)GCA_004363495.1

Neophocaena

Neophocaena asiaeorientalis

Neophocaena asiaeorientalis asiaeorientalis

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 2018 refseq))(info)GCF_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 wild 2018 genbank))(info)GCA_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v2 wild 2018 refseq))(info)GCF_003031525.2

Delphinidae

Tursiops

Tursiops truncatus

•Tursiops truncatus(common bottlenose dolphin (paternal 2020))(info)GCA_011762515.1

•Tursiops truncatus(common bottlenose dolphin (maternal 2020))(info)GCA_011762535.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y genbank 2020))(info)GCA_011762595.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y refseq 2020))(info)GCF_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 genbank))(info)GCA_001922835.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 refseq))(info)GCF_001922835.1

•Tursiops truncatus(common bottlenose dolphin (mTurTru1 2024))(info)GCF_011762595.2

Pseudorca

Pseudorca crassidens

•Pseudorca crassidens(false killer whale (hap1 2024 genbank))(info)GCA_039906515.1

•Pseudorca crassidens(false killer whale (hap2 2024))(info)GCA_039906525.1

•Pseudorca crassidens(false killer whale (hap1 2024 refseq))(info)GCF_039906515.1

Orcinus

Orcinus orca

•Orcinus orca(killer whale (alternate hap 2022))(info)GCA_937001455.1

•Orcinus orca(killer whale (2022))(info)GCF_937001465.1

•Orcinus orca(killer whale (Morgan 2013))(info)GCF_000331955.2

Lagenorhynchus

Lagenorhynchus albirostris

•Lagenorhynchus albirostris(white-beaked dolphin (alternate hap 2023))(info)GCA_949774935.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 genbank))(info)GCA_949774975.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 refseq))(info)GCF_949774975.1

Delphinus

Delphinus delphis

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 genbank))(info)GCA_949987515.1

•Delphinus delphis(saddleback dolphin (alternate hap 2023))(info)GCA_949987525.1

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 refseq))(info)GCF_949987515.1

•Delphinus delphis(saddleback dolphin (v2 primary hap 2024 refseq))(info)GCF_949987515.2

Stenella

Stenella coeruleoalba

•Stenella coeruleoalba(striped dolphin (primary hap 2023))(info)GCA_951394435.1

•Stenella coeruleoalba(striped dolphin (alternate hap 2023))(info)GCA_951394445.1

Globicephala

Globicephala melas

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 genbank))(info)GCA_963455315.2

•Globicephala melas(long-finned pilot whale (v1 primary hap 2023))(info)GCF_963455315.1

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 refseq))(info)GCF_963455315.2

•Globicephala melas(long-finned pilot whale (X-22926-18 2019))(info)GCF_006547405.1

Leucopleurus

Leucopleurus acutus

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024))(info)GCA_964270905.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024))(info)GCA_964270935.1

Grampus

Grampus griseus

•Grampus griseus(Risso's dolphin (hap1.1 2024))(info)GCA_964374135.1

•Grampus griseus(Risso's dolphin (hap2.1 2024))(info)GCA_964374185.1

Sagmatias

•Sagmatias obliquidens(Pacific white-sided dolphin)(info)GCF_003676395.1

Ziphiidae

Mesoplodon

Mesoplodon densirostris

•Mesoplodon densirostris(Blainville's beaked whale (alternate hap 2022))(info)GCA_025094165.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 genbank))(info)GCA_025265405.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 refseq))(info)GCF_025265405.1

Mesoplodon bidens

•Mesoplodon bidens(Sowerby's beaked whale (hap2 2024))(info)GCA_964148845.1

•Mesoplodon bidens(Sowerby's beaked whale (hap1 2024))(info)GCA_964165515.1

•Mesoplodon bidens(Sowerby's beaked whale (US080 2019))(info)GCA_004027085.1

Mesoplodon mirus

•Mesoplodon mirus(True's beaked whale (hap1.1 2024))(info)GCA_964341445.1

•Mesoplodon mirus(True's beaked whale (hap2.1 2024))(info)GCA_964341485.1

Hyperoodon

Hyperoodon ampullatus

•Hyperoodon ampullatus(northern bottlenose whale (primary hap 2023))(info)GCA_949752795.1

•Hyperoodon ampullatus(northern bottlenose whale (alternate hap 2023))(info)GCA_949752845.1

Ziphius

•Ziphius cavirostris(Cuvier's beaked whale)(info)GCA_004364475.1

Physeteridae

Kogia

Kogia breviceps

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank))(info)GCA_026419965.1

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 2 2022))(info)GCA_026419985.1

•Kogia breviceps(pygmy sperm whale (haplotype 1 2022 refseq))(info)GCF_026419965.1

•Kogia breviceps(pygmy sperm whale)(info)GCA_004363705.1

Physeter

Physeter macrocephalus

•Physeter macrocephalus(sperm whale (SW-GA 2019))(info)GCF_002837175.2

•Physeter macrocephalus(sperm whale (SW-GA 2023))(info)GCF_002837175.3

Iniidae

Inia

Inia geoffrensis

•Inia geoffrensis(boutu (hap1 2024))(info)GCA_036417435.1

•Inia geoffrensis(boutu (hap2 2024))(info)GCA_036417475.1

•Inia geoffrensis(boutu (BS63 2019))(info)GCA_004363515.1

Lipotidae

Lipotes

Lipotes vexillifer

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 genbank))(info)GCA_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 refseq))(info)GCF_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1.1 BGI 2013 refseq))(info)GCF_000442215.2

Platanistidae

Platanista

•Platanista minor(Indus River dolphin)(info)GCA_004363435.1

Mysticeti

Balaenopteridae

Balaenoptera

Balaenoptera musculus

•Balaenoptera musculus(blue whale (alternate hap JJ_BM4_2016_0621 2019))(info)GCA_008658375.1

•Balaenoptera musculus(Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020))(info)GCA_008658375.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v2 2020))(info)GCA_009873245.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v3 primary hap 2020))(info)GCF_009873245.2

Balaenoptera ricei

•Balaenoptera ricei(Rice's whale (hap1 2023))(info)GCA_028017805.1

•Balaenoptera ricei(Rice's whale (hap2 2023 genbank))(info)GCA_028023285.1

•Balaenoptera ricei(Rice's whale (hap2 2023 refseq))(info)GCF_028023285.1

Balaenoptera acutorostrata

•Balaenoptera acutorostrata(minke whale (alternate hap 2023))(info)GCA_950005055.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 refseq))(info)GCF_949987535.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 genbank))(info)GCA_949987535.1

Balaenoptera acutorostrata scammoni

•Balaenoptera acutorostrata scammoni(minke whale (2013 genbank))(info)GCA_000493695.1

•Balaenoptera acutorostrata scammoni(minke whale (2013 refseq))(info)GCF_000493695.1

Balaenoptera borealis

•Balaenoptera borealis(sei whale (hap2.1 2025))(info)GCA_965194725.1

•Balaenoptera borealis(sei whale (hap1.1 2025))(info)GCA_965194805.1

Balaenoptera physalus

•Balaenoptera physalus(fin whale (hap2.1 2025))(info)GCA_965194765.1

•Balaenoptera physalus(fin whale (hap1.1 2025))(info)GCA_965194825.1

•Balaenoptera bonaerensis(Antarctic minke whale)(info)GCA_000978805.1

Megaptera

•Megaptera novaeangliae(humpback whale (KW2013002 2024))(info)GCA_041834305.1

Eschrichtiidae

Eschrichtius

Eschrichtius robustus

•Eschrichtius robustus(grey whale (primary hap 2023 genbank))(info)GCA_028021215.1

•Eschrichtius robustus(grey whale (mEscRob2 alternate hap 2023))(info)GCA_028021475.1

•Eschrichtius robustus(grey whale (primary hap 2023 refseq))(info)GCF_028021215.1

•Eschrichtius robustus(grey whale)(info)GCA_004363415.1

Balaenidae

Eubalaena

Eubalaena glacialis

•Eubalaena glacialis(North Atlantic right whale (hap2 2023 genbank))(info)GCA_028564815.1

•Eubalaena glacialis(North Atlantic right whale (hap1 2023))(info)GCA_028571275.1

•Eubalaena glacialis(North Atlantic right whale (hap2 + XY 2023 refseq))(info)GCF_028564815.1

•Eubalaena japonica(North Pacific right whale)(info)GCA_004363455.1

Ancodonta

Hippopotamidae

Hippopotamus

Hippopotamus amphibius

•Hippopotamus amphibius(hippopotamus (BS01 2019 Broad))(info)GCA_004027065.1

•Hippopotamus amphibius(hippopotamus (HIP001 2018))(info)GCA_002995585.1

Hippopotamus amphibius kiboko

•Hippopotamus amphibius kiboko(hippopotamus (mHipAmp2 hap1 2023))(info)GCA_030028035.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 refseq))(info)GCF_030028045.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 genbank))(info)GCA_030028045.1

•Sus scrofa(pig (Bamei 2023))(info)GCA_030704935.1

•Sus scrofa(pig (Wuzhishan WZS1 2025))(info)GCA_048338725.1

•Sus scrofa(pig (Norwegian landrace 2024))(info)GCA_963921485.1

•Sus scrofa(pig (Duroc 2017))(info)GCF_000003025.6

•Sus scrofa(pig (USMARCv1 2017))(info)GCA_002844635.1

Phacochoerus

•Phacochoerus africanus(common warthog (WHEZ1 2021))(info)GCF_016906955.1

Tayassuidae

Catagonus

Catagonus wagneri

•Catagonus wagneri(Chacoan peccary (BS18 v1 2019 Broad))(info)GCA_004024745.1

•Catagonus wagneri(Chacoan peccary (BS20 v2 2019 Broad))(info)GCA_004024745.2

•Camelus dromedarius(Arabian camel (paternal hap 2024 genbank))(info)GCA_036321535.1

•Camelus dromedarius(Arabian camel (hap2 2024))(info)GCA_036321565.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 refseq))(info)GCF_036321535.1

•Camelus dromedarius(Arabian camel (2014 genbank))(info)GCA_000767585.1

•Camelus dromedarius(Arabian camel (Drom800 2019 refseq))(info)GCF_000803125.2

Camelus bactrianus

•Camelus bactrianus(Bactrian camel (Alxa 2014 genbank))(info)GCA_000767855.1

•Camelus bactrianus(Bactrian camel (Alxa 2014 refseq))(info)GCF_000767855.1

•Camelus bactrianus(Bactrian camel YW-2024 2025)(info)GCF_048773025.1

Camelus ferus

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 genbank))(info)GCA_000311805.2

•Camelus ferus(wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020))(info)GCF_009834535.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 refseq))(info)GCF_000311805.1

Vicugna

Vicugna pacos

•Vicugna pacos(alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.3

•Vicugna pacos(alpaca (2025))(info)GCF_048564905.1

•Vicugna pacos(alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.4

•Vicugna pacos huacaya(alpaca (2015 BGI))(info)GCA_000767525.1

•Canis lupus(gray wolf (alternate hap 2021))(info)GCA_905319845.1

•Canis lupus(gray wolf (2021))(info)GCA_905319855.2

Canis lupus familiaris

•Canis lupus familiaris(dog (labrador SID07034 2020))(info)GCF_014441545.1

•Canis lupus familiaris(dog (German shepard Mischka 2020))(info)GCF_011100685.1

•Canis lupus familiaris(dog (BS72 2019 Broad))(info)GCA_004027395.1

•Canis lupus familiaris(dog (Basenji MU ID 185726 2019))(info)GCA_004886185.2

•Canis lupus familiaris(dog (Basenji UNSW-BAS-2019 2021))(info)GCA_013276365.2

•Canis lupus familiaris(dog (Bernese Mountain Dog BD 2023))(info)GCA_031010765.1

•Canis lupus familiaris(dog (Bernese Mountain Dog OD 2023))(info)GCA_031010635.1

•Canis lupus familiaris(dog (boxer Tasha 2011))(info)GCF_000002285.3

•Canis lupus familiaris(dog (boxer Tasha 2020))(info)GCF_000002285.5

•Canis lupus familiaris(dog (Cairn Terrier CA611 2023))(info)GCA_031010295.1

•Canis lupus familiaris(dog (German Shepherd Nala 2020))(info)GCA_008641055.3

•Canis lupus familiaris(dog (Labrador retriever 2023))(info)GCA_031165255.1

Canis lupus baileyi

•Canis lupus baileyi(Mexican gray wolf (hap2 2025))(info)GCA_048164845.1

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 refseq))(info)GCF_048164855.1

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 genbank))(info)GCA_048164855.1

Canis lupus dingo

•Canis lupus dingo(dingo (2020 Alpine COOINDA U.NSW))(info)GCF_012295265.1

•Canis lupus dingo(dingo (Sandy 2020 James Cook U))(info)GCF_003254725.2

•Canis latrans(coyote (coyote_06102 2023))(info)GCA_034620425.1

Lycaon

Lycaon pictus

•Lycaon pictus(African hunting dog (LycPic1hap1 2024))(info)GCA_040955645.1

•Lycaon pictus(African hunting dog (LycPic1hap2 2024))(info)GCA_040955705.1

•Lycaon pictus(African hunting dog)(info)GCA_001887905.1

Vulpes

Vulpes vulpes

•Vulpes vulpes(red fox (hap1 2024))(info)GCA_964106825.2

•Vulpes vulpes(red fox (hap2 2024))(info)GCA_964106925.2

•Vulpes vulpes(red fox (BD-2025 2025))(info)GCF_048418805.1

•Vulpes vulpes(red fox (tameXaggressive cross 2018))(info)GCF_003160815.1

Vulpes lagopus

•Vulpes lagopus(Arctic fox (US066 2019 Broad))(info)GCA_004023825.1

•Vulpes lagopus(Arctic fox (Blue_001 2021 refseq))(info)GCF_018345385.1

•Vulpes corsac(Corsac fox (zsh2022 2023))(info)GCA_030463245.1

•Vulpes ferrilata(Tibetan sand fox (lyu1992 2022))(info)GCA_024500485.1

Urocyon

•Urocyon cinereoargenteus(gray fox (Vermont ataVT051 2023))(info)GCA_032313775.1

Nyctereutes

•Nyctereutes procyonoides(raccoon dog (2021))(info)GCF_905146905.1

Ursidae

Ursus

Ursus americanus

•Ursus americanus(American black bear (L20-20 alternate hap 2022))(info)GCA_024610745.1

•Ursus americanus(American black bear (L20-20 primary hap 2022))(info)GCA_024610735.1

•Ursus americanus(American black bear (UA15103 2021))(info)GCF_020975775.1

Ursus arctos

•Ursus arctos(brown bear (v1.0 2022 WashU))(info)GCF_023065955.1

•Ursus arctos(brown bear (v2.0 North America Adak 2023))(info)GCF_023065955.2

Ursus arctos horribilis

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v1 2018))(info)GCF_003584765.1

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v2 2018))(info)GCF_003584765.2

Ursus maritimus

•Ursus maritimus(polar bear (Baiyulong BGI 2014 genbank))(info)GCA_000687225.1

•Ursus maritimus(polar bear (Baiyulong BGI 2014 refseq))(info)GCF_000687225.1

•Ursus maritimus(polar bear (UCSC 2021))(info)GCF_017311325.1

Ailuropoda

Ailuropoda melanoleuca

•Ailuropoda melanoleuca(giant panda (2009 BGI))(info)GCF_000004335.2

•Ailuropoda melanoleuca(giant panda (Jingjing v1 2017))(info)GCA_002007445.1

•Ailuropoda melanoleuca(giant panda (Jingjing v2 genbank 2020))(info)GCA_002007445.2

•Ailuropoda melanoleuca(giant panda (Jingjing v2 refseq 2020))(info)GCF_002007445.1

•Ailuropoda melanoleuca(giant panda (Jingjing v3 2020))(info)GCF_002007445.2

Mirounga angustirostris

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap2 2023))(info)GCA_029215635.1

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap1 2023 genbank))(info)GCA_029215605.1

•Mirounga angustirostris(northern elephant seal (v2 JK_09032017 2021))(info)GCF_021288785.1

•Mirounga angustirostris(northern elephant seal (BS05 2019 Broad))(info)GCA_004023865.1

•Mirounga angustirostris(Northern elephant seal (CCGP_5_RB_7025 hap1 2023 refseq))(info)GCF_029215605.1

•Mirounga angustirostris(northern elephant seal (v3 JK_09032017 2022))(info)GCF_021288785.2

•Mirounga leonina(southern elephant seal)(info)GCF_011800145.1

Monachini

Neomonachus

Neomonachus schauinslandi

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U genbank))(info)GCA_002201575.1

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U refseq))(info)GCF_002201575.1

•Neomonachus schauinslandi(Hawaiian monk seal (2021 Johns Hopkins U))(info)GCF_002201575.2

Lobodontini

Leptonychotes

Leptonychotes weddellii

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 genbank))(info)GCA_000349705.1

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 refseq))(info)GCF_000349705.1

Phocinae

Halichoerus

Halichoerus grypus

•Halichoerus grypus(gray seal (hap1.1 2025))(info)GCA_964656455.1

•Halichoerus grypus(gray seal (hap2.1 2025))(info)GCA_964656465.1

•Halichoerus grypus(gray seal (241Hg 2020))(info)GCF_012393455.1

Phoca

•Phoca vitulina(harbor seal)(info)GCF_004348235.1

Otariidae

Zalophus

Zalophus californianus

•Zalophus californianus(California sea lion (alternate hap 2019))(info)GCA_009762295.1

•Zalophus californianus(California sea lion (mZalCal1 alternate hap 2020))(info)GCA_009762295.2

•Zalophus californianus(California sea lion (v1 2019))(info)GCA_009762305.1

•Zalophus californianus(California sea lion (v2 primary hap 2020))(info)GCF_009762305.2

•Zalophus californianus(California sea lion (BS06 2019 Broad))(info)GCA_004024565.1

•Zalophus californianus(California sea lion (LMU 2018 refseq))(info)GCF_900631625.1

Callorhinus

Callorhinus ursinus

•Callorhinus ursinus(northern fur seal)(info)GCF_003265705.1

•Callorhinus ursinus(northern fur seal (GAN/ISIS: 27379988/994484 2025))(info)GCF_003265705.2

Eumetopias

•Eumetopias jubatus(Steller sea lion)(info)GCF_004028035.1

Odobenidae

Odobenus

Odobenus rosmarus

•Odobenus rosmarus divergens(Pacific walrus)(info)GCF_000321225.1

•Mustela erminea(ermine (alternate hap 2020))(info)GCA_009829165.1

•Mustela erminea(ermine (2020))(info)GCF_009829155.1

Mustela lutreola

•Mustela lutreola(European mink (alternate hap 2023))(info)GCA_030435785.1

•Mustela lutreola(European mink (primary hap 2023 refseq))(info)GCF_030435805.1

•Mustela lutreola(European mink (primary hap 2023 genbank))(info)GCA_030435805.1

Mustela nivalis

•Mustela nivalis(least weasel (hap2.1 2025))(info)GCA_964662095.1

•Mustela nivalis(least weasel (hap1.1 2025))(info)GCA_964662115.1

Mustela putorius

Mustela putorius furo

•Mustela putorius furo(domestic ferret (Sable ID 1420 FGSC 2011))(info)GCF_000215625.1

•Mustela putorius furo(domestic ferret (JIRA1106 JCVI 2020))(info)GCF_011764305.1

•Mustela putorius furo(domestic ferret (Sable 2011 Broad))(info)GCA_000239315.1

•Mustela nigripes(black-footed ferret (SB6536 2022))(info)GCF_022355385.1

Neogale

Neogale vison

•Neogale vison(American mink (hap2 2024))(info)GCA_964106205.1

•Neogale vison(American mink (hap1 2024))(info)GCA_964106545.1

•Neogale vison(American mink (2018))(info)GCA_900108605.1

•Neogale vison(American mink (M4711 2021 Dalhousie U))(info)GCF_020171115.1

Lutrinae

Lutra

Lutra lutra

•Lutra lutra(Eurasian river otter (alternate hap 2019))(info)GCA_902653095.1

•Lutra lutra(Eurasian river otter (2020))(info)GCF_902655055.1

Enhydra

Enhydra lutris

Enhydra lutris kenyoni

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 genbank))(info)GCA_002288905.2

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 refseq))(info)GCF_002288905.1

Pteronura

•Pteronura brasiliensis(giant otter)(info)GCA_004024605.1

Lontra

•Lontra canadensis(northern American river otter)(info)GCF_010015895.1

Melinae

Meles

Meles meles

•Meles meles(Eurasian badger (v3.2 2022))(info)GCA_922984935.2

•Meles meles(Eurasian badger (2021))(info)GCA_922990625.1

•Meles meles(Eurasian badger (v3.1 2021))(info)GCF_922984935.1

Guloninae

Martes

•Martes martes(European pine marten (primary hap 2023))(info)GCA_963455335.1

Gulo

Gulo gulo

•Gulo gulo luscus(American wolverine (FN33715 2022))(info)GCA_024509225.1

Mellivoriane

Mellivora

•Mellivora capensis(ratel)(info)GCA_004024625.1

Ailuridae

Ailurus

•Ailurus styani(lesser panda (RP43 2017))(info)GCA_002007465.1

Mephitidae

Spilogale

•Spilogale gracilis(western spotted skunk)(info)GCA_004023965.1

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022))(info)GCA_022079275.1

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022))(info)GCF_022079265.1

Lynx canadensis

•Lynx canadensis(Canada lynx (alternate hap LIC74 2019))(info)GCA_007474575.1

•Lynx canadensis(Canada lynx (LIC74 v2 alternate hap 2020))(info)GCA_007474575.2

•Lynx canadensis(Canada lynx (LIC74 v1 2019))(info)GCF_007474595.1

•Lynx canadensis(Canada lynx (LIC74 v2 primary hap 2020))(info)GCF_007474595.2

Puma

Puma concolor

•Puma concolor(puma (L17-30 alternate hap 2023))(info)GCA_028749965.1

•Puma concolor(puma (L17-30 primary hap 2023))(info)GCA_028749985.1

•Puma concolor(puma (SC36_Marlon 2018 genbank))(info)GCA_003327715.1

•Puma concolor(puma (SC36_Marlon 2018 refseq))(info)GCF_003327715.1

Acinonyx

Acinonyx jubatus

•Acinonyx jubatus(cheetah (AJU 981 2015))(info)GCA_001443585.1

•Acinonyx jubatus(cheetah (Ajub_Pintada_27869175 2022))(info)GCF_027475565.1

•Acinonyx jubatus(cheetah (Rico 2018))(info)GCF_003709585.1

Felis

•Felis nigripes(black-footed cat)(info)GCA_004023925.1

Felis catus

•Felis catus(domestic cat (Abyssinian Cinnamon 2017 WashU))(info)GCF_000181335.3

•Felis catus(domestic cat (Abyssinian Cinnamon 2021 WashU))(info)GCA_000181335.5

•Felis catus(domestic cat (Abyssinian Cinnamon 2021))(info)GCA_000181335.6

•Felis catus(domestic cat (Fca126 2021 Texas A&M U))(info)GCF_018350175.1

Prionailurus

•Prionailurus viverrinus(fishing cat (Anna 2022 U Missouri))(info)GCF_022837055.1

•Prionailurus bengalensis(leopard cat)(info)GCF_016509475.1

Leopardus

•Leopardus geoffroyi(Geoffroy's cat)(info)GCF_018350155.1

Herpailurus

•Herpailurus yagouaroundi(jaguarundi)(info)GCF_014898765.1

Pantherinae

Neofelis

Neofelis nebulosa

•Neofelis nebulosa(clouded leopard (mNeoNeb1 alternate hap 2023))(info)GCA_028018655.1

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 refseq))(info)GCF_028018385.1

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 genbank))(info)GCA_028018385.1

Panthera

Panthera onca

•Panthera onca(jaguar (hap2 2025))(info)GCA_046562875.1

•Panthera onca(jaguar (hap1 2025))(info)GCA_046562885.1

•Panthera onca(jaguar (BS21 2019))(info)GCA_004023805.1

•Panthera onca(jaguar (Sample0147 2023))(info)GCF_028533385.1

Panthera tigris

•Panthera tigris(tiger)(info)GCF_018350195.1

Panthera tigris altaica

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 genbank))(info)GCA_000464555.1

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 refseq))(info)GCF_000464555.1

Panthera pardus

•Panthera pardus(leopard (Maewha 2016 genbank))(info)GCA_001857705.1

•Panthera pardus(leopard (Hobbes primary hap 2022))(info)GCF_024362965.1

•Panthera pardus(leopard (Maewha 2016 refseq))(info)GCF_001857705.1

•Panthera leo(lion)(info)GCF_018350215.1

•Panthera uncia(snow leopard (11264 2022))(info)GCF_023721935.1

Herpestidae

Suricata

Suricata suricatta

•Suricata suricatta(meercat (VVHF042 2019 DNA Zoo genbank))(info)GCA_006229205.1

•Suricata suricatta(meerkat (BS45 2019 Broad))(info)GCA_004023905.1

•Suricata suricatta(meerkat (VVHF042 2019 DNA Zoo refseq))(info)GCF_006229205.1

Mungos

•Mungos mungo(banded mongoose)(info)GCA_004023785.1

Helogale

•Helogale parvula(dwarf mongoose)(info)GCA_004023845.1

Viverridae

Paradoxurinae

Paradoxurus

•Paradoxurus hermaphroditus(Asian palm civet)(info)GCA_004024585.1

Eupleridae

Euplerinae

Cryptoprocta

•Cryptoprocta ferox(fossa)(info)GCA_004023885.1

Hyaenidae

Hyaena

Hyaena hyaena

•Hyaena hyaena(striped hyena (BS54 2019 Broad))(info)GCA_004023945.1

•Hyaena hyaena(striped hyena (Hyena2069 2018 Potsdam U))(info)GCF_003009895.1

•Myotis myotis(greater mouse-eared bat (2020 Bat1K))(info)GCF_014108235.1

•Myotis myotis(greater mouse-eared bat (2019 Broad))(info)GCA_004026985.1

Myotis yumanensis

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023))(info)GCA_028536395.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 genbank))(info)GCA_028538775.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 refseq))(info)GCF_028538775.1

Myotis daubentonii

•Myotis daubentonii(Daubenton's bat (alternate hap 2023))(info)GCA_963242275.1

•Myotis daubentonii(Daubenton's bat (primary hap 2023 refseq))(info)GCF_963259705.1

•Myotis daubentonii(Daubenton's bat (primary hap 2023 genbank))(info)GCA_963259705.1

Myotis mystacinus

•Myotis mystacinus(whiskered bat (hap1 2024))(info)GCA_964094495.2

•Myotis mystacinus(whiskered bat (hap2 2024))(info)GCA_964195625.1

Myotis nattereri

•Myotis nattereri(Natterer's bat (hap2.1 2024))(info)GCA_964212025.1

•Myotis nattereri(Natterer's bat (hap2.2 2025))(info)GCA_964212025.2

•Myotis nattereri(Natterer's bat (hap1.1 2024))(info)GCA_964212035.1

•Myotis nattereri(Natterer's bat (hap1.2 2025))(info)GCA_964212035.2

Myotis emarginatus

•Myotis emarginatus(Geoffroy's bat (hap1.1 2025))(info)GCA_965115925.1

•Myotis emarginatus(Geoffroy's bat (hap2.1 2025))(info)GCA_965115945.1

•Myotis brandtii(Brandt's bat)(info)GCF_000412655.1

•Myotis davidii(David's myotis bat)(info)GCF_000327345.1

•Myotis lucifugus(little brown bat)(info)GCF_000147115.1

•Myotis pilosus(Rickett's big-footed myotis (AB-2021 2024))(info)GCA_036010255.1

Corynorhinus

Corynorhinus townsendii

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230055.1

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230045.1

Antrozous

•Antrozous pallidus(pallid bat (TK200870 primary hap 2023))(info)GCA_027563665.1

Pipistrellus

Pipistrellus pipistrellus

•Pipistrellus pipistrellus(common pipistrelle (alternate hap 2020))(info)GCA_903992515.1

•Pipistrellus pipistrellus(common pipistrelle (2020))(info)GCA_903992545.1

•Pipistrellus pipistrellus(common pipistrelle (hap1.1 2025))(info)GCA_965203405.1

•Pipistrellus pipistrellus(common pipistrelle (hap2.1 2025))(info)GCA_965204225.1

•Pipistrellus pipistrellus(common pipistrelle (Broad 2019))(info)GCA_004026625.1

Pipistrellus pygmaeus

•Pipistrellus pygmaeus(soprano pipistrelle (primary hap 2023))(info)GCA_949987585.1

•Pipistrellus pygmaeus(soprano pipistrelle (alternate hap 2023))(info)GCA_949987765.1

Pipistrellus nathusii

•Pipistrellus nathusii(Nathusius's pipistrelle (primary hap 2024))(info)GCA_963693515.1

•Pipistrellus nathusii(Nathusius's pipistrelle (hap2.1 2025))(info)GCA_964656075.1

•Pipistrellus nathusii(Nathusius's pipistrelle (hap1.1 2025))(info)GCA_964656225.1

•Pipistrellus hanaki(Hanaki's dwarf bat (2024))(info)GCA_964339955.1

•Pipistrellus kuhlii(Kuhl's pipistrelle (2020))(info)GCF_014108245.1

Cnephaeus

Cnephaeus nilssonii

•Cnephaeus nilssonii(northern bat (primary hap 2023))(info)GCA_951640355.1

•Cnephaeus nilssonii(northern bat (alternate hap 2023))(info)GCA_951640545.1

Plecotus

•Plecotus auritus(brown big-eared bat (primary hap 2023))(info)GCA_963455305.1

Vespertilio

•Vespertilio murinus(particolored bat (primary hap 2024))(info)GCA_963924515.1

Nyctalus

Nyctalus leisleri

•Nyctalus leisleri(lesser noctule (v1 hap1 2024))(info)GCA_964264875.1

•Nyctalus leisleri(lesser noctule (v2 hap1 2025))(info)GCA_964264875.2

•Nyctalus leisleri(lesser noctule (v1 hap2 2024))(info)GCA_964264895.1

•Nyctalus leisleri(lesser noctule (v2 hap2 2025))(info)GCA_964264895.2

Eptesicus

Eptesicus fuscus

•Eptesicus fuscus(big brown bat (TK198812 2023))(info)GCF_027574615.1

•Eptesicus fuscus(big brown bat (BU_THK_EF1 2012))(info)GCF_000308155.1

Murina

•Murina feae(little tube-nosed bat)(info)GCA_004026665.1

Lasiurus

•Lasiurus borealis(red bat)(info)GCA_004026805.1

Phyllostomidae

Phyllostominae

Phyllostomus

Phyllostomus discolor

•Phyllostomus discolor(pale spear-nosed bat (alternate hap MPI-MPIP 2019))(info)GCA_004115245.1

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020))(info)GCA_004115245.2

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v1 2019))(info)GCF_004126475.1

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020))(info)GCF_004126475.2

•Phyllostomus hastatus(greater spear-nosed bat (2021 Texas Tech U))(info)GCF_019186645.2

Micronycteris

•Micronycteris hirsuta(hairy big-eared bat (US037 2019 Broad))(info)GCA_004026765.1

Tonatia

•Tonatia bakeri(stripe-headed round-eared bat)(info)GCA_004024845.1

Desmodontinae

Desmodus

Desmodus rotundus

•Desmodus rotundus(common vampire bat (v1 HL8 alternate hap 2022 genbank))(info)GCA_022682395.1

•Desmodus rotundus(common vampire bat (v2 HL8 alternate hap 2022 genbank))(info)GCA_022682395.2

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 genbank))(info)GCA_022682495.1

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 genbank))(info)GCA_022682495.2

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 refseq))(info)GCF_022682495.1

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 genbank))(info)GCA_002940915.2

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 refseq))(info)GCF_002940915.1

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 refseq))(info)GCF_022682495.2

•Desmodus rotundus(common vampire bat (v3 DRU21DN04 2018))(info)GCF_002940915.2

Stenodermatinae

Artibeus

Artibeus lituratus

•Artibeus lituratus(great fruit-eating bat (v1 hap1 2024))(info)GCA_038363095.1

•Artibeus lituratus(great fruit-eating bat (v2 hap1 2024))(info)GCA_038363095.2

•Artibeus lituratus(great fruit-eating bat (mArtLit1hap2 2024))(info)GCA_038363175.2

Artibeus intermedius

•Artibeus intermedius(great fruit-eating bat (hap1 2024))(info)GCA_038363145.1

•Artibeus intermedius(bat A.intermedius (hap2 2024))(info)GCA_038363225.1

Artibeus jamaicensis

•Artibeus jamaicensis(Jamaican fruit-eating bat (US092 2019 Broad))(info)GCA_004027435.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (1a 2020 Wuhan U))(info)GCF_014825515.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (2021))(info)GCF_021234435.1

Sturnira

Sturnira hondurensis

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020))(info)GCF_014824575.1

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.1 Veracruz 20B 2020))(info)GCF_014824575.3

•Sturnira hondurensis(neotropical fruit bat)(info)GCF_014824575.2

Glossophaginae

Glossophaga

Glossophaga mutica

•Glossophaga mutica(Merriam's long-tongued bat (hap1 2024))(info)GCA_039655065.1

•Glossophaga mutica(Merriam's long-tongued bat (hap2 2024))(info)GCA_039656995.1

Anoura

•Anoura caudifer(tailed tailless bat)(info)GCA_004027475.1

Carolliinae

Carollia

•Carollia perspicillata(Seba's short-tailed bat)(info)GCA_004027735.1

Molossidae

Molossus

Molossus nigricans

•Molossus nigricans(northern black mastiff bat (mMolNig1 2022))(info)GCA_026936385.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap2 2024))(info)GCA_039880925.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap1 2024))(info)GCA_039880945.1

Molossus alvarezi

•Molossus alvarezi(Alvarez's mastiff bat (A012 2023))(info)GCA_031001765.1

•Molossus alvarezi(Alvarez's mastiff bat (hap1 2024))(info)GCA_037157525.1

•Molossus alvarezi(Alvarez's mastiff bat (hap2 2024))(info)GCA_037176705.1

•Molossus molossus(Pallas's mastiff bat)(info)GCF_014108415.1

Tadarida

Tadarida brasiliensis

•Tadarida brasiliensis(Brazilian free-tailed bat (primary hap 2023))(info)GCA_030848825.1

•Tadarida brasiliensis(Brazilian free-tailed bat (US034 2019))(info)GCA_004025005.1

Mops

•Mops condylurus(Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024))(info)GCA_043748645.1

Emballonuridae

Emballonurinae

Saccopteryx

Saccopteryx bilineata

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 genbank))(info)GCA_036850765.1

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 refseq))(info)GCF_036850765.1

Saccopteryx leptura

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 genbank))(info)GCA_036850995.1

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 refseq))(info)GCF_036850995.1

Rhynchonycteris

Rhynchonycteris naso

•Rhynchonycteris naso(proboscis bat (hap1 2024))(info)GCA_037038545.1

•Rhynchonycteris naso(proboscis bat (hap2 2024))(info)GCA_037038555.1

Miniopteridae

Miniopterus

Miniopterus schreibersii

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap2 2024))(info)GCA_964145185.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap2 2025))(info)GCA_964145185.2

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap1 2024))(info)GCA_964146895.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap1 2025))(info)GCA_964146895.2

•Miniopterus schreibersii(Schreibers' long-fingered bat (US075 2019))(info)GCA_004026525.1

•Miniopterus natalensis(Natal long-fingered bat)(info)GCF_001595765.1

Mormoopidae

Mormoops

•Mormoops blainvillei(Antillean ghost-faced bat)(info)GCA_004026545.1

Pteronotus

•Pteronotus parnellii(Parnell's mustached bat (2013))(info)GCA_000465405.1

•Pteronotus mesoamericanus(Parnell's mustached bat (Mesoamerican 2021))(info)GCF_021234165.1

Noctilionidae

Noctilio

•Noctilio leporinus(greater bulldog bat)(info)GCA_004026585.1

Rhinolophus ferrumequinum

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 genbank))(info)GCA_004115265.2

•Rhinolophus ferrumequinum(greater horseshoe bat (MPI-CBG alternate hap 2019))(info)GCA_004115295.1

•Rhinolophus ferrumequinum(greater horseshoe bat (mRhiFer1 2020))(info)GCA_014108255.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 refseq))(info)GCF_004115265.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v2 MPI-CBG 2019))(info)GCF_004115265.2

•Rhinolophus affinis(intermediate horseshoe bat (China 20211001_DDa primary hap 2024))(info)GCA_043728065.1

•Rhinolophus trifoliatus(trefoil horseshoe bat (Malaysia primary hap 2024))(info)GCA_043728145.1

Rhinolophus perniger

•Rhinolophus perniger lanosus(northern woolly horseshoe bat (20210929_DDc primary hap 2024))(info)GCA_043748575.1

•Rhinolophus yonghoiseni(Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024))(info)GCA_043880425.1

Rhinolophus hipposideros

•Rhinolophus hipposideros(lesser horseshoe bat (hap1 2024))(info)GCA_964194185.1

•Rhinolophus hipposideros(lesser horseshoe bat (hap2 2024))(info)GCA_964194215.1

Rhinolophus sinicus

•Rhinolophus sinicus(Chinese rufous horseshoe bat)(info)GCA_001888835.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCA_036562045.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCF_036562045.2

Hipposideridae

Hipposideros

Hipposideros larvatus sensu lato

Hipposideros larvatus

•Hipposideros larvatus(intermediate roundleaf bat (primary hap 2023))(info)GCA_031876335.1

•Hipposideros larvatus(bat H.larvatus (China 20210929_DDb primary hap 2024))(info)GCA_043727955.1

Hipposideros armiger

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 genbank))(info)GCA_001890085.1

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 refseq))(info)GCF_001890085.1

•Hipposideros armiger(great roundleaf bat (v2 ML-2016 2016))(info)GCF_001890085.2

•Hipposideros galeritus(Cantor's roundleaf bat)(info)GCA_004027415.1

Aselliscus

•Aselliscus stoliczkanus(Stoliczka's trident bat (China 2021113_DDA primary hap 2024))(info)GCA_043727835.1

Doryrhina

•Doryrhina cyclops(cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024))(info)GCA_043880285.1

Rhinopomatidae

Rhinopoma

•Rhinopoma microphyllum(greater mouse-tailed bat (20210906_DDa primary hap 2024))(info)GCA_043880545.1

Megadermatidae

Megaderma

•Megaderma spasma(lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024))(info)GCA_043880595.1

Lyroderma

•Lyroderma lyra(Indian false vampire)(info)GCA_004026885.1

Craseonycteridae

Craseonycteris

•Craseonycteris thonglongyai(hog-nosed bat)(info)GCA_004027555.1

Rousettus aegyptiacus

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 refseq))(info)GCF_014176215.1

•Rousettus aegyptiacus(Egyptian rousette (US006 2019 Broad))(info)GCA_004024865.1

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 genbank))(info)GCA_014176215.1

•Rousettus aegyptiacus(Egyptian rousette (1219 2016 Boston U))(info)GCF_001466805.2

•Rousettus leschenaultii(Leschenault's rousette (2020))(info)GCA_015472975.1

Pteropodinae

Pteropus

•Pteropus alecto(black flying fox)(info)GCF_000325575.1

Pteropus vampyrus

•Pteropus vampyrus(Indian flying fox)(info)GCF_902729225.1

•Pteropus vampyrus(large flying fox)(info)GCF_000151845.1

Eidolon

•Eidolon helvum(straw-colored fruit bat)(info)GCA_000465285.1

Cynopterinae

Cynopterus

•Cynopterus sphinx(Indian short-nosed fruit bat (CYSPWHU 2023))(info)GCA_030015415.1

Macroglossinae

Macroglossus

•Macroglossus sobrinus(long-tongued fruit bat (US102 2019 Broad))(info)GCA_004027375.1

•Diceros bicornis(black rhinoceros (BS38 2019 Broad))(info)GCA_004027315.1

Diceros bicornis minor

•Diceros bicornis minor(black rhinoceros (alternate hap 2021))(info)GCA_020826835.1

•Diceros bicornis minor(black rhinoceros (primary hap 2021 genbank))(info)GCA_020826845.1

•Diceros bicornis minor(black rhinoceros (primary hap 2021 refseq))(info)GCF_020826845.1

Ceratotherium

Ceratotherium simum

Ceratotherium simum simum

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 genbank))(info)GCA_000283155.1

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 refseq))(info)GCF_000283155.1

•Ceratotherium simum cottoni(northern white rhinoceros)(info)GCA_004027795.1

Dicerorhinus

Dicerorhinus sumatrensis

•Dicerorhinus sumatrensis sumatrensis(Sumatran rhinoceros (Ipuh 2017))(info)GCA_002844835.1

Tapiridae

Tapirus

Tapirus indicus

•Tapirus indicus(Asiatic tapir (hap1 2023))(info)GCA_031878655.1

•Tapirus indicus(Asiatic tapir (hap2 2023))(info)GCA_031878705.1

•Tapirus indicus(Asiatic tapir (BS100 BIUU 2019))(info)GCA_004024905.1

•Tapirus terrestris(Brazilian tapir)(info)GCA_004025025.1

Equidae

Equus

Equus caballus

•Equus caballus(horse (maternal 2024))(info)GCA_036418255.1

•Equus caballus(horse (paternal hap 2024))(info)GCA_036426135.1

•Equus caballus(horse (Twilight 2007 genbank))(info)GCA_000002305.1

•Equus caballus(horse (thoroughbred H_3958 2024))(info)GCF_041296265.1

•Equus caballus(horse (Twilight 2018))(info)GCF_002863925.1

Equus asinus

•Equus asinus(ass (Maral har 2015 genbank))(info)GCA_001305755.1

•Equus asinus(ass (Dezhou 2021))(info)GCF_016077325.2

•Equus asinus(ass (Donkey D_3611 2024))(info)GCF_041296235.1

•Equus asinus(ass (Maral har 2015 refseq))(info)GCF_001305755.1

Equus przewalskii

•Equus przewalskii(Przewalski's horse (Burgud 2014 genbank))(info)GCA_000696695.1

•Equus przewalskii(Przewalski's horse (Burgud 2014 refseq))(info)GCF_000696695.1

•Equus przewalskii(Przewalski's horse (Varuska primary hap 2024))(info)GCF_037783145.1

•Equus quagga(plains zebra (Etosha38 2022 UCLA))(info)GCF_021613505.1

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 alternate hap 2022))(info)GCA_024140225.1

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 primary hap 2022))(info)GCF_024139225.1

Crocidura

•Crocidura indochinensis(Indochinese shrew (US011 2019 Broad))(info)GCA_004027635.1

Soricinae

Sorex

Sorex araneus

•Sorex araneus(European shrew (alternate hap 2023))(info)GCA_027595995.1

•Sorex araneus(European shrew (primary hap 2023))(info)GCF_027595985.1

•Sorex araneus(European shrew (GB8-d 2012))(info)GCF_000181275.1

•Sorex fumeus(smoky shrew (2023))(info)GCF_029834395.1

•Erinaceus europaeus(western European hedgehog (alternate hap 2023))(info)GCA_950295305.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 genbank))(info)GCA_950295315.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 refseq))(info)GCF_950295315.1

•Erinaceus europaeus(western European hedgehog (2012 genbank))(info)GCA_000296755.1

•Erinaceus europaeus(western European hedgehog (2012 refseq))(info)GCF_000296755.1

Talpidae

Talpa

Talpa europaea

•Talpa europaea(European mole (hap1 2024))(info)GCA_964194135.1

•Talpa europaea(European mole (hap2 2024))(info)GCA_964194205.1

Talpa occidentalis

•Talpa occidentalis(Iberian mole (v1 TD23 2020))(info)GCF_014898055.1

•Talpa occidentalis(Iberian mole (v2 TD23 2020))(info)GCF_014898055.2

•Talpa occidentalis(Iberian mole (v2.1 TD23 2020))(info)GCF_014898055.3

Scalopus

•Scalopus aquaticus(eastern mole)(info)GCA_004024925.1

Uropsilus

•Uropsilus gracilis(gracile shrew mole)(info)GCA_004024945.1

Galemys

•Galemys pyrenaicus(Pyrenean desman (IBE-C5619 2021))(info)GCA_019455555.1

Condylura

•Condylura cristata(star-nosed mole)(info)GCF_000260355.1

Solenodontidae

Solenodon

•Solenodon paradoxus(Hispaniolan solenodon)(info)GCA_004363575.1

•Manis pentadactyla(Chinese pangolin (hap2 mManPen7 2023))(info)GCA_030020945.1

•Manis pentadactyla(Chinese pangolin (hap1 2023))(info)GCF_030020395.1

•Manis pentadactyla(Chinese pangolin (2020 Yunnan U))(info)GCF_014570555.1

•Manis pentadactyla(Chinese pangolin (MPE899 2014 WashU))(info)GCA_000738955.1

Manis javanica

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 genbank))(info)GCA_001685135.1

•Manis javanica(Malayan pangolin (MJ-LG 2024))(info)GCF_040802235.1

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 refseq))(info)GCF_001685135.1

•Manis javanica(Malayan pangolin YNU ManJav 2.0)(info)GCF_014570535.1