Taxonomy - Brachycera

Taxonomy:

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Taxonomy information:

View on NCBI (taxonomy ID: 7203)

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132 accessions

•Rhagoletis pomonella(apple maggot)(info)GCF_013731165.1

Rhagoletis zephyria

•Rhagoletis zephyria(snowberry fruit fly (East Lansing v1.1 2016))(info)GCF_001687245.2

•Rhagoletis zephyria(snowberry fruit fly (East Lansing v1.0 2016))(info)GCF_001687245.1

Toxotrypanini

Anastrepha

•Anastrepha obliqua(fly A.obliqua (idAnaObli1 2023))(info)GCF_027943255.1

•Anastrepha ludens(Mexican fruit fly (Willacy primary hap 2023))(info)GCF_028408465.1

Dacinae

Dacini

Bactrocera

Bactrocera tyroni species complex

•Bactrocera neohumeralis(flies B.neohumeralis (Rockhampton 2022))(info)GCF_024586455.1

Bactrocera tryoni

•Bactrocera tryoni(Queensland fruit fly (bent wings 2014))(info)GCA_000695345.1

•Bactrocera tryoni(Queensland fruit fly (S06 2021))(info)GCF_016617805.1

•Bactrocera latifrons(fly B.latifrons)(info)GCF_001853355.1

Bactrocera dorsalis complex

Bactrocera dorsalis

•Bactrocera dorsalis(oriental fruit fly (Fly_Bdor 2022))(info)GCF_023373825.1

•Bactrocera dorsalis(oriental fruit fly (Punador 2014))(info)GCF_000789215.1

Bactrocera zonata species complex

Bactrocera zonata

•Bactrocera zonata(peach fruit fly (2024))(info)GCA_043005645.1

•Bactrocera zonata(peach fruit fly (Israel wild type primary hap 2024))(info)GCA_037783105.1

Daculus

Bactrocera oleae

•Bactrocera oleae(olive fruit fly)(info)GCF_001188975.3

•Bactrocera oleae(olive fruit fly (primary hap 2024))(info)GCF_042242935.1

Zeugodacus

Zeugodacus cucurbitae

•Zeugodacus cucurbitae(melon fly (PBARC_wt_2022May primary hap 2023))(info)GCF_028554725.1

•Zeugodacus cucurbitae(melon fly (v2 USDA-PBARC White Pupae T1 2014))(info)GCF_000806345.2

•Zeugodacus cucurbitae(melon fly (v1 USDA-PBARC White Pupae T1 2014))(info)GCF_000806345.1

Ceratitidini

Ceratitis

•Ceratitis capitata(Mediterranean fruit fly)(info)GCF_000347755.3

•Eurosta solidaginis(goldenrod gall fly (ZX-2024a 2024))(info)GCF_040869045.1

Drosophila albomicans

•Drosophila albomicans(fly D.albomicans (v2 15112-1751.03 2022))(info)GCF_009650485.2

•Drosophila albomicans(fly D.albomicans (v1 15112-1751.03 2019))(info)GCF_009650485.1

•Drosophila nasuta(fly D.nasuta (15112-1781.00 2022))(info)GCF_023558535.2

Drosophila sulfurigaster

•Drosophila sulfurigaster albostrigata(fly D.sulfurigaster albostrigata (15112-1811.04 2022))(info)GCF_023558435.1

repleta group

mulleri subgroup

mojavensis species complex

•Drosophila arizonae(fly D.arizonae)(info)GCF_001654025.1

Drosophila mojavensis

•Drosophila mojavensis(fly D.mojavensis (Agencourt 2006))(info)GCF_000005175.2

•Drosophila mojavensis(fly D.mojavensis (Stanford 2021))(info)GCF_018153725.1

•Drosophila navojoa(fly D.navojoa)(info)GCF_001654015.2

hydei subgroup

•Drosophila hydei(fly D.hydei)(info)GCF_003285905.1

quinaria group

Drosophila innubila

•Drosophila innubila(fly D.innubila (TH190305 2019 refseq))(info)GCF_004354385.1

•Drosophila innubila(fly D.innubila (TH190305 2020 genbank))(info)GCA_004354385.2

virilis group

•Drosophila montana(fly D.montana (Dmon_TW-CO22-7 2024))(info)GCF_035044405.1

•Drosophila novamexicana(fly D.novamexicana)(info)GCF_003285875.2

Drosophila virilis

•Drosophila virilis(fly D.virilis)(info)GCF_003285735.1

•Drosophila virilis(fly D.virilis (15010-1051.87 2023))(info)GCF_030788295.1

•Drosophila virilis(fly D.virilis (160 2020))(info)GCA_007989325.2

Sophophora

melanogaster group

ananassae subgroup

ananassae species complex

Drosophila ananassae

•Drosophila ananassae(fly D.ananassae (14024-0371.13 U. Maryland 2021))(info)GCF_017639315.1

•Drosophila ananassae(fly D.ananassae (14024-0371.16-18 U. Chicago 2018))(info)GCF_003285975.2

bipectinata species complex

Drosophila bipectinata

•Drosophila bipectinata(fly D.bipectinata (14024-0381.07 2023))(info)GCF_030179905.1

•Drosophila bipectinata(fly D.bipectinata (BCM 2013))(info)GCF_000236285.1

•Drosophila bipectinata(fly D.bipectinata (Stanford 2021))(info)GCF_018153845.1

suzukii subgroup

Drosophila biarmipes

•Drosophila biarmipes(fly D.biarmipes (14023-0361.09 2024))(info)GCA_035046375.1

•Drosophila biarmipes(fly D.biarmipes (BCM 2013))(info)GCF_000233415.1

•Drosophila biarmipes(fly D.biarmipes (raj3 2022))(info)GCF_025231255.1

•Drosophila biarmipes(fly D.biarmipes (Stanford 2021))(info)GCF_018148935.1

•Drosophila subpulchrella(fly D.subpulchrella)(info)GCF_014743375.2

Drosophila suzukii

•Drosophila suzukii(fly D.suzukii)(info)GCF_013340165.1

•Drosophila suzukii(fly D.suzukii (2024))(info)GCF_043229965.1

•Drosophila suzukii(fly D.suzukii (WT10 2024))(info)GCF_037355615.1

elegans subgroup

Drosophila elegans

•Drosophila elegans(fly D.elegans (Baylor 2013))(info)GCF_000224195.1

•Drosophila elegans(fly D.elegans (Stanford 2021))(info)GCF_018152505.1

•Drosophila gunungcola(fruit fly (Sukarami 2022))(info)GCF_025200985.1

{32348}

•in[0.0000]

melanogaster subgroup

•Drosophila erecta(fly D.erecta)(info)GCF_003286155.1

•Drosophila mauritiana(fly D.mauritiana)(info)GCF_004382145.1

•Drosophila melanogaster(fly D.melanogaster)(info)GCF_000001215.4

•Drosophila orena(fly D.orena (14021-0245.01 2019))(info)GCA_005876975.1

Drosophila santomea

•Drosophila santomea(fly D.santomea (v1.1 2021))(info)GCF_016746245.2

•Drosophila santomea(fly D.santomea (v1.0 2021))(info)GCF_016746245.1

Drosophila sechellia

•Drosophila sechellia(fly D.sechellia (sech25 v2 2019 UC Irvine))(info)GCF_004382195.2

•Drosophila sechellia(fly D.sechellia (sech25 v1 2019 UC Irvine))(info)GCF_004382195.1

Drosophila simulans

•Drosophila simulans(fly D.simulans (w501 v3.1 2021))(info)GCF_016746395.2

•Drosophila simulans(fly D.simulans (WXD1 2019))(info)GCA_004382185.1

•Drosophila simulans(fly D.simulans (w501 v3.0 2021))(info)GCF_016746395.1

•Drosophila teissieri(fly D.teissieri)(info)GCF_016746235.2

Drosophila yakuba

•Drosophila yakuba(fly D.yakuba (v2 2021))(info)GCF_016746365.2

•Drosophila yakuba(fly D.yakuba (2018))(info)GCF_000005975.2

•Drosophila yakuba(fly D.yakuba (v1 2021))(info)GCF_016746365.1

eugracilis subgroup

Drosophila eugracilis

•Drosophila eugracilis(fly D.eugracilis (modENCODE 2013))(info)GCF_000236325.1

•Drosophila eugracilis(fly D.eugracilis (Stanford 2021))(info)GCF_018153835.1

ficusphila subgroup

Drosophila ficusphila

•Drosophila ficusphila(fly D.ficusphila (BCM 2013))(info)GCF_000220665.1

•Drosophila ficusphila(fly D.ficusphila (Stanford 2021))(info)GCF_018152265.1

montium subgroup

Drosophila kikkawai

•Drosophila kikkawai(fly D.kikkawai (14028-0561.14 2023))(info)GCF_030179895.1

•Drosophila kikkawai(fly D.kikkawai (Baylor 2013))(info)GCF_000224215.1

•Drosophila kikkawai(fly D.kikkawai (Stanford 2021))(info)GCF_018152535.1

•Drosophila leontia(fly D.leontia (RGN 210-13 2019))(info)GCA_008042735.1

Drosophila serrata species complex

Drosophila serrata

•Drosophila serrata(fly D.serrata (v1.1 Fors4 2017))(info)GCF_002093755.2

•Drosophila serrata(fly D.serrata (v1.0 Fors4 2017))(info)GCF_002093755.1

rhopaloa subgroup

Drosophila rhopaloa

•Drosophila rhopaloa(fly D.rhopaloa (modENCODE 2013))(info)GCF_000236305.1

•Drosophila rhopaloa(fly D.rhopaloa (Stanford 2021))(info)GCF_018152115.1

takahashii subgroup

Drosophila takahashii

•Drosophila takahashii(fly D.takahashii (BCM 2013))(info)GCF_000224235.1

•Drosophila takahashii(fly D.takahashii (IR98-3 E-12201 2023))(info)GCF_030179915.1

•Drosophila takahashii(fly D.takahashii (Stanford 2021))(info)GCF_018152695.1

obscura group

affinis subgroup

•Drosophila azteca(fly D.azteca (UCSD 14012-1071.03 2019))(info)GCA_005876895.1

obscura subgroup

•Drosophila guanche(fly D.guanche)(info)GCF_900245975.1

Drosophila obscura

•Drosophila obscura(fly D.obscura (Stanford 2021))(info)GCF_018151105.1

•Drosophila obscura(fly D.obscura 14011-0151.01)(info)GCF_002217835.1

•Drosophila subobscura(fly D.subobscura)(info)GCF_008121235.1

pseudoobscura subgroup

•Drosophila lowei(fly D.lowei (Jillo6 2019))(info)GCA_008121275.1

•Drosophila miranda(fly D.miranda)(info)GCF_003369915.1

•Drosophila persimilis(fly D.persimilis)(info)GCF_003286085.1

•Drosophila pseudoobscura(fly D.pseudoobscura)(info)GCF_009870125.1

willistoni group

bocainensis subgroup

•Drosophila nebulosa(fly D.nebulosa (14030-0761.06 2022))(info)GCA_024703675.1

•Drosophila sucinea(fly D.sucinea (14030-0791.01 2021))(info)GCA_018150745.1

willistoni subgroup

•Drosophila tropicalis(fly D.tropicalis (14030-0801.00 2023))(info)GCF_018151085.1

Drosophila willistoni

•Drosophila willistoni(fly D.willistoni (14030-0811.24 2021))(info)GCF_018902025.1

•Drosophila willistoni(fly D.willistoni (TSC 14030-0811.24 2006))(info)GCF_000005925.1

Dorsilopha

•Drosophila busckii(fly D.busckii)(info)GCF_011750605.1

•Drosophila grimshawi(fly D.grimshawi (Agencourt 2006))(info)GCF_000005155.2

•Drosophila grimshawi(fly D.grimshawi (Stanford 2021))(info)GCF_018153295.1

Colocasiomyini

Scaptodrosophila

victoria group

•Scaptodrosophila lebanonensis(fly S.lebanonensis)(info)GCF_003285725.1

Diopsoidea

Diopsidae

Teleopsis

•Teleopsis dalmanni(fly T.dalmanni)(info)GCF_002237135.1

•Lucilia cuprina(Australian sheep blowfly)(info)GCF_000699065.1

•Lucilia cuprina(Australian sheep blowfly (Lc7/37 2022))(info)GCF_022045245.1

•Lucilia sericata(common green bottle fly)(info)GCF_015586225.1

Chrysomyinae

Phormini

Phormia

•Phormia regina(black blowfly (Indy2012f 2016))(info)GCA_001735545.1

Chrysomyini

Chrysomya

•Chrysomya rufifacies(hairy maggot blowfly (CPM2020 2020))(info)GCA_014858695.1

Cochliomyia

Cochliomyia hominivorax

•Cochliomyia hominivorax(primary screw-worm (J06 Research Colony 2022))(info)GCA_004302925.2

•Cochliomyia hominivorax(screw-worm (Jam-Pan-F1 alternate hap 2025))(info)GCA_051144935.1

•Cochliomyia hominivorax(screw-worm (Jam-Pan-F1 primary hap 2025))(info)GCA_051144965.1

Calliphorinae

Calliphora

•Calliphora vicina(urban bluebottle blowfly (primary hap 2023))(info)GCF_958450345.1

•Musca autumnalis(face fly (F117 2025))(info)GCF_047663935.1

Byomya

•Musca vetustissima(fly M.vetustissima (Yass MV318-11 2023))(info)GCF_032173495.1

Musca

Musca domestica

•Musca domestica(house fly (aabys 2013 refseq))(info)GCF_000371365.1

•Musca domestica(house fly (aabys 2023))(info)GCF_030504385.1

•Musca domestica(house fly (aabys 2013 genbank))(info)GCA_000371365.1

Stomoxyini

Haematobia

•Haematobia irritans(horn fly (KBUSLIRL 2025))(info)GCF_050003625.1

Stomoxys

Stomoxys calcitrans

•Stomoxys calcitrans(stable fly (8C7A2A5H3J4 2015 rewfseq))(info)GCF_001015335.1

•Stomoxys calcitrans(stable fly (primary hap 2023))(info)GCF_963082655.1

•Stomoxys calcitrans(stable fly (8C7A2A5H3J4 2015 genbank))(info)GCA_001015335.1

•Glossina fuscipes(tsetse fly (v2 IAEA_lab_2018 2020))(info)GCF_014805625.2

•Glossina fuscipes(tsetse fly (v1 IAEA_lab_2018 2020))(info)GCF_014805625.1

•Glossina fuscipes fuscipes(tsetse fly G.fuscipes fuscipes (2014))(info)GCA_000671735.1

Glossina palpalis

•Glossina palpalis gambiensis(tsetse fly G.palpalis gambiensis (146720 2015))(info)GCA_000818775.1

Glossina

•Glossina austeni(tsetse fly G.austeni (2014))(info)GCA_000688735.1

Glossina morsitans

•Glossina morsitans morsitans(tsetse fly G.morsitans morsitans (Yale 2014))(info)GCA_001077435.1

•Glossina pallidipes(tsetse fly G.pallidipes (2014))(info)GCA_000688715.1

Austenina

•Glossina brevipalpis(tsetse fly G.brevipalpis (2014))(info)GCA_000671755.1

•Megaselia abdita(fly M.abdita (Sander 2025))(info)GCA_048544405.1

•Eupeodes corollae(hoverfly E.corollae (primary hap 2022))(info)GCF_945859685.1

Episyrphus

•Episyrphus balteatus(marmalade hoverfly (primary hap 2022))(info)GCF_945859705.1

•Condylostylus longicornis(fly C.longicornis (FDR11 2023))(info)GCF_029603195.1

•Hermetia illucens(fly H.illucens)(info)GCF_905115235.1