JBrowse 2 genome browser hubs

123 accessions

Taxonomy:

root › cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea

Taxonomy information:

View on NCBI (taxonomy ID: 337687)

•Mus musculus(house mouse C57BL/6J 2020 GRC)(info)GCF_000001635.27

•Mus musculus(house mouse (alternate hap 2023))(info)GCA_949316305.1

•Mus musculus(house mouse (primary hap 2023))(info)GCA_949316315.1

•Mus musculus(house mouse (AKR_J v1 2016))(info)GCA_001624295.1

•Mus musculus(house mouse (A_J v1 2016))(info)GCA_001624215.1

•Mus musculus(house mouse (BALB_cJ v1 2016))(info)GCA_001632525.1

•Mus musculus(house mouse (C3H_HeJ v1 2016))(info)GCA_001632575.1

•Mus musculus(house mouse (CBA_J v1 2016))(info)GCA_001624475.1

•Mus musculus(house mouse (DBA_2J v1 2016))(info)GCA_001624505.1

•Mus musculus(house mouse (FVB_NJ v1 2016))(info)GCA_001624535.1

•Mus musculus(house mouse (GRCm38.p6 2017))(info)GCF_000001635.26

•Mus musculus(house mouse (LP_J v1 2016))(info)GCA_001632615.1

•Mus musculus(house mouse (NOD_ShiLtJ v1 2016))(info)GCA_001624675.1

•Mus musculus(house mouse (NZO_HlLtJ v1 2016))(info)GCA_001624745.1

•Mus musculus(house mouse (129S1_SvImJv1 2016))(info)GCA_001624185.1

•Mus musculus(house mouse (129S1_SvImJ_v3 2022))(info)GCA_921998555.2

•Mus musculus(house mouse (AKR_J v3 2022))(info)GCA_922000895.2

•Mus musculus(house mouse (A_J v3 2022))(info)GCA_921998355.2

•Mus musculus(house mouse (BALB_cJ v3 2022))(info)GCA_921997145.2

•Mus musculus(house mouse (C3H_HeJ v3 2022))(info)GCA_921997125.2

•Mus musculus(house mouse (C57BL_6J T2T 2024))(info)GCA_964188535.1

•Mus musculus(house mouse (CBA_J v3 2022))(info)GCA_921998905.2

•Mus musculus(house mouse (DBA_2J v3 2022))(info)GCA_921998315.2

•Mus musculus(house mouse (FVB_NJ v3 2022))(info)GCA_921998635.2

•Mus musculus(house mouse (LP_J v3 2022))(info)GCA_947599735.1

•Mus musculus(house mouse (NOD_ShiLtJ v3 2022))(info)GCA_921998325.2

•Mus musculus(house mouse (NZO_HlLtJ v3 2022))(info)GCA_947593165.1

•Mus musculus(house mouse C57BL_6NJ (2016))(info)GCA_001632555.1

•Mus musculus(house mouse C57BL_6NJ (2022))(info)GCA_921999865.2

Mus musculus musculus

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v1 2016))(info)GCA_001624775.1

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v2 2022))(info)GCA_921998335.2

Mus musculus domesticus

•Mus musculus domesticus(western European house mouse (WSB_EiJ v1 2016))(info)GCA_001624835.1

•Mus musculus domesticus(western European house mouse (WSB_EiJ v3 2022))(info)GCA_921998345.2

•Mus musculus molossinus(Japanese wild mouse (2022))(info)GCA_921999095.2

Mus musculus castaneus

•Mus musculus castaneus(Southeastern Asian house mouse (2016))(info)GCA_001624445.1

•Mus musculus castaneus(Southeastern Asian house mouse (2022))(info)GCA_921999005.2

•Mus musculus castaneus(Southeastern Asian house mouse (T2T 2024))(info)GCA_964188545.1

Mus caroli

•Mus caroli(Ryukyu mouse (v1 2017 EBI genbank))(info)GCA_900094665.2

•Mus caroli(Ryukyu mouse (v1 2017 EBI refseq))(info)GCF_900094665.1

•Mus caroli(Ryukyu mouse (v2 2017))(info)GCF_900094665.2

Mus spretus

•Mus spretus(western wild mouse (SPRET_EiJ v1 2016))(info)GCA_001624865.1

•Mus spretus(western wild mouse (SPRET_EiJ v3 2022))(info)GCA_921997135.2

•Mus spicilegus(steppe mouse (ZRU 2018))(info)GCA_003336285.1

Coelomys

•Mus pahari(shrew mouse)(info)GCF_900095145.1

Rattus

Rattus norvegicus

•Rattus norvegicus(Norway rat BN7.2)(info)GCF_015227675.2

•Rattus norvegicus(Norway rat BN7 haplotype)(info)GCA_015244455.1

•Rattus norvegicus(Norway rat BN7 genbank)(info)GCA_015227675.2

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 genbank))(info)GCA_036323735.1

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 refseq))(info)GCF_036323735.1

•Rattus norvegicus(Norway rat (F344/Stm 2024))(info)GCA_041222355.1

•Rattus norvegicus(Norway rat celera)(info)GCF_000002265.2

•Rattus norvegicus(Norway rat Rnor6.0)(info)GCF_000001895.5

•Rattus norvegicus(Norway rat SHR/Utx RGD_8142385 2022)(info)GCA_023515785.1

•Rattus norvegicus(Norway rat SHRSP/BppUtx 2022)(info)GCA_021556685.1

•Rattus norvegicus(Norway rat WKY/Bbb 2022)(info)GCA_023515805.1

•Rattus rattus(black rat)(info)GCF_011064425.1

Arvicanthis

Arvicanthis niloticus

•Arvicanthis niloticus(African grass rat (maternal 2020))(info)GCA_011750645.1

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 genbank))(info)GCA_011762505.1

•Arvicanthis niloticus(African grass rat (v2 paternal X 2024 genbank))(info)GCA_011762505.2

•Arvicanthis niloticus(African grass rat (v3 paternal hap 2024))(info)GCA_011762505.3

•Arvicanthis niloticus(African grass rat (paternal 2020))(info)GCA_011762545.1

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 refseq))(info)GCF_011762505.1

•Arvicanthis niloticus(African grass rat (v2 paternal X 2025 refseq))(info)GCF_011762505.2

Apodemus

Sylvaemus group

Apodemus sylvaticus

•Apodemus sylvaticus(European woodmouse (2022 genbank))(info)GCA_947179515.1

•Apodemus sylvaticus(European woodmouse (alternate hap 2022))(info)GCA_947179525.1

•Apodemus sylvaticus(European woodmouse (2022 refseq))(info)GCF_947179515.1

•Apodemus agrarius(Eurasian field mouse (2024))(info)GCA_964023405.1

•Apodemus speciosus(large Japanese field mouse (IB14-021 2017))(info)GCA_002335545.1

Micromys

•Micromys minutus(European harvest mouse (primary hap 2024))(info)GCA_963924665.1

Mastomys

•Mastomys coucha(southern multimammate mouse)(info)GCF_008632895.1

Grammomys

•Grammomys surdaster(woodland thicket rat)(info)GCF_004785775.1

Deomyinae

Acomys

•Acomys minous(Crete spiny mouse (2024))(info)GCA_964271855.1

•Acomys russatus(golden spiny mouse (2020))(info)GCF_903995435.1

•Acomys dimidiatus(eastern spiny mouse (2021))(info)GCA_907164435.1

•Acomys cahirinus(Egyptian spiny mouse (US019 2019))(info)GCA_004027535.1

Gerbillinae

Meriones

Meriones unguiculatus

•Meriones unguiculatus(Mongolian gerbil (US013 2019 Broad))(info)GCA_004026785.1

•Meriones unguiculatus(Mongolian gerbil (243 2017 Lucigen Corp.))(info)GCF_002204375.1

•Meriones unguiculatus(Mongolian gerbil (EAM2014 2019 BGI))(info)GCA_008131255.1

•Meriones unguiculatus(Mongolian gerbil (TT.TT164.6M 2023))(info)GCF_030254825.1

Psammomys

Psammomys obesus

•Psammomys obesus(fat sand rat (mPsaObe1 2021))(info)GCF_907164565.1

•Psammomys obesus(fat sand rat (Psa_ob012049795 2017))(info)GCA_002215935.1

Cricetidae

Arvicolinae

Microtus

Microtus californicus

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 primary hap 2023))(info)GCA_028537955.1

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 alternate hap 2023))(info)GCA_028537755.1

Microtus pennsylvanicus

•Microtus pennsylvanicus(meadow vole (hap1 2024 genbank))(info)GCA_037038515.1

•Microtus pennsylvanicus(meadow vole (hap2 2024))(info)GCA_037039175.1

•Microtus pennsylvanicus(meadow vole (hap1 2024 refseq))(info)GCF_037038515.1

•Microtus oregoni(creeping vole)(info)GCF_018167655.1

•Microtus ochrogaster(prairie vole)(info)GCF_000317375.1

Arvicola

Arvicola amphibius

•Arvicola amphibius(Eurasian water vole (alternate hap 2020))(info)GCA_903992525.1

•Arvicola amphibius(Eurasian water vole (v1 2020))(info)GCF_903992535.1

•Arvicola amphibius(Eurasian water vole (v2 2021))(info)GCF_903992535.2

Chionomys

Chionomys nivalis

•Chionomys nivalis(European snow vole (alternate hap 2023))(info)GCA_950005115.1

•Chionomys nivalis(European snow vole (primary hap 2023 refseq))(info)GCF_950005125.1

•Chionomys nivalis(European snow vole (primary hap 2023 genbank))(info)GCA_950005125.1

Myodes

•Myodes glareolus(bank vole)(info)GCF_902806735.1

Ondatra

•Ondatra zibethicus(muskrat)(info)GCA_004026605.1

Ellobius

•Ellobius talpinus(northern mole vole)(info)GCA_001685095.1

Alexandromys

•Alexandromys fortis(reed vole (MF-2015 2020))(info)GCF_014885135.2

Neotominae

Peromyscus

Peromyscus maniculatus

Peromyscus maniculatus sonoriensis

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 alternate hap 2022))(info)GCA_026167925.1

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 primary hap 2022))(info)GCA_026229955.1

Peromyscus maniculatus bairdii

•Peromyscus maniculatus bairdii(prairie deer mouse (Baylor 2013))(info)GCF_000500345.1

•Peromyscus maniculatus bairdii(prairie deer mouse (Harvard 2020))(info)GCF_003704035.1

Peromyscus leucopus

•Peromyscus leucopus(white-footed mouse)(info)GCF_004664715.1

•Peromyscus leucopus(white-footed mouse (LL stock 2020))(info)GCF_004664715.2

•Peromyscus eremicus(cactus mouse (2023))(info)GCF_949786415.1

Peromyscus californicus

•Peromyscus californicus insignis(California mouse (IS 2022))(info)GCF_007827085.1

Onychomys

Onychomys torridus

•Onychomys torridus(southern grasshopper mouse (2020))(info)GCF_903995425.1

•Onychomys torridus(southern grasshopper mouse (US017 2019 Broad))(info)GCA_004026725.1

Cricetinae

Cricetulus

Cricetulus griseus

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2018))(info)GCF_003668045.1

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2020))(info)GCF_003668045.3

•Cricetulus griseus(Chinese hamster (CHO v1 2011 BGI))(info)GCF_000223135.1

•Cricetulus griseus(Chinese hamster (CHO v2 2017 Eagle Genomics Ltd))(info)GCA_900186095.1

•Cricetulus griseus(Chinese hamster (CHO-K1 CHOZN v2.4 2022))(info)GCA_026545065.1

Mesocricetus

Mesocricetus auratus

•Mesocricetus auratus(golden hamster (Baylor 2013 genbank))(info)GCA_000349665.1

•Mesocricetus auratus(golden hamster (Baylor 2021))(info)GCF_017639785.1

•Mesocricetus auratus(golden hamster (Broad 2013 refseq))(info)GCF_000349665.1

Phodopus

•Phodopus roborovskii(desert hamster (2022))(info)GCF_943737965.1

•Phodopus sungorus(Siberian hamster (SSSS 2022))(info)GCA_023856395.1

Sigmodontinae

Sigmodon

•Sigmodon hispidus(hispid cotton rat)(info)GCA_004025045.1

Bramus

•Bramus lutescens(Transcaucasian mole vole)(info)GCA_001685075.1

•Nannospalax galili(Upper Galilee mountains blind mole rat (#2095 2014 genbank))(info)GCA_000622305.1

•Nannospalax galili(Upper Galilee mountains blind mole rat (2095 2014 refseq))(info)GCF_000622305.1

Nesomyidae

Cricetomyinae

Cricetomys

•Cricetomys gambianus(Gambian giant pouched rat)(info)GCA_004027575.1