JBrowse 2 genome browser hubs

69 accessions

Taxonomy:

root › Viruses › Riboviria › Orthornavirae › Pisuviricota › Pisoniviricetes › Nidovirales › Cornidovirineae › Coronaviridae › Orthocoronavirinae

Taxonomy information:

View on NCBI (taxonomy ID: 2501931)

Orthocoronavirinae

Betacoronavirus

Merbecovirus

Betacoronavirus cameli

Middle East respiratory syndrome-related coronavirus

•Middle East respiratory syndrome-related coronavirus(Middle East respiratory syndrome-related coronavirus (HCoV-EMC HCoV-EMC/2012 2012))(info)GCF_000901155.1

•Betacoronavirus England 1(Betacoronavirus (England 1 H123990006 2018))(info)GCF_002816195.1

Betacoronavirus erinacei

Hedgehog coronavirus 1

•Betacoronavirus Erinaceus/VMC/DEU/2012(Betacoronavirus Erinaceus/VMC/DEU/2012 (ErinaceusCoV/2012-174/GER/2012 2018))(info)GCF_002816175.1

Betacoronavirus pipistrelli

•Pipistrellus bat coronavirus HKU5(Pipistrellus bat coronavirus HKU5 (HKU5-1 LMH03f 2007))(info)GCF_000873025.1

Betacoronavirus tylonycteridis

•Tylonycteris bat coronavirus HKU4(Tylonycteris bat coronavirus HKU4 (HKU4-1 B04f 2007))(info)GCF_000870505.1

Embecovirus

Betacoronavirus hongkongense

•Human coronavirus HKU1(human coronavirus HKU1 (HKU1 2004))(info)GCF_000858765.1

Betacoronavirus gravedinis

Betacoronavirus 1

•Human coronavirus OC43(human coronavirus OC43 (ATCC VR-759 2019))(info)GCF_003972325.1

•Bovine coronavirus(Bovine coronavirus (BCoV-ENT 2001))(info)GCF_000862505.1

Betacoronavirus ratti

China Rattus coronavirus HKU24

•Betacoronavirus HKU24(Betacoronavirus HKU24 (HKU24-R05005I 2015))(info)GCF_000930095.1

Betacoronavirus muris

Murine coronavirus

Murine hepatitis virus

•Murine hepatitis virus(Murine hepatitis virus (A59 2020))(info)GCF_003971785.1

•Murine hepatitis virus(Murine hepatitis virus (MHV-A59 2000))(info)GCF_000862345.1

Rat coronavirus

•Rat coronavirus Parker(Rat coronavirus (Parker 2009))(info)GCF_000886515.1

unclassified Embecovirus

•Rabbit coronavirus HKU14(Rabbit coronavirus HKU14 (HKU14-1 2012))(info)GCF_000896935.1

Sarbecovirus

Betacoronavirus pandemicum

Severe acute respiratory syndrome-related coronavirus

Severe acute respiratory syndrome coronavirus

•SARS coronavirus Tor2(SARS coronavirus Tor2 (Tor2 2003))(info)GCF_000864885.1

•Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2 (Jan 2020 COVID-19))(info)GCF_009858895.2

unclassified Sarbecovirus

•Bat coronavirus BM48-31/BGR/2008(Bat coronavirus BM48-31/BGR/2008 (BtCoV/BM48-31/BGR/2008 2010))(info)GCF_000887595.1

Hibecovirus

Betacoronavirus hipposideri

Bat Hp-betacoronavirus Zhejiang2013

•Bat Hp-betacoronavirus/Zhejiang2013(Bat Hp-betacoronavirus/Zhejiang2013 (Zhejiang2013 2014))(info)GCF_000926915.1

Nobecovirus

Betacoronavirus cororeum

Rousettus bat coronavirus GCCDC1

•Rousettus bat coronavirus(Rousettus bat coronavirus (GCCDC1 356 2016))(info)GCF_001725835.1

Betacoronavirus rousetti

•Rousettus bat coronavirus HKU9(Rousettus bat coronavirus HKU9 (HKU9-1 BF_005I 2007))(info)GCF_000868045.1

Alphacoronavirus

Duvinacovirus

Alphacoronavirus chicagoense

Human coronavirus 229E

•Human coronavirus 229E(human coronavirus 229E (2001))(info)GCF_000853505.1

•Camel alphacoronavirus(Camel alphacoronavirus (camel/Riyadh/Ry141/2015 2016))(info)GCF_001500975.1

Setracovirus

Alphacoronavirus amsterdamense

•Human coronavirus NL63(human coronavirus NL63 (Amsterdam I 2004))(info)GCF_000853865.1

Alphacoronavirus triaenopis

NL63-related bat coronavirus

•NL63-related bat coronavirus(NL63-related bat coronavirus (BtKYNL63-9a 2016))(info)GCF_001904885.1

•NL63-related bat coronavirus(NL63-related bat coronavirus (BtKYNL63-9b 2020))(info)GCF_003972065.1

Nyctacovirus

Alphacoronavirus pipistrelli

Pipistrellus kuhlii coronavirus 3398

•Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015(Alphacoronavirus (Bat-CoV/P.kuhlii/Italy/3398-19/2015 2020))(info)GCF_012271735.1

Alphacoronavirus nyctali

Nyctalus velutinus alphacoronavirus SC-2013

•BtNv-AlphaCoV/SC2013(BtNv-AlphaCoV/SC2013 (BtNv-SC2013 2016))(info)GCF_001505415.1

Alphacoronavirus tylonycteridis

Alphacoronavirus HKU33

•Tylonycteris bat coronavirus HKU33(Tylonycteris bat coronavirus HKU33 (GZ151867 2023))(info)GCF_023124615.1

unclassified Alphacoronavirus

Alphacoronavirus sp.

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA1087 2023))(info)GCF_023124385.1

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA2028 2023))(info)GCF_023124395.1

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA3607 2023))(info)GCF_023124405.1

Bat alphacoronavirus

•Bat alphacoronavirus(Bat alphacoronavirus (AMA_L_F 2023))(info)GCF_023148835.1

•Bat alphacoronavirus(Bat alphacoronavirus (BtCoV/020_16/M.dau/FIN/2016 2023))(info)GCF_023122875.1

Wencheng Sm shrew coronavirus

•Wencheng Sm shrew coronavirus(Wencheng Sm shrew coronavirus (Xingguo-101 2017))(info)GCF_002219865.1

•Wencheng Sm shrew coronavirus(Wencheng Sm shrew coronavirus (Xingguo-74 2020))(info)GCF_012271635.1

Minunacovirus

Alphacoronavirus pusilli

Miniopterus bat coronavirus 1

•Bat coronavirus 1A(Bat coronavirus 1A (AFCD62 2008))(info)GCF_000879255.1

Alphacoronavirus miniopteri

•Miniopterus bat coronavirus HKU8(Miniopterus bat coronavirus HKU8 (AFCD77 2008))(info)GCF_000879875.1

Colacovirus

Alphacoronavirus myotis

Bat coronavirus CDPHE15

•Bat coronavirus CDPHE15/USA/2006(Bat coronavirus CDPHE15/USA/2006 (bat/USA/CDPHE15/2006 2013))(info)GCF_000913415.1

Myotacovirus

Alphacoronavirus ricketti

Myotis ricketti alphacoronavirus Sax-2011

•BtMr-AlphaCoV/SAX2011(BtMr-AlphaCoV/SAX2011 (BtMr-SAX2011 2016))(info)GCF_001503155.1

Decacovirus

Alphacoronavirus ferrumequini

Rhinolophus ferrumequinum alphacoronavirus HuB-2013

•BtRf-AlphaCoV/HuB2013(BtRf-AlphaCoV/HuB2013 (BtRf-HuB2013 2016))(info)GCF_001504755.1

Alphacoronavirus hipposideri

Alphacoronavirus CHB25

•Hipposideros pomona bat coronavirus CHB25(Hipposideros pomona bat coronavirus CHB25 (CHB0025 2023))(info)GCF_023141795.1

Alphacoronavirus rousetti

Bat coronavirus HKU10

•Rousettus bat coronavirus HKU10(Rousettus bat coronavirus HKU10 (183A 2012))(info)GCF_000899495.1

Rhinacovirus

unclassified Rhinacovirus

•BtRf-AlphaCoV/YN2012(BtRf-AlphaCoV/YN2012 (BtRf-YN2012 2016))(info)GCF_001501755.1

Alphacoronavirus rhinolophi

•Rhinolophus bat coronavirus HKU2(Rhinolophus bat coronavirus HKU2 (HKU2/GD/430/2006 2007))(info)GCF_000875645.1

Luchacovirus

unclassified Luchacovirus

•Coronavirus AcCoV-JC34(Coronavirus (AcCoV-JC34 2017))(info)GCF_002194405.1

Alphacoronavirus ratti

•Lucheng Rn rat coronavirus(Lucheng Rn rat coronavirus (Lucheng-19 2017))(info)GCF_001962315.1

Tegacovirus

Alphacoronavirus suis

Alphacoronavirus 1

Feline coronavirus

•Feline infectious peritonitis virus(Feline infectious peritonitis virus (79-1146 2010))(info)GCF_000856025.1

•Swine enteric coronavirus(Swine enteric coronavirus (Italy/213306/2009 2016))(info)GCF_001501415.1

•Transmissible gastroenteritis virus(Transmissible gastroenteritis virus (Purdue PUR46-MAD 2018))(info)GCF_002985995.1

Minacovirus

Alphacoronavirus neovisontis

•Ferret coronavirus(Ferret coronavirus (FRCoV-NL-2010 2016))(info)GCF_001661775.1

Mink coronavirus 1

•Mink coronavirus strain WD1127(Mink coronavirus strain (WD1127 2014))(info)GCF_000919475.1

Pedacovirus

Alphacoronavirus porci

•Porcine epidemic diarrhea virus(Porcine epidemic diarrhea virus (CV777 2002))(info)GCF_000848685.1

Alphacoronavirus scotophili

•Scotophilus bat coronavirus 512(Scotophilus bat coronavirus 512 (BtCoV/512/2005 2007))(info)GCF_000870985.1

Gammacoronavirus

Cegacovirus

Gammacoronavirus delphinapteri

•Beluga whale coronavirus SW1(Beluga whale coronavirus (SW1 2008))(info)GCF_000872845.1

unclassified Gammacoronavirus

•Canada goose coronavirus(Canada goose coronavirus (Cambridge_Bay_2017 2020))(info)GCF_012271745.1

Igacovirus

Gammacoronavirus galli

Avian coronavirus

•Duck coronavirus(Duck coronavirus (DK/GD/27/2014 2020))(info)GCF_012271565.1

Infectious bronchitis virus

•Infectious bronchitis virus(Infectious bronchitis virus (Beaudette 2000))(info)GCF_000862965.1

•Infectious bronchitis virus(Infectious bronchitis virus (Ind-TN92-03 2020))(info)GCF_012271575.1

•Turkey coronavirus(Turkey coronavirus (MG10 2008))(info)GCF_000880055.1

Deltacoronavirus

Buldecovirus

Deltacoronavirus pycnonoti

Bulbul coronavirus HKU11

•Bulbul coronavirus HKU11-934(Bulbul coronavirus HKU11-934 (2018))(info)GCF_002816215.1

Deltacoronavirus gallinulae

•Common moorhen coronavirus HKU21(Common moorhen coronavirus HKU21 (HKU21-8295 2012))(info)GCF_000896895.1

unclassified Buldecovirus

•Magpie-robin coronavirus HKU18(Magpie-robin coronavirus HKU18 (HKU18-chu3 2012))(info)GCF_000894435.1

•Sparrow coronavirus HKU17(Sparrow coronavirus HKU17 (HKU17-6124 2012))(info)GCF_000868165.1

•Thrush coronavirus HKU12-600(Thrush coronavirus HKU12-600 (2008))(info)GCF_000883335.1

Deltacoronavirus lonchurae

Munia coronavirus HKU13

•Munia coronavirus HKU13-3514(Munia coronavirus HKU13-3514 (2008))(info)GCF_000880835.1

Deltacoronavirus suis

Coronavirus HKU15

•Porcine coronavirus HKU15(Porcine coronavirus HKU15 (HKU15-155 2018))(info)GCF_002816235.1

Deltacoronavirus zosteropis

•White-eye coronavirus HKU16(White-eye coronavirus HKU16 (HKU16-6847 2012))(info)GCF_000896875.1

Herdecovirus

Deltacoronavirus nycticoracis

•Night heron coronavirus HKU19(Night heron coronavirus HKU19 (HKU19-6918 2012))(info)GCF_000896035.1

Andecovirus

Deltacoronavirus marecae

•Wigeon coronavirus HKU20(Wigeon coronavirus HKU20 (HKU20-9243 2012))(info)GCF_000895415.1

unclassified Orthocoronavirinae

•Shrew coronavirus(Shrew coronavirus (Shrew-CoV/Tibet2014 2020))(info)GCF_012271625.1