JBrowse 2 genome browser hubs

33 accessions

Taxonomy:

root › Viruses › Riboviria › Orthornavirae › Pisuviricota › Pisoniviricetes › Nidovirales › Cornidovirineae › Coronaviridae › Orthocoronavirinae › Alphacoronavirus

Taxonomy information:

View on NCBI (taxonomy ID: 693996)

Alphacoronavirus

Alphacoronavirus chicagoense

Human coronavirus 229E

•Human coronavirus 229E(human coronavirus 229E (2001))(info)GCF_000853505.1

•Camel alphacoronavirus(Camel alphacoronavirus (camel/Riyadh/Ry141/2015 2016))(info)GCF_001500975.1

Alphacoronavirus amsterdamense

•Human coronavirus NL63(human coronavirus NL63 (Amsterdam I 2004))(info)GCF_000853865.1

Alphacoronavirus triaenopis

NL63-related bat coronavirus strain BtKYNL63-9b

NL63-related bat coronavirus

•NL63-related bat coronavirus(NL63-related bat coronavirus (BtKYNL63-9a 2016))(info)GCF_001904885.1

•NL63-related bat coronavirus(NL63-related bat coronavirus (BtKYNL63-9b 2020))(info)GCF_003972065.1

Alphacoronavirus pipistrelli

Pipistrellus kuhlii coronavirus 3398

•Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015(Alphacoronavirus (Bat-CoV/P.kuhlii/Italy/3398-19/2015 2020))(info)GCF_012271735.1

Alphacoronavirus nyctali

Nyctalus velutinus alphacoronavirus SC-2013

•BtNv-AlphaCoV/SC2013(BtNv-AlphaCoV/SC2013 (BtNv-SC2013 2016))(info)GCF_001505415.1

Alphacoronavirus tylonycteridis

Alphacoronavirus HKU33

•Tylonycteris bat coronavirus HKU33(Tylonycteris bat coronavirus HKU33 (GZ151867 2023))(info)GCF_023124615.1

unclassified Alphacoronavirus

Alphacoronavirus sp.

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA1087 2023))(info)GCF_023124385.1

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA2028 2023))(info)GCF_023124395.1

•Alphacoronavirus sp.(Alphacoronavirus sp. (WA3607 2023))(info)GCF_023124405.1

Bat alphacoronavirus

•Bat alphacoronavirus(Bat alphacoronavirus (AMA_L_F 2023))(info)GCF_023148835.1

•Bat alphacoronavirus(Bat alphacoronavirus (BtCoV/020_16/M.dau/FIN/2016 2023))(info)GCF_023122875.1

Wencheng Sm shrew coronavirus

•Wencheng Sm shrew coronavirus(Wencheng Sm shrew coronavirus (Xingguo-101 2017))(info)GCF_002219865.1

•Wencheng Sm shrew coronavirus(Wencheng Sm shrew coronavirus (Xingguo-74 2020))(info)GCF_012271635.1

Alphacoronavirus pusilli

Miniopterus bat coronavirus 1

•Bat coronavirus 1A(Bat coronavirus 1A (AFCD62 2008))(info)GCF_000879255.1

Alphacoronavirus miniopteri

•Miniopterus bat coronavirus HKU8(Miniopterus bat coronavirus HKU8 (AFCD77 2008))(info)GCF_000879875.1

Alphacoronavirus myotis

Bat coronavirus CDPHE15

•Bat coronavirus CDPHE15/USA/2006(Bat coronavirus CDPHE15/USA/2006 (bat/USA/CDPHE15/2006 2013))(info)GCF_000913415.1

Alphacoronavirus ricketti

Myotis ricketti alphacoronavirus Sax-2011

•BtMr-AlphaCoV/SAX2011(BtMr-AlphaCoV/SAX2011 (BtMr-SAX2011 2016))(info)GCF_001503155.1

Alphacoronavirus ferrumequini

Rhinolophus ferrumequinum alphacoronavirus HuB-2013

•BtRf-AlphaCoV/HuB2013(BtRf-AlphaCoV/HuB2013 (BtRf-HuB2013 2016))(info)GCF_001504755.1

Alphacoronavirus hipposideri

Alphacoronavirus CHB25

•Hipposideros pomona bat coronavirus CHB25(Hipposideros pomona bat coronavirus CHB25 (CHB0025 2023))(info)GCF_023141795.1

Alphacoronavirus rousetti

Bat coronavirus HKU10

•Rousettus bat coronavirus HKU10(Rousettus bat coronavirus HKU10 (183A 2012))(info)GCF_000899495.1

unclassified Rhinacovirus

•BtRf-AlphaCoV/YN2012(BtRf-AlphaCoV/YN2012 (BtRf-YN2012 2016))(info)GCF_001501755.1

Alphacoronavirus rhinolophi

•Rhinolophus bat coronavirus HKU2(Rhinolophus bat coronavirus HKU2 (HKU2/GD/430/2006 2007))(info)GCF_000875645.1

unclassified Luchacovirus

•Coronavirus AcCoV-JC34(Coronavirus (AcCoV-JC34 2017))(info)GCF_002194405.1

Alphacoronavirus ratti

•Lucheng Rn rat coronavirus(Lucheng Rn rat coronavirus (Lucheng-19 2017))(info)GCF_001962315.1

Alphacoronavirus suis

Alphacoronavirus 1

Feline coronavirus

•Feline infectious peritonitis virus(Feline infectious peritonitis virus (79-1146 2010))(info)GCF_000856025.1

•Swine enteric coronavirus(Swine enteric coronavirus (Italy/213306/2009 2016))(info)GCF_001501415.1

•Transmissible gastroenteritis virus(Transmissible gastroenteritis virus (Purdue PUR46-MAD 2018))(info)GCF_002985995.1

Alphacoronavirus neovisontis

•Ferret coronavirus(Ferret coronavirus (FRCoV-NL-2010 2016))(info)GCF_001661775.1

Mink coronavirus 1

•Mink coronavirus strain WD1127(Mink coronavirus strain (WD1127 2014))(info)GCF_000919475.1

Alphacoronavirus porci

•Porcine epidemic diarrhea virus(Porcine epidemic diarrhea virus (CV777 2002))(info)GCF_000848685.1

Alphacoronavirus scotophili

•Scotophilus bat coronavirus 512(Scotophilus bat coronavirus 512 (BtCoV/512/2005 2007))(info)GCF_000870985.1