JBrowse 2 genome browser hubs

349 accessions

Taxonomy:

root › cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliopsida › Mesangiospermae

Taxonomy information:

View on NCBI (taxonomy ID: 1437183)

Umbellularia californica

•Umbellularia californica(bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 alternate hap 2023))(info)GCA_028538565.1

•Umbellularia californica(bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 primary hap 2023))(info)GCA_028534965.1

Piperales

Aristolochiaceae

Aristolochia

•Aristolochia californica(California pipevine (CCGP_79_NKW_82.1479hap1 2023))(info)GCF_029961685.1

Magnoliales

Magnoliaceae

Magnolia

•Magnolia sinica(Magnolia sinica (HGM2019 2023))(info)GCF_029962835.1

Canellales

Winteraceae

Tasmannia

•Tasmannia lanceolata(Tasmanian pepperberry (RefF3 2024))(info)GCF_043159265.1

Arctostaphylos glauca

•Arctostaphylos glauca(bigberry manzanita (GLNDR_RDG_Rd-6 primary hap 2022))(info)GCA_019985065.2

•Arctostaphylos glauca(bigberry manzanita (GLNDR_RDG_Rd-6 alternate hap 2021))(info)GCA_019985075.1

Ericoideae

Rhodoreae

Rhododendron

•Rhododendron vialii(Rhododendron vialii eudicots (Sample 1 2023))(info)GCF_030253575.1

Polemoniaceae

Linanthus

Linanthus parryae

•Linanthus parryae(sandblossoms (Phelan CA IGA184 alternate hap 2022))(info)GCA_023055565.1

•Linanthus parryae(sandblossoms (Phelan CA IGA184 primary hap 2022))(info)GCA_023055425.1

Actinidiaceae

Actinidia

Actinidia eriantha

•Actinidia eriantha(A. eriantha gooseberry (White 2019))(info)GCA_004150315.1

•Actinidia eriantha(A.eriantha eudicots (MHT-2021 2021))(info)GCF_019202715.1

Actinidia chinensis

•Actinidia chinensis(golden kiwifruit (Hongyang 2019))(info)GCA_009663005.1

•Actinidia chinensis var. chinensis(golden kiwifruit (Red5 2018))(info)GCA_003024255.1

Theaceae

Camellia

•Camellia sinensis(black tea)(info)GCF_004153795.1

Ebenaceae

Diospyros

•Diospyros lotus(date-plum (Yz01 2020))(info)GCF_014633365.1

Balsaminaceae

Impatiens

•Impatiens glandulifera(Himalayan balsam (dImpGla2.1 2021))(info)GCF_907164915.1

•Capsicum annuum(capsicum (Zunla-1 2015 genbank))(info)GCA_000710875.1

•Capsicum annuum(bell pepper eudicots (UCD-10X-F1 2018))(info)GCF_002878395.1

•Capsicum annuum(capsicum (Zunla-1 2015 refseq))(info)GCF_000710875.1

•Capsicum chinense(habanero-type pepper (PI159236 2017))(info)GCA_002271895.2

Solaneae

Solanum

Solanum subgen. Lycopersicon

Solanum lycopersicum

•Solanum lycopersicum(tomato (v3.0 Heinz 1706 2018))(info)GCF_000188115.4

•Solanum lycopersicum(tomato (2024))(info)GCF_036512215.1

•Solanum lycopersicum(tomato (v3.1 Heinz 1706 2018))(info)GCF_000188115.5

•Solanum pennellii(wild tomato S.pennellii)(info)GCF_001406875.1

•Solanum dulcamara(climbing nightshade (primary hap 2022))(info)GCF_947179165.1

•Solanum virginianum(eggplant (2014))(info)GCA_000787875.1

•Solanum stenotomum(potato S.stenotomum (F172 2021))(info)GCF_019186545.1

Solanum tuberosum

•Solanum tuberosum(potato S.tuberosum (alt pseudohaplotype RH89-039-16 2020))(info)GCA_014189305.1

•Solanum tuberosum(potato S.tuberosum (Dihaploid 'C-13' 2020))(info)GCA_010127505.1

•Solanum tuberosum(potato S.tuberosum (DM 1-3 516 R44 2011))(info)GCF_000226075.1

•Solanum tuberosum(potato S.tuberosum (hap 1 of 4 Otava Stieglitz 2021))(info)GCA_020169555.1

•Solanum tuberosum(potato S.tuberosum (hap 2 of 4 Otava Stieglitz 2021))(info)GCA_020169535.1

•Solanum tuberosum(potato S.tuberosum (hap 3 of 4 Otava Hera 2021))(info)GCA_020169585.1

•Solanum tuberosum(potato S.tuberosum (hap 4 of 4 Otava Hera 2021))(info)GCA_020169575.1

•Solanum tuberosum(potato S.tuberosum (RH89-039-16 2020))(info)GCA_014189475.1

•Solanum verrucosum(potato S.verrucosum (2019))(info)GCF_900185275.1

Lycieae

Lycium

•Lycium ferocissimum(African boxthorn (CSIRO_LF1 2023))(info)GCF_029784015.1

•Lycium barbarum(goji berry (Lr01 2021))(info)GCF_019175385.1

•Nicotiana tabacum(common tobacco (K326 2023))(info)GCF_000715075.1

•Nicotiana tabacum(common tobacco (TN90 2014))(info)GCF_000715135.1

•Nicotiana benthamiana(eudicot N.benthamiana (KLAB 2023))(info)GCA_034376525.1

•Nicotiana attenuata(tobacco N.attenuata)(info)GCF_001879085.1

•Nicotiana tomentosiformis(tobacco N.tomentosiformis)(info)GCF_000390325.2

•Nicotiana sylvestris(wood tobacco)(info)GCF_000393655.1

Convolvulaceae

Ipomoeeae

Ipomoea

•Ipomoea nil(Japanese morning glory)(info)GCF_001879475.1

•Ipomoea batatas(sweet potato (Taizhong6 2017))(info)GCA_002525835.2

•Ipomoea triloba(trilobed morning glory)(info)GCF_003576645.1

Salvia incertae sedis

•Salvia hispanica(chia eudicots (TCC Black 2014 2022))(info)GCF_023119035.1

•Salvia miltiorrhiza(red sage (Shanhuang shh 2023))(info)GCF_028751815.1

Salvia subgen. Calosphace

core Calosphace

Salvia splendens

•Salvia splendens(S.splendens huo1 eudicots (BFU 2021))(info)GCF_004379255.1

•Salvia splendens(scarlet sage (huo1 2021))(info)GCF_004379255.2

Lamioideae

Pogostemoneae

Pogostemon

•Pogostemon cablin(patchouli (Gaoche1L2016 2018))(info)GCA_003675935.1

•Henckelia pumila(eudicot H.pumila (YLH828 2023))(info)GCF_033568475.1

Primulina

•Primulina eburnea(eudicot P.eburnea (SZY01 2022))(info)GCF_022965805.1

•Primulina huaijiensis(eudicot P.huaijiensis (GDHJ02 2020))(info)GCF_012295235.1

•Primulina tabacum(Primulina tabacum (GXHZ01 2022))(info)GCF_025594145.1

•Andrographis paniculata(green chiretta (2019))(info)GCF_009805555.1

Orobanchaceae

Orobanchaceae incertae sedis

Phtheirospermum

•Phtheirospermum japonicum(Phtheirospermum japonicum (okayama 2020))(info)GCA_014905375.1

Pedaliaceae

Sesamum

•Sesamum indicum(sesame)(info)GCF_000512975.1

Phrymaceae

Erythranthe

•Erythranthe guttata(spotted monkey flower)(info)GCF_000504015.1

Olea europaea subsp. europaea

•Olea europaea var. sylvestris(wild olive)(info)GCF_002742605.1

Bertiereae - Coffeeae clade

Coffeeae

Coffea

Coffea arabica

•Coffea arabica(coffee C.arabica (CCC135-36 2018))(info)GCF_003713225.1

•Coffea arabica(coffee C.arabica (ET-39 2024))(info)GCF_036785885.1

•Coffea eugenioides(coffee C.eugenioides (CCC68of 2018))(info)GCF_003713205.1

•Catharanthus roseus(Madagascar periwinkle (Sunstorm Apricot 2015))(info)GCA_000949345.1

•Lactuca sativa(eudicots lettuce (Salinas v7 2020))(info)GCF_002870075.2

•Lactuca sativa(lettuce (Salinas v7 2018))(info)GCF_002870075.1

•Lactuca sativa(lettuce (Salinas v8 2020))(info)GCF_002870075.3

•Lactuca sativa(garden lettuce (Salinas v11 2022))(info)GCF_002870075.4

•Lactuca sativa(lettuce eudicots (Salinas 2011))(info)GCA_000227445.1

Cynara cardunculus subsp. cardunculus

Cynara cardunculus var. scolymus

•Cynara cardunculus var. scolymus(globe artichoke (v1 2C 2018))(info)GCF_001531365.1

•Cynara cardunculus var. scolymus(globe artichoke (v1.1 2C 2018))(info)GCF_001531365.2

•Rutidosis leptorrhynchoides(button wrinklewort R.leptorrhynchoides (AG116_Rl617_1_P2 2025))(info)GCF_046630445.1

Heliantheae alliance

Heliantheae

Helianthus

•Helianthus annuus(common sunflower)(info)GCF_002127325.2

Coreopsideae

Bidens

•Bidens hawaiensis(Hawaiian beggarticks (Kalapana, Puna primary hap 2024))(info)GCF_021521415.1

•Erigeron canadensis(horseweed)(info)GCF_010389155.1

Anthemideae

Artemisiinae

Artemisia

•Artemisia annua(sweet wormwood (Huhao1# 2018))(info)GCA_003112345.1

Daucus carota subsp. sativus

•Daucus carota subsp. sativus(carrot)(info)GCF_001625215.1

•Daucus carota subsp. sativus(carrot (DH1 2023))(info)GCF_001625215.2

apioid superclade

Apieae

Apium

•Apium graveolens(celery A.graveolens (Ventura 2021))(info)GCF_009905375.1

Cornales

Cornaceae

Cornus

•Cornus florida(flowering dogwood (Cherokee Brave 2023))(info)GCF_030987335.1

•Populus trichocarpa(black cottonwood (Ptri.A.LA.226.w1 alternate hap 2023))(info)GCA_028534865.1

•Populus trichocarpa(black cottonwood (Ptri.A.LA.226.w1 primary hap 2023))(info)GCA_028534895.1

•Populus trichocarpa(black cottonwood (v3 Nisqually-1 2018))(info)GCF_000002775.4

•Populus trichocarpa(black cottonwood (v4.1 Nisqually-1 2022))(info)GCF_000002775.5

Populus euphratica

•Populus euphratica(Euphrates poplar (v1 2014))(info)GCF_000495115.1

•Populus euphratica(Euphrates poplar (v2 2014))(info)GCF_000495115.2

•Populus nigra(eudicot P.nigra (primary hap 2023))(info)GCF_951802175.1

Populus alba

•Populus alba(silver poplar)(info)GCF_005239225.1

•Populus alba(white poplar (2024))(info)GCF_005239225.2

Populus alba x Populus glandulosa

•Populus alba x Populus glandulosa(white poplar P.alba x Populus glandulosa (maternal hap 84K 2023))(info)GCA_033621325.1

•Populus alba x Populus glandulosa(white poplar P.alba x Populus glandulosa (paternal hap 84K 2023))(info)GCA_033617975.1

•Manihot esculenta(cassava (v6 AM560-2 2016 DOE))(info)GCF_001659605.1

•Manihot esculenta(cassava (60444 2018))(info)GCA_003957885.1

•Manihot esculenta(cassava (v8 AM560-2 2021 DOE))(info)GCF_001659605.2

Jatropheae

Jatropha

•Jatropha curcas(Barbados nut)(info)GCF_014843425.1

Micrandreae

Hevea

Hevea brasiliensis

•Hevea brasiliensis(rubber tree (MT/VB/25A 57/8 2023))(info)GCF_030052815.1

•Hevea brasiliensis(rubber tree (reyan7-33-97 2016))(info)GCF_001654055.1

•Mercurialis annua(annual mercury (v1 primary hap 2022))(info)GCF_937616625.1

•Mercurialis annua(annual mercury (v2 primary hap 2022))(info)GCF_937616625.2

Ricinus

Ricinus communis

•Ricinus communis(castor bean (Hale 2011 JCVI))(info)GCF_000151685.1

•Ricinus communis(castor bean (wild-type WT05 2021))(info)GCF_019578655.1

Euphorbioideae

Euphorbieae

Euphorbia

Euphorbia subgen. Esula

Euphorbia sect. Lathyris

•Euphorbia lathyris(eudicot E.lathyris (primary hap 2023))(info)GCF_963576675.1

•Juglans californica(California black walnut (Jcal.S.LA.6 alternate hap 2022))(info)GCA_023349545.1

•Juglans californica(California black walnut (Jcal.S.LA.6 primary hap 2022))(info)GCA_023349395.1

•Juglans regia(English walnut)(info)GCF_001411555.2

•Juglans microcarpa x Juglans regia(J.microcarpa x regia eudicots (UCDavis 2019))(info)GCF_004785595.1

Carya

•Carya illinoinensis(pecan)(info)GCF_018687715.1

Fagaceae

Quercus

Quercus berberidifolia

•Quercus berberidifolia(California scrub oak (Qber.S.LA.60 alternate hap 2023))(info)GCA_028535905.1

•Quercus berberidifolia(California scrub oak (Qber.S.LA.60 primary hap 2023))(info)GCA_028535815.1

Quercus wislizeni

•Quercus wislizeni(interior live oak (QUWIS_CCGP_1 alternate hap 2022))(info)GCA_023055485.1

•Quercus wislizeni(interior live oak (QUWIS_CCGP_1 primary hap 2022))(info)GCA_023055345.1

Quercus tomentella

•Quercus tomentella(island oak (RSA801373 alternate hap 2023))(info)GCA_028535165.1

•Quercus tomentella(island oak (RSA801373 primary hap 2023))(info)GCA_028535515.1

Quercus suber

•Quercus suber(cork oak (v1 HL8 2018))(info)GCF_002906115.1

•Quercus suber(cork oak (v2 HL8 2018))(info)GCF_002906115.2

•Quercus suber(cork oak (v3 HL8 2024))(info)GCF_002906115.3

Quercus lobata

•Quercus lobata(valley oak (v3.0 2019))(info)GCF_001633185.1

•Quercus lobata(valley oak (v3.2 2019))(info)GCF_001633185.2

•Quercus robur(English oak (primary hap 2022))(info)GCF_932294415.1

Castanea

•Castanea sativa(European chestnut (Marrone di Chiusa Pesio 2024))(info)GCF_040712315.1

Betulaceae

Alnus

•Alnus glutinosa(eudicot A.glutinosa (primary hap 2023))(info)GCF_958979055.1

Corylus

•Corylus avellana(European hazelnut (Tombul 2020))(info)GCF_901000735.1

Heteromeles arbutifolia

•Heteromeles arbutifolia(toyon (HeAr 88 alternate hap 2022))(info)GCA_024363235.1

•Heteromeles arbutifolia(toyon (HeAr 88 primary hap 2022))(info)GCA_024362995.1

Malus

Malus domestica

•Malus domestica(apple (Golden Delicious X9273 #13 2017 genbank))(info)GCA_002114115.1

•Malus domestica(apple (Golden Delicious X9273 #13 2017 refseq))(info)GCF_002114115.1

•Malus sylvestris(European crab apple (2022))(info)GCF_916048215.2

Pyrus

Pyrus x bretschneideri

•Pyrus x bretschneideri(Chinese white pear (Dangshansuli 2012))(info)GCF_000315295.1

•Pyrus x bretschneideri(Chinese white pear (Hongxiangsu 2021))(info)GCF_019419815.1

•Pyrus communis(pear (primary hap 2023))(info)GCF_963583255.1

Amygdaleae

Prunus

•Prunus dulcis(almond)(info)GCF_902201215.1

•Prunus mume(Japanese apricot)(info)GCF_000346735.1

•Prunus persica(peach)(info)GCF_000346465.2

•Prunus avium(sweet cherry)(info)GCF_002207925.1

Rosoideae

Rosoideae incertae sedis

Rosa

Rosa chinensis

•Rosa chinensis(China rose (Old Blush v1 2018))(info)GCF_002994745.1

•Rosa chinensis(China rose (Old Blush v2 2019))(info)GCF_002994745.2

•Rosa x damascena(damask rose (2016))(info)GCA_001662545.1

•Rosa rugosa(eudicot R.rugosa (primary hap 2023))(info)GCF_958449725.1

Fragaria vesca subsp. vesca

•Fragaria vesca subsp. vesca(wild strawberry (2011 genbank))(info)GCA_000184155.1

•Fragaria vesca subsp. vesca(wild strawberry (2011 refseq))(info)GCF_000184155.1

•Fragaria x ananassa(strawberry (Reikou 2013))(info)GCA_000511835.1

Potentilleae incertae sedis

Argentina

•Argentina anserina(silverweed cinquefoil (primary hap 2022))(info)GCF_933775445.1

Cannabaceae

Cannabis

Cannabis sativa

•Cannabis sativa(Cannabis sativa ( 2020))(info)GCA_016165845.1

•Cannabis sativa(Cannabis sativa (Cannatonic 2016))(info)GCA_001865755.1

•Cannabis sativa(Cannabis sativa (Harvard OEB 2019))(info)GCF_900626175.2

•Cannabis sativa(Cannabis sativa (Jamaican Lion DASH 2019))(info)GCA_003660325.2

•Cannabis sativa(Cannabis sativa (Jamaican Lion Mother 2020))(info)GCA_012923435.1

•Cannabis sativa(Cannabis sativa (JL 2020))(info)GCA_013030365.1

•Cannabis sativa(eudicot C.sativa (Pink pepper KNU-18-1 2023))(info)GCF_029168945.1

Humulus

Humulus lupulus

•Humulus lupulus(European hop (primary hap 2023))(info)GCF_963169125.1

•Humulus lupulus var. lupulus(European hop (Shinshu Wase 2014))(info)GCA_000831365.1

Moraceae

Ficeae

Ficus

•Ficus carica(common fig (Dottato GU2019 2019))(info)GCA_009761775.1

Moreae

Morus

•Morus notabilis(mulberry M.notabilis)(info)GCF_000414095.1

•Ziziphus jujuba(common jujube (Dongzao 2015))(info)GCF_000826755.1

•Ziziphus jujuba(common jujube (Dongzao 2023))(info)GCF_031755915.1

•Ziziphus jujuba var. spinosa(common jujube (AT0 2021))(info)GCF_020796205.1

Fabales

Fabaceae

Papilionoideae

50 kb inversion clade

NPAAA clade

indigoferoid/millettioid clade

Phaseoleae

Vigna

Vigna unguiculata

•Vigna unguiculata(cowpea (IT97K-499-35 v1 2019))(info)GCF_004118075.1

•Vigna unguiculata(cowpea (IT97K-499-35 v2 2019))(info)GCF_004118075.2

Vigna radiata

Vigna radiata var. radiata

•Vigna radiata var. radiata(mung bean (VC1973A 2015 genbank))(info)GCA_000741045.2

•Vigna radiata var. radiata(mung bean (VC1973A 2015 refseq))(info)GCF_000741045.1

Vigna angularis

•Vigna angularis(adzuki bean (Jingnong 6 2015))(info)GCF_001190045.1

•Vigna angularis(adzuki bean (LongXiaoDou No.4 2021))(info)GCF_016808095.1

•Vigna umbellata(rice bean eudicots (VRB-3 Himshakti 2021))(info)GCF_018835915.1

Cajanus

Cajanus cajan

•Cajanus cajan(pigeon pea (v1 2016 BGI))(info)GCF_000340665.1

•Cajanus cajan(pigeon pea (v2 2016 BGI))(info)GCF_000340665.2

Glycine

Glycine subgen. Soja

Glycine max

•Glycine max(soybean (US DOE JGI-PGF v2.0 2010))(info)GCF_000004515.4

•Glycine max(soybean (US DOE JGI-PGF v2.1 2018))(info)GCF_000004515.5

•Glycine max(soybean (US DOE JGI-PGF v2 2021))(info)GCF_000004515.6

•Glycine max(soybean (Williams 82 2023))(info)GCA_030864155.1

•Glycine soja(wild soybean)(info)GCF_004193775.1

Phaseolus

Phaseolus vulgaris

•Phaseolus vulgaris(common bean)(info)GCF_000499845.1

•Phaseolus vulgaris(eudicot P.vulgaris (G19833 2024))(info)GCF_000499845.2

Abreae

Abrus

•Abrus precatorius(Indian licorice)(info)GCF_003935025.1

•Medicago truncatula(barrel medic (2018))(info)GCF_003473485.1

•Medicago truncatula(barrel medic (A17 2014))(info)GCF_000219495.3

•Medicago truncatula(barrel medic (HM340 2017))(info)GCA_002024945.1

Trifolium

•Trifolium pratense(red clover eudicots (HEN17-A07 2021))(info)GCF_020283565.1

Cicereae

Cicer

Cicer arietinum

•Cicer arietinum(chickpea)(info)GCF_000331145.1

•Cicer arietinum(chickpea (CDC Frontier Library 1 2024))(info)GCF_000331145.2

Fabeae

Lathyrus

•Lathyrus oleraceus(garden pea (Zhongwan6 2022))(info)GCF_024323335.1

Vicia

•Vicia villosa(hairy vetch (HV-30 2023))(info)GCF_029867415.1

robinioid clade

Loteae

Lotus

•Lotus japonicus(birdsfoot trefoil (B-129 2022))(info)GCF_012489685.1

mirbelioid clade

Mirbelieae

Gastrolobium

•Gastrolobium bilobum(eudicot G.bilobum (WA Gb01-03AN 2023))(info)GCF_033153095.1

dalbergioids sensu lato

•Arachis duranensis(wild peanut A.duranensis (v1 V14167 2017))(info)GCF_000817695.2

•Arachis duranensis(wild peanut A.duranensis (v2 V14167 2020))(info)GCF_000817695.3

Arachis hypogaea

•Arachis hypogaea(peanut)(info)GCF_003086295.2

•Arachis hypogaea(peanut (GDAAS-fuhuasheng2018 2019))(info)GCA_004170445.1

•Arachis hypogaea(peanut (Tifrunner 2023))(info)GCF_003086295.3

•Arachis ipaensis(wild peanut A.ipaensis (K30076 2017))(info)GCF_000816755.2

•Arachis stenosperma(wild peanut A.stenosperma (V10309 2020))(info)GCF_014773155.1

Dalbergia clade

Aeschynomene

•Aeschynomene evenia(shrubby jointvetch A. evenia (CIAT22838 2020))(info)GCA_013621005.1

genistoids sensu lato

core genistoids

Genisteae

Lupinus

•Lupinus angustifolius(narrow-leaved blue lupine)(info)GCF_001865875.1

•Lupinus albus(white lupine (Amiga GWH2020 2020))(info)GCA_010261695.1

•Neltuma alba(algarrobo blanco (v1 B1F8T4 2019))(info)GCF_004799145.1

•Neltuma alba(algarrobo blanco (v2 B1F8T4 2019))(info)GCF_004799145.2

Prosopis

•Prosopis cineraria(ghaf (Desert tree PC_DT_omini 2023))(info)GCF_029017545.1

Cucurbita pepo subsp. pepo

•Cucurbita pepo subsp. pepo(vegetable marrow (v1 mu-cu-16 2017))(info)GCF_002806865.1

•Cucurbita pepo subsp. pepo(vegetable marrow (v2 mu-cu-16 2017))(info)GCF_002806865.2

•Cucurbita moschata(crookneck pumpkin)(info)GCF_002738365.1

•Cucurbita maxima(winter squash)(info)GCF_002738345.1

Momordiceae

Momordica

•Momordica charantia(bitter melon)(info)GCF_001995035.1

Benincaseae

Cucumis

•Cucumis sativus(cucumber)(info)GCF_000004075.3

Cucumis melo

•Cucumis melo(muskmelon (AY 2022))(info)GCF_025177605.1

•Cucumis melo(muskmelon (DHL92 2012))(info)GCF_000313045.1

Citrullus

•Citrullus lanatus(watermelon (97103 2019))(info)GCA_000238415.2

Benincasa

•Benincasa hispida(wax gourd)(info)GCF_009727055.1

Celastrales

Celastraceae

Tripterygium

•Tripterygium wilfordii(thunder duke vine)(info)GCF_013401445.1

•Raphanus sativus(radish (v1 WS10039 2015))(info)GCF_000801105.1

•Raphanus sativus(radish (v2 WK10039 2023))(info)GCF_000801105.2

Brassica

•Brassica rapa(field mustard (Chiifu-401-42 2020))(info)GCF_000309985.2

Brassica napus

•Brassica napus(rape (Da-Ae 2021))(info)GCF_020379485.1

•Brassica napus(rape (ZS11 2017))(info)GCF_000686985.2

Brassica oleracea

•Brassica oleracea(wild cabbage (2018))(info)GCA_900416815.2

•Brassica oleracea var. oleracea(wild cabbage)(info)GCF_000695525.1

Brassica juncea

•Brassica juncea var. tumida(zha cai (T84-66 inbred line 2016))(info)GCA_001687265.1

Camelineae

Arabidopsis

Arabidopsis thaliana

•Arabidopsis thaliana(thale cress (tair10 Columbia 2011))(info)GCF_000001735.3

•Arabidopsis thaliana(thale cress (tair10.1 Columbia 2018))(info)GCF_000001735.4

Arabidopsis lyrata

•Arabidopsis lyrata subsp. lyrata(lyrate rockcress)(info)GCF_000004255.2

Camelina

•Camelina sativa(false flax)(info)GCF_000633955.1

Capsella

•Capsella rubella(pink shepherd's-purse)(info)GCF_000375325.1

Thlaspideae

Thlaspi

•Thlaspi arvense(field pennycress (KM-2021 2021))(info)GCA_018983045.1

Eutremeae

Eutrema

•Eutrema salsugineum(saltwater cress)(info)GCF_000478725.1

Cardamineae

Barbarea

•Barbarea vulgaris(winter cress (G-type 2016))(info)GCA_001920985.1

Caricaceae

Carica

•Carica papaya(papaya)(info)GCF_000150535.2

Cleomaceae

New World clade

Tarenaya

•Tarenaya hassleriana(spider flower)(info)GCF_000463585.1

•Syzygium oleosum(blue lilly pilly tree (NSW1041296 2022))(info)GCF_021117445.2

•Syzygium oleosum(scented satinash)(info)GCF_900635055.1

Eucalypteae

Eucalyptus

Eucalyptus grandis

•Eucalyptus grandis(rose gum (2021))(info)GCF_016545825.1

•Eucalyptus grandis(rose gum (BRASUZ1 2014))(info)GCF_000612305.1

•Rhodamnia argentea(silver malletwood (14919 2019))(info)GCF_900635035.1

•Rhodamnia argentea(silver malletwood (NSW1041297 2021))(info)GCF_020921035.1

Lythraceae

Punica

•Punica granatum(pomegranate)(info)GCF_007655135.1

Trapa

•Trapa natans(water chestnut (Nanhuling F231 2024))(info)GCA_035582545.1

•Theobroma cacao(cacao)(info)GCF_000208745.1

Herrania

•Herrania umbratica(wild Colombian cocoa)(info)GCF_002168275.1

Malvoideae

Gossypium

Gossypium hirsutum

•Gossypium hirsutum(cotton G.hirsutum (BGI 2015))(info)GCF_000987745.1

•Gossypium hirsutum(cotton G.hirsutum (HudsonAlpha 2021))(info)GCF_007990345.1

Gossypium raimondii

•Gossypium raimondii(cotton G.raimondii)(info)GCF_000327365.1

•Gossypium raimondii(Peruvian cotton (G.raimondii 2012 DOE))(info)GCF_000327365.2

•Gossypium raimondii(Peruvian cotton (GPD5lz 2022))(info)GCF_025698545.1

Gossypium arboreum

•Gossypium arboreum(tree cotton (Shixiya-1 2022))(info)GCF_025698485.1

•Gossypium arboreum(tree cotton (Shixiya1 2015 BGI))(info)GCF_000612285.1

Abelmoschus

•Abelmoschus esculentus(emerald green okra A.esculentus (Green Star 2024))(info)GCA_035048815.1

Hibiscus

•Hibiscus syriacus(rose of Sharon)(info)GCF_006381635.1

Helicteroideae

Durio

•Durio zibethinus(durian)(info)GCF_002303985.1

•Citrus x clementina(clementine)(info)GCF_000493195.1

•Citrus x limon(lemon (UCLL1 2023))(info)GCA_034663555.1

Citrus sinensis

•Citrus sinensis(sweet orange)(info)GCF_000317415.1

•Citrus sinensis(Valencia sweet orange 2022)(info)GCF_022201045.2

Anacardiaceae

Mangifera

•Mangifera indica(mango)(info)GCF_011075055.1

Pistacia

•Pistacia vera(pistachio)(info)GCF_008641045.1

rosids incertae sedis

•Vitis riparia x Vitis rupestris(eudicot V.riparia x Vitis rupestris (2022))(info)GCA_946000675.1

•Vitis riparia(riverbank grape)(info)GCF_004353265.1

Vitis vinifera

•Vitis vinifera(wine grape (Chardonnay FPS 04 2020))(info)GCA_011037095.1

•Vitis vinifera(wine grape (Chkhaveri 2017))(info)GCA_002922885.1

•Vitis vinifera(wine grape (Pinot Noir 40024 2023))(info)GCF_030704535.1

•Vitis vinifera(wine grape (PN40024 2009))(info)GCF_000003745.3

Beta vulgaris subsp. vulgaris

•Beta vulgaris subsp. vulgaris(beet (2015))(info)GCF_000511025.2

•Beta vulgaris subsp. vulgaris(beet (v1 EL10 2021 USDA))(info)GCF_002917755.1

•Beta vulgaris subsp. vulgaris(beet (v2 EL10 2022 USDA))(info)GCF_026745355.1

Chenopodioideae

Atripliceae

Chenopodium

•Chenopodium quinoa(quinoa)(info)GCF_001683475.1

Anserineae

Spinacia

Spinacia oleracea

•Spinacia oleracea(spinach (Sp75 2017))(info)GCF_002007265.1

•Spinacia oleracea(spinach (Varoflay 2021))(info)GCF_020520425.1

Amaranthaceae

Amaranthus

•Amaranthus cruentus(eudicot A.cruentus (Arusha 2021))(info)GCA_019425755.1

•Amaranthus tricolor(Joseph's coat eudicots (Red AtriRed21 2022))(info)GCF_026212465.1

•Fagopyrum tataricum(Tartarian buckwheat (Pinku1 2017))(info)GCA_002319775.1

Caryophyllaceae

Sileneae

Silene

Silene subgen. Behenantha

Silene sect. Melandrium

•Silene latifolia(white cockle S.latifolia (original U9 population 2025))(info)GCF_048544455.1

Santalales

Viscaceae

Viscum

•Viscum album(European mistletoe (primary hap 2023))(info)GCA_963277665.1

Ximeniaceae

Malania

•Malania oleifera(garlic-fruit tree (guangnan 2023))(info)GCF_029873635.1

•Aquilegia eximia(Van Houtte's columbine (alt pseudohaplotype PFEx6 2022))(info)GCA_023053535.1

•Aquilegia eximia(Van Houtte's columbine (PFEx6 2022))(info)GCA_023053565.1

Papaveraceae

Papaveroideae

Papaver

•Papaver somniferum(opium poppy)(info)GCF_003573695.1

Hordeum vulgare subsp. vulgare

•Hordeum vulgare subsp. vulgare(domesticated barley (H.vulgare 2021 genbank))(info)GCA_904849725.1

•Hordeum vulgare subsp. vulgare(domesticated barley (H.vulgare 2021 refseq))(info)GCF_904849725.1

Triticinae

Triticum

Triticum dicoccoides

•Triticum dicoccoides(wild emmer wheat (Zavitan Atlit2015 v2.0 2019))(info)GCF_002162155.1

•Triticum dicoccoides(wild emmer wheat (Zavitan Atlit2015 v2.1 2019))(info)GCF_002162155.2

Triticum aestivum

•Triticum aestivum(bread wheat (Chinese Spring 2020))(info)GCA_002220415.3

•Triticum aestivum(bread wheat (Chinese Spring 2021, UC Davis))(info)GCF_018294505.1

•Triticum aestivum(bread wheat (Chinese Spring IWGSC RefSeq v1.0 2018))(info)GCA_900519105.1

•Triticum aestivum(bread wheat (Fielder 2021))(info)GCA_907166925.1

•Triticum aestivum(bread wheat (Kariega 2021))(info)GCA_910594105.1

Triticum turgidum

•Triticum turgidum subsp. durum(durum wheat (2019))(info)GCA_900231445.1

•Triticum urartu(red wild einkorn wheat (G1812 2018))(info)GCF_003073215.2

Aegilops

Aegilops tauschii

Aegilops tauschii subsp. strangulata

•Aegilops tauschii subsp. strangulata(goatgrass A.strangulata)(info)GCF_002575655.1

•Aegilops tauschii subsp. strangulata(goatgrass A.tauschii.strangulata (AL8/78 2024))(info)GCF_002575655.3

•Aegilops tauschii subsp. strangulata(monocots)(info)GCF_002575655.2

•Aegilops tauschii subsp. tauschii(goatgrass A.tauschii)(info)GCF_001957025.1

Poodae

Poeae

Poeae Chloroplast Group 2

Loliodinae

Loliinae

Lolium

•Lolium rigidum(annual ryegrass (FL_2022 2022))(info)GCF_022539505.1

Lolium perenne

•Lolium perenne(perennial ryegrass (Kyuss_39 2021))(info)GCF_019359855.1

•Lolium perenne(perennial ryegrass (Kyuss_39 2024))(info)GCF_019359855.2

{1652081}

•Poeae type

Stipodae

Brachypodieae

Brachypodium

•Brachypodium distachyon(stiff brome)(info)GCF_000005505.3

•Oryza brachyantha(malo sina (v1 2012))(info)GCF_000231095.1

•Oryza brachyantha(malo sina (v2 2021))(info)GCF_000231095.2

•Oryza glaberrima(African rice (2021))(info)GCF_000147395.1

Oryza sativa

•Oryza sativa(Asian cultivated rice (Carolina Gold Select 2019))(info)GCA_004007595.1

Oryza sativa Japonica Group

•Oryza sativa Japonica Group(Japanese rice (2023))(info)GCF_034140825.1

•Oryza sativa Japonica Group(Japanese rice (Kitaake 2020))(info)GCA_009797565.1

•Oryza sativa Japonica Group(Japanese rice (Nipponbare 2015))(info)GCF_001433935.1

•Oryza sativa Indica Group(long-grained rice (Zhenshan 97 2020))(info)GCA_001623345.3

•Phragmites australis(common reed (primary hap 2023))(info)GCF_958298935.1

•Cenchrus purpureus(elephant grass (2022))(info)GCA_022644695.1

•Cenchrus americanus(pearl millet (Tift 23D2B1-P1-P5 2018))(info)GCA_002174835.2

Setaria

•Setaria italica(foxtail millet)(info)GCF_000263155.2

Setaria viridis

•Setaria viridis(green foxtail)(info)GCF_005286985.1

•Setaria viridis(green foxtail (2024))(info)GCF_005286985.2

•Setaria viridis(green foxtail (ME034v 2020))(info)GCA_012934335.1

Panicinae

Panicum

Panicum sect. Panicum

•Panicum hallii(Hall's panicgrass)(info)GCF_002211085.1

Panicum sect. Hiantes

•Panicum virgatum(switchgrass)(info)GCF_016808335.1

Anthephorinae

Digitaria

•Digitaria exilis(white fonio (2020))(info)GCA_902806635.1

•Zea mays(maize)(info)GCF_902167145.1

•Zea mays(maize (2020))(info)GCA_905067065.1

•Zea mays(maize (B104 2021))(info)GCA_910593975.1

•Zea mays(maize (B73 2017))(info)GCA_000005005.6

•Zea mays(maize (OH43 2020))(info)GCA_902167015.1

Saccharinae

Miscanthus

•Miscanthus floridulus(Pacific Island silvergrass (M001 2021))(info)GCF_019320115.1

Saccharum

Saccharum officinarum species complex

unclassified Saccharum officinarum complex

•Saccharum hybrid cultivar(sugarcane (2018))(info)GCA_900465005.1

•Saccharum spontaneum(wild sugarcane (AP85-441 2018))(info)GCA_003544955.1

Sorghinae

Sorghum

Sorghum bicolor

•Sorghum bicolor(sorghum (BTx623 2017))(info)GCF_000003195.3

•Sorghum bicolor(sorghum (Tx430 2018))(info)GCA_003482435.1

•Eleusine coracana subsp. coracana(finger millet (ML-365 2017))(info)GCA_002180455.1

Zoysieae

Zoysiinae

Zoysia

•Zoysia japonica(Korean lawngrass (Nagirizaki 2016))(info)GCA_001602275.1

Eragrostideae

Eragrostidinae

Eragrostis

•Eragrostis curvula(weeping love grass (Victoria 2019))(info)GCA_007726485.1

Typhaceae

Typha

•Typha latifolia(common cattail (L0001 2021))(info)GCF_019914945.1

•Typha angustifolia(narrow-leaf cattail (Huaian 2025))(info)GCF_048772165.1

Bromeliaceae

Bromelioideae

Ananas

•Ananas comosus(pineapple)(info)GCF_001540865.1

•Elaeis guineensis(African oil palm)(info)GCF_000442705.1

•Elaeis guineensis(African oil palm (ETL-2024a 2024))(info)GCF_000442705.2

•Phoenix dactylifera(date palm (Barhee BC4 2019))(info)GCF_009389715.1

•Phoenix dactylifera(date palm (Khalas 2013))(info)GCF_000413155.1

Zingiberales

Zingiberaceae

Boesenbergia

•Boesenbergia rotunda(Chinese keys (BR_CEBAR01 2022))(info)GCA_024364735.1

Zingiber

•Zingiber officinale(ginger)(info)GCF_018446385.1

Curcuma

•Curcuma longa(turmeric (G26 2024))(info)GCF_044706935.1

Musaceae

Musa

Musa acuminata

•Musa acuminata AAA Group(dessert banana (baxijiao 2024))(info)GCF_036884655.1

•Musa acuminata subsp. malaccensis(wild Malaysian banana)(info)GCF_000313855.2

•Dendrobium officinale(Chinese medicinal orchid (niu2020 2021))(info)GCA_019514585.1

•Dendrobium chrysotoxum(fried-egg orchid (Lindl 2021))(info)GCA_019925795.1

•Dendrobium catenatum(orchid D.catenatum)(info)GCF_001605985.2

Vandeae

Aeridinae

Phalaenopsis

•Phalaenopsis equestris(orchid P.equestris)(info)GCF_001263595.1

•Vanilla planifolia(cultivated vanilla (Daphna alternate hap 2020))(info)GCA_016413885.1

•Vanilla planifolia(cultivated vanilla (Daphna primary hap 2020))(info)GCA_016413895.1

Asparagaceae

Asparagoideae

Asparagus

•Asparagus officinalis(garden asparagus (2017))(info)GCF_001876935.1

Dioscorea cayenensis subsp. rotundata

•Dioscorea cayenensis subsp. rotundata(Guinea yam (TDr96_F1 2017))(info)GCA_002240015.2

•Dioscorea cayenensis subsp. rotundata(white yam)(info)GCF_009730915.1

•Spirodela polyrhiza(great duckweed (9509 2017))(info)GCA_001981405.1

Proteales

Proteaceae

Macadamia

•Macadamia integrifolia(macadamia nut)(info)GCF_013358625.1

Telopea

•Telopea speciosissima(New South Wales waratah (Mountain lineage 2021))(info)GCF_018873765.1

Nelumbonaceae

Nelumbo

•Nelumbo nucifera(sacred lotus)(info)GCF_000365185.1