GenArk taxonomy - Mammals

View list of species as table for Mammals

696 accessions

Mammalia

Theria

•Orycteropus afer afer(aardvark (SDZICR_OR568_19922 2012 Broad))(info)GCF_000298275.1

•Loxodonta africana(African savanna elephant (2009 refseq))(info)GCF_000001905.1

•Loxodonta africana(African savanna elephant (hap1 mLoxAfr1 2023))(info)GCA_030020305.1

•Loxodonta africana(African savanna elephant (hap2 2023 genbank))(info)GCA_030014295.1

•Loxodonta africana(African savanna elephant (hap2 2023 refseq))(info)GCF_030014295.1

Elephas

Elephas maximus

Elephas maximus indicus

•Elephas maximus indicus(Asiatic elephant (mEleMax1 alternate hap 2022))(info)GCA_024166345.1

•Elephas maximus indicus(Asiatic elephant (mEleMax1 primary hap 2022))(info)GCF_024166365.1

•Trichechus inunguis(Amazon manatee (hap1 2025))(info)GCA_046562985.1

•Trichechus inunguis(Amazon manatee (hap2 2025))(info)GCA_046562895.1

Trichechus manatus

Trichechus manatus latirostris

•Trichechus manatus latirostris(Florida manatee (CSIC 2023))(info)GCA_030013775.1

•Trichechus manatus latirostris(Florida manatee (Lorelei 2012 refseq))(info)GCF_000243295.1

Dugongidae

Dugong

Dugong dugon

•Dugong dugon(dugong (hap1 mDugDug1 2023))(info)GCA_030035585.1

•Dugong dugon(dugong (hap2 mDugDug1 2023))(info)GCA_030020955.1

•Rhynchocyon petersi(black and rufous elephant shrew (mRhyPet1hap1 2024))(info)GCA_043290085.1

•Rhynchocyon petersi(black and rufous elephant shrew (mRhyPet1hap2 2024))(info)GCA_043290065.1

Elephantulus

•Elephantulus edwardii(Cape elephant shrew)(info)GCF_000299155.1

•Chrysochloris asiatica(Cape golden mole (2012 Broad))(info)GCF_000296735.1

Tenrecidae

Tenrecinae

Echinops

•Echinops telfairi(small Madagascar hedgehog)(info)GCF_000313985.2

Tenrec

•Tenrec ecaudatus(tailess tenrec (hap1 2025))(info)GCF_050624435.1

Oryzorictinae

Nesogale

•Nesogale talazaci(Talazac's shrew tenrec)(info)GCA_004026705.1

•Procavia capensis(Cape rock hyrax (Dallas Zoo Isis #01D731 2014))(info)GCA_000152225.2

•Procavia capensis(Cape rock hyrax (US060 2019 Broad))(info)GCA_004026925.1

Heterohyrax

Heterohyrax brucei

•Heterohyrax brucei(yellow-spotted hyrax)(info)GCA_004026845.1

•Heterohyrax brucei(yellow-spotted hyrax (mHetBru1 2023))(info)GCA_028571685.1

•Heterohyrax brucei(yellow-spotted hyrax (mHetBru1 alternate hap 2023))(info)GCA_028571665.1

Arvicanthis niloticus

•Arvicanthis niloticus(African grass rat (maternal 2020))(info)GCA_011750645.1

•Arvicanthis niloticus(African grass rat (paternal 2020))(info)GCA_011762545.1

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 refseq))(info)GCF_011762505.1

•Arvicanthis niloticus(African grass rat (v2 paternal X 2024 genbank))(info)GCA_011762505.2

•Arvicanthis niloticus(African grass rat (v2 paternal X 2025 refseq))(info)GCF_011762505.2

•Arvicanthis niloticus(African grass rat (v3 paternal hap 2024))(info)GCA_011762505.3

Rattus

•Rattus rattus(black rat)(info)GCF_011064425.1

Rattus norvegicus

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 genbank))(info)GCA_036323735.1

•Rattus norvegicus(Norway rat (BN/NHsdMcwi 2024 refseq))(info)GCF_036323735.1

•Rattus norvegicus(Norway rat (F344/Stm 2024))(info)GCA_041222355.1

•Rattus norvegicus(Norway rat BN7 haplotype)(info)GCA_015244455.1

•Rattus norvegicus(Norway rat BN7.2)(info)GCF_015227675.2

•Rattus norvegicus(Norway rat celera)(info)GCF_000002265.2

•Rattus norvegicus(Norway rat Rnor6.0)(info)GCF_000001895.5

•Rattus norvegicus(Norway rat SHR/Utx RGD_8142385 2022)(info)GCA_023515785.1

•Rattus norvegicus(Norway rat SHRSP/BppUtx 2022)(info)GCA_021556685.1

•Rattus norvegicus(Norway rat WKY/Bbb 2022)(info)GCA_023515805.1

Mus

Mus musculus

•Mus musculus(house mouse (129S1_SvImJv1 2016))(info)GCA_001624185.1

•Mus musculus(house mouse (129S1_SvImJ_v3 2022))(info)GCA_921998555.2

•Mus musculus(house mouse (AKR_J v3 2022))(info)GCA_922000895.2

•Mus musculus(house mouse (alternate hap 2023))(info)GCA_949316305.1

•Mus musculus(house mouse (A_J v3 2022))(info)GCA_921998355.2

•Mus musculus(house mouse (BALB_cJ v3 2022))(info)GCA_921997145.2

•Mus musculus(house mouse (C3H_HeJ v3 2022))(info)GCA_921997125.2

•Mus musculus(house mouse (C57BL_6J T2T 2024))(info)GCA_964188535.1

•Mus musculus(house mouse (CBA_J v3 2022))(info)GCA_921998905.2

•Mus musculus(house mouse (DBA_2J v3 2022))(info)GCA_921998315.2

•Mus musculus(house mouse (FVB_NJ v3 2022))(info)GCA_921998635.2

•Mus musculus(house mouse (LP_J v3 2022))(info)GCA_947599735.1

•Mus musculus(house mouse (NOD_ShiLtJ v3 2022))(info)GCA_921998325.2

•Mus musculus(house mouse (NZO_HlLtJ v3 2022))(info)GCA_947593165.1

•Mus musculus(house mouse (primary hap 2023))(info)GCA_949316315.1

•Mus musculus(house mouse C57BL/6J 2020 GRC)(info)GCF_000001635.27

•Mus musculus(house mouse C57BL_6NJ (2016))(info)GCA_001632555.1

•Mus musculus(house mouse C57BL_6NJ (2022))(info)GCA_921999865.2

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v2 2022))(info)GCA_921998335.2

•Mus musculus molossinus(Japanese wild mouse (2022))(info)GCA_921999095.2

Mus musculus castaneus

•Mus musculus castaneus(Southeastern Asian house mouse (2016))(info)GCA_001624445.1

•Mus musculus castaneus(Southeastern Asian house mouse (2022))(info)GCA_921999005.2

•Mus musculus castaneus(Southeastern Asian house mouse (T2T 2024))(info)GCA_964188545.1

•Mus musculus domesticus(western European house mouse (WSB_EiJ v3 2022))(info)GCA_921998345.2

•Mus caroli(Ryukyu mouse (v2 2017))(info)GCF_900094665.2

•Mus spicilegus(steppe mouse (ZRU 2018))(info)GCA_003336285.1

•Mus spretus(western wild mouse (SPRET_EiJ v3 2022))(info)GCA_921997135.2

Coelomys

•Mus pahari(shrew mouse)(info)GCF_900095145.1

Apodemus

•Apodemus agrarius(Eurasian field mouse (2024))(info)GCA_964023405.1

Sylvaemus group

Apodemus sylvaticus

•Apodemus sylvaticus(European woodmouse (2022 refseq))(info)GCF_947179515.1

•Apodemus sylvaticus(European woodmouse (alternate hap 2022))(info)GCA_947179525.1

•Apodemus speciosus(large Japanese field mouse (IB14-021 2017))(info)GCA_002335545.1

Micromys

•Micromys minutus(European harvest mouse (primary hap 2024))(info)GCA_963924665.1

Mastomys

•Mastomys coucha(southern multimammate mouse)(info)GCF_008632895.1

Grammomys

•Grammomys surdaster(woodland thicket rat)(info)GCF_004785775.1

Deomyinae

Acomys

•Acomys minous(Crete spiny mouse (2024))(info)GCA_964271855.1

•Acomys dimidiatus(eastern spiny mouse (2021))(info)GCA_907164435.1

•Acomys cahirinus(Egyptian spiny mouse (US019 2019))(info)GCA_004027535.1

•Acomys russatus(golden spiny mouse (2020))(info)GCF_903995435.1

Gerbillinae

Psammomys

Psammomys obesus

•Psammomys obesus(fat sand rat (mPsaObe1 2021))(info)GCF_907164565.1

•Psammomys obesus(fat sand rat (Psa_ob012049795 2017))(info)GCA_002215935.1

Meriones

Meriones unguiculatus

•Meriones unguiculatus(Mongolian gerbil (243 2017 Lucigen Corp.))(info)GCF_002204375.1

•Meriones unguiculatus(Mongolian gerbil (EAM2014 2019 BGI))(info)GCA_008131255.1

•Meriones unguiculatus(Mongolian gerbil (TT.TT164.6M 2023))(info)GCF_030254825.1

Cricetidae

Arvicolinae

Myodes

•Myodes glareolus(bank vole)(info)GCF_902806735.1

Microtus

Microtus californicus

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 alternate hap 2023))(info)GCA_028537755.1

•Microtus californicus(California vole (kernensis MVZ Mamm 240107 primary hap 2023))(info)GCA_028537955.1

•Microtus oregoni(creeping vole)(info)GCF_018167655.1

Microtus pennsylvanicus

•Microtus pennsylvanicus(meadow vole (hap1 2024 genbank))(info)GCA_037038515.1

•Microtus pennsylvanicus(meadow vole (hap1 2024 refseq))(info)GCF_037038515.1

•Microtus pennsylvanicus(meadow vole (hap2 2024))(info)GCA_037039175.1

•Microtus ochrogaster(prairie vole)(info)GCF_000317375.1

Arvicola

Arvicola amphibius

•Arvicola amphibius(Eurasian water vole (alternate hap 2020))(info)GCA_903992525.1

•Arvicola amphibius(Eurasian water vole (v2 2021))(info)GCF_903992535.2

Chionomys

Chionomys nivalis

•Chionomys nivalis(European snow vole (alternate hap 2023))(info)GCA_950005115.1

•Chionomys nivalis(European snow vole (primary hap 2023 refseq))(info)GCF_950005125.1

Ondatra

•Ondatra zibethicus(muskrat)(info)GCA_004026605.1

Ellobius

•Ellobius talpinus(northern mole vole)(info)GCA_001685095.1

Alexandromys

•Alexandromys fortis(reed vole (MF-2015 2020))(info)GCF_014885135.2

Neotominae

Peromyscus

•Peromyscus eremicus(cactus mouse (2023))(info)GCF_949786415.1

Peromyscus californicus

•Peromyscus californicus insignis(California mouse (IS 2022))(info)GCF_007827085.1

Peromyscus maniculatus

Peromyscus maniculatus sonoriensis

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 alternate hap 2022))(info)GCA_026167925.1

•Peromyscus maniculatus sonoriensis(North American deer mouse (MVZ:Mamm:240117 primary hap 2022))(info)GCA_026229955.1

Peromyscus maniculatus bairdii

•Peromyscus maniculatus bairdii(prairie deer mouse (Baylor 2013))(info)GCF_000500345.1

•Peromyscus maniculatus bairdii(prairie deer mouse (Harvard 2020))(info)GCF_003704035.1

•Peromyscus leucopus(white-footed mouse (LL stock 2020))(info)GCF_004664715.2

Onychomys

•Onychomys torridus(southern grasshopper mouse (2020))(info)GCF_903995425.1

Cricetinae

Cricetulus

Cricetulus griseus

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2020))(info)GCF_003668045.3

•Cricetulus griseus(Chinese hamster (CHO v1 2011 BGI))(info)GCF_000223135.1

•Cricetulus griseus(Chinese hamster (CHO v2 2017 Eagle Genomics Ltd))(info)GCA_900186095.1

•Cricetulus griseus(Chinese hamster (CHO-K1 CHOZN v2.4 2022))(info)GCA_026545065.1

Phodopus

•Phodopus roborovskii(desert hamster (2022))(info)GCF_943737965.1

•Phodopus sungorus(Siberian hamster (SSSS 2022))(info)GCA_023856395.1

Mesocricetus

Mesocricetus auratus

•Mesocricetus auratus(golden hamster (Baylor 2021))(info)GCF_017639785.1

•Mesocricetus auratus(golden hamster (Broad 2013 refseq))(info)GCF_000349665.1

Sigmodontinae

Sigmodon

•Sigmodon hispidus(hispid cotton rat)(info)GCA_004025045.1

Bramus

•Bramus lutescens(Transcaucasian mole vole)(info)GCA_001685075.1

Nesomyidae

Cricetomyinae

Cricetomys

•Cricetomys gambianus(Gambian giant pouched rat)(info)GCA_004027575.1

Spalacidae

Spalacinae

Nannospalax

•Nannospalax galili(Upper Galilee mountains blind mole rat (2095 2014 refseq))(info)GCF_000622305.1

•Orientallactaga bullata(Gobi jerboa)(info)GCA_004027895.1

Dipodinae

Jaculus

Jaculus jaculus

•Jaculus jaculus(lesser Egyptian jerboa (2021))(info)GCF_020740685.1

•Jaculus jaculus(lesser Egyptian jerboa (alternate hap 2021))(info)GCA_020740715.1

•Jaculus jaculus(lesser Egyptian jerboa (JJ0015 2012 refseq))(info)GCF_000280705.1

Zapodinae

Zapus

•Zapus hudsonius(meadow jumping mouse)(info)GCA_004024765.1

•Marmota marmota marmota(Alpine marmot (2019))(info)GCF_001458135.2

•Marmota vancouverensis(Vancouver Island marmot (RANI-1049 2019))(info)GCA_005458795.1

•Marmota monax(woodchuck (v1.1 L192 2022))(info)GCF_021218885.2

Marmota flaviventris

•Marmota flaviventris(yellow-bellied marmot (hap1 2025 refseq))(info)GCF_047511675.1

•Marmota flaviventris(yellow-bellied marmot (hap2 2025))(info)GCA_047512175.1

•Marmota flaviventris(yellow-bellied marmot (SJ_83 v2.1 2019))(info)GCF_003676075.3

Urocitellus

Urocitellus parryii

•Urocitellus parryii(Arctic ground squirrel (AGS 11-09-20 2018))(info)GCF_003426925.1

•Urocitellus parryii(Arctic ground squirrel (hap1 2024))(info)GCA_045843805.1

•Urocitellus parryii(Arctic ground squirrel (hap2 2024))(info)GCA_045843765.1

Spermophilus

•Spermophilus dauricus(Daurian ground squirrel)(info)GCA_002406435.1

•Spermophilus citellus(European suslik (primary hap 2024))(info)GCA_964194105.1

Callospermophilus

Callospermophilus lateralis

•Callospermophilus lateralis(golden-mantled ground squirrel (hap1 2025))(info)GCA_048772815.1

•Callospermophilus lateralis(golden-mantled ground squirrel (hap2 2025 genbank))(info)GCA_048772825.1

•Callospermophilus lateralis(golden-mantled ground squirrel (hap2 2025 refseq))(info)GCF_048772825.1

Ictidomys

•Ictidomys tridecemlineatus(thirteen-lined ground squirrel (2021 HiC))(info)GCF_016881025.1

Xerini

Xerus

•Xerus inauris(South African ground squirrel)(info)GCA_004024805.1

•Sciurus vulgaris(Eurasian red squirrel (alternate hap 2019))(info)GCA_902685485.1

•Sciurus vulgaris(Eurasian red squirrel (v1.2 2020))(info)GCA_902686455.2

Sciurus carolinensis

•Sciurus carolinensis(gray squirrel (2020))(info)GCF_902686445.1

•Sciurus carolinensis(gray squirrel (alternate hap 2019))(info)GCA_902685475.1

Gliridae

Glirinae

Glis

•Glis glis(fat dormouse (US078 2019))(info)GCA_004027185.1

Muscardinus

Muscardinus avellanarius

•Muscardinus avellanarius(hazel dormouse)(info)GCA_004027005.1

•Muscardinus avellanarius(hazel dormouse (alternate hap 2023))(info)GCA_963383665.1

•Muscardinus avellanarius(hazel dormouse (primary hap 2023))(info)GCA_963383645.1

Graphiurinae

Graphiurus

•Graphiurus murinus(woodland dormouse)(info)GCA_004027655.1

Aplodontiidae

Aplodontia

•Aplodontia rufa(mountain beaver)(info)GCA_004027875.1

•Castor canadensis(American beaver (hap1 2025))(info)GCA_047511655.1

•Castor canadensis(American beaver (hap2 2025))(info)GCA_047511605.1

•Castor canadensis(American beaver (mCasCan1.hap1v2 2025))(info)GCF_047511655.1

•Castor canadensis(American beaver (Ward 2017 refseq))(info)GCF_001984765.1

Heteromyidae

Dipodomyinae

Dipodomys

•Dipodomys spectabilis(banner-tailed kangaroo rat)(info)GCF_019054845.1

Dipodomys merriami

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 alternate hap 2022))(info)GCA_024711525.1

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022))(info)GCA_024711535.1

•Dipodomys merriami(Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022))(info)GCF_024711535.1

•Dipodomys ordii(Ord's kangaroo rat)(info)GCF_000151885.1

•Dipodomys stephensi(Stephens's kangaroo rat)(info)GCA_004024685.1

Perognathinae

Perognathus

Perognathus longimembris

•Perognathus longimembris(little pocket mouse (longimembris alternate hap 2022))(info)GCA_024363435.1

•Perognathus longimembris(little pocket mouse (longimembris primary hap 2022))(info)GCA_024363575.1

Perognathus longimembris pacificus

•Perognathus longimembris pacificus(Pacific pocket mouse (BS65 2019 Broad))(info)GCA_004363475.1

•Perognathus longimembris pacificus(Pacific pocket mouse (PPM17 2022 San Diego Zoo))(info)GCF_023159225.1

Geomyidae

Thomomys

Thomomys bottae

•Thomomys bottae(Botta's pocket gopher (bottae MVZ:Mamm:240275 alternate hap 2022))(info)GCA_024803775.1

•Thomomys bottae(Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022))(info)GCA_024803745.1

•Thomomys bottae(Botta's pocket gopher (hap1 2023))(info)GCA_031878675.1

•Thomomys bottae(Botta's pocket gopher (hap2 2023))(info)GCA_031878665.1

Hystricomorpha

Caviidae

Cavia

•Cavia aperea(Brazilian guinea pig)(info)GCA_000688575.1

Cavia porcellus

•Cavia porcellus(domestic guinea pig (051 PalLab524CR 2023))(info)GCF_034190915.1

•Cavia porcellus(domestic guinea pig (2N 2008 refseq))(info)GCF_000151735.1

•Cavia tschudii(Montane guinea pig)(info)GCA_004027695.1

Dolichotis

•Dolichotis patagonum(Patagonian cavy)(info)GCA_004027295.1

Hydrochaeridae

Hydrochoerus

•Hydrochoerus hydrochaeris(capybara)(info)GCA_004027455.1

Hystricidae

Hystrix

•Hystrix cristata(crested porcupine)(info)GCA_004026905.1

Bathyergidae

Fukomys

Fukomys damarensis

•Fukomys damarensis(Damara mole-rat DMR 1.0 (2014 BGI))(info)GCF_000743615.1

•Fukomys damarensis(Damara mole-rat DMR 1.0 HiC (2020 DNA Zoo))(info)GCF_012274545.1

Heterocephalus

Heterocephalus glaber

•Heterocephalus glaber(naked mole-rat (2022))(info)GCA_944319725.1

•Heterocephalus glaber(naked mole-rat (MEF-2018 2020))(info)GCA_014060925.1

•Heterocephalus glaber(naked mole-rat (NMR 29 2012 refseq))(info)GCF_000247695.1

Petromuridae

Petromus

•Petromus typicus(dassie-rat)(info)GCA_004026965.1

Octodontidae

Octodon

•Octodon degus(degu (3935 2012 refseq))(info)GCF_000260255.1

Capromyidae

Capromys

•Capromys pilorides(Desmarest's hutia)(info)GCA_004027915.1

Thryonomyidae

Thryonomys

•Thryonomys swinderianus(Greater cane rat)(info)GCA_004025085.1

Chinchillidae

Chinchilla

•Chinchilla lanigera(long-tailed chinchilla)(info)GCF_000276665.1

Cuniculidae

Cuniculus

•Cuniculus paca(Lowland paca)(info)GCA_004365215.1

Erethizontidae

Erethizon

Erethizon dorsatum

•Erethizon dorsatum(North American porcupine (mEreDor1 alternate hap 2023))(info)GCA_028500835.1

•Erethizon dorsatum(North American porcupine (mEreDor1 primary hap 2023))(info)GCA_028451465.1

Ctenodactylidae

Ctenodactylus

Ctenodactylus gundi

•Ctenodactylus gundi(northern gundi (hap1 2025))(info)GCA_048771875.1

•Ctenodactylus gundi(northern gundi (hap2 2025))(info)GCA_048771865.1

•Ctenodactylus gundi(northern gundi (US049 2019))(info)GCA_004027205.1

Myocastoridae

Myocastor

•Myocastor coypus(nutria)(info)GCA_004027025.1

Dinomyidae

Dinomys

•Dinomys branickii(pacarana)(info)GCA_004027595.1

Dasyproctidae

Dasyprocta

•Dasyprocta punctata(punctate agouti)(info)GCA_004363535.1

Ctenomyidae

Ctenomys

•Ctenomys sociabilis(social tuco-tuco)(info)GCA_004027165.1

•Ochotona princeps(American pika (hap1 2023))(info)GCF_030435755.1

•Ochotona princeps(American pika (hap2 2023))(info)GCA_030435715.1

•Ochotona princeps(American pika 3.0 (2012 Broad refseq))(info)GCF_000292845.1

•Ochotona princeps(American pika 4.0 (UAM:Mamm:113957 2020))(info)GCF_014633375.1

•Ochotona curzoniae(black-lipped pika)(info)GCF_017591425.1

Leporidae

Sylvilagus

•Sylvilagus floridanus(eastern cottontail (primary hap 2023))(info)GCA_949820135.1

Lepus

•Lepus europaeus(European hare (LE1 primary hap 2023))(info)GCF_033115175.1

•Lepus americanus(snowshoe hare)(info)GCA_004026855.1

•Lepus oiostolus(woolly hare (The Qinghai-Tibet Plateau SH-2023 2024))(info)GCA_036325905.1

Oryctolagus

Oryctolagus cuniculus

•Oryctolagus cuniculus(rabbit (New Zealand White DNA-2018 2021 refseq))(info)GCF_009806435.1

•Oryctolagus cuniculus(rabbit (primary hap 2024 refseq))(info)GCF_964237555.1

•Oryctolagus cuniculus(rabbit (Thorbecke 2009 Broad refseq))(info)GCF_000003625.3

•Oryctolagus cuniculus cuniculus(rabbit (A946 2020))(info)GCA_013371645.1

•Tupaia chinensis(Chinese tree shrew (2013 BGI))(info)GCF_000334495.1

•Tupaia chinensis(Chinese tree shrew (KIZ-2021 2023))(info)GCA_033439345.1

•Tupaia tana(large tree shrew (BS70 2022))(info)GCA_026018925.1

•Cynocephalus volans(Philippine flying lemur (mCynVol1 alternate hap 2022))(info)GCA_027409165.1

•Cynocephalus volans(Philippine flying lemur (primary hap 2022 genbank))(info)GCA_027409185.1

•Cynocephalus volans(Philippine flying lemur (primary hap 2022 refseq))(info)GCF_027409185.1

Galeopterus

Galeopterus variegatus

•Galeopterus variegatus(Sunda flying lemur (2014 WashU))(info)GCF_000696425.1

•Galeopterus variegatus(Sunda flying lemur (US047 2019 Broad))(info)GCA_004027255.1

•Lycaon pictus(African hunting dog)(info)GCA_001887905.1

•Lycaon pictus(African hunting dog (LycPic1hap1 2024))(info)GCA_040955645.1

•Lycaon pictus(African hunting dog (LycPic1hap2 2024))(info)GCA_040955705.1

Vulpes

•Vulpes lagopus(Arctic fox (Blue_001 2021 refseq))(info)GCF_018345385.1

•Vulpes corsac(Corsac fox (zsh2022 2023))(info)GCA_030463245.1

Vulpes vulpes

•Vulpes vulpes(red fox (BD-2025 2025))(info)GCF_048418805.1

•Vulpes vulpes(red fox (hap1 2024))(info)GCA_964106825.2

•Vulpes vulpes(red fox (hap2 2024))(info)GCA_964106925.2

•Vulpes vulpes(red fox (tameXaggressive cross 2018))(info)GCF_003160815.1

•Vulpes ferrilata(Tibetan sand fox (lyu1992 2022))(info)GCA_024500485.1

Canis

•Canis latrans(coyote (coyote_06102 2023))(info)GCA_034620425.1

Canis lupus

•Canis lupus(gray wolf (2021))(info)GCA_905319855.2

•Canis lupus(gray wolf (alternate hap 2021))(info)GCA_905319845.1

Canis lupus dingo

•Canis lupus dingo(dingo (2020 Alpine COOINDA U.NSW))(info)GCF_012295265.1

•Canis lupus dingo(dingo (Sandy 2020 James Cook U))(info)GCF_003254725.2

Canis lupus familiaris

•Canis lupus familiaris(dog (Basenji MU ID 185726 2019))(info)GCA_004886185.2

•Canis lupus familiaris(dog (Basenji UNSW-BAS-2019 2021))(info)GCA_013276365.2

•Canis lupus familiaris(dog (Bernese Mountain Dog BD 2023))(info)GCA_031010765.1

•Canis lupus familiaris(dog (Bernese Mountain Dog OD 2023))(info)GCA_031010635.1

•Canis lupus familiaris(dog (boxer Tasha 2011))(info)GCF_000002285.3

•Canis lupus familiaris(dog (boxer Tasha 2020))(info)GCF_000002285.5

•Canis lupus familiaris(dog (Cairn Terrier CA611 2023))(info)GCA_031010295.1

•Canis lupus familiaris(dog (German shepard Mischka 2020))(info)GCF_011100685.1

•Canis lupus familiaris(dog (German Shepherd Nala 2020))(info)GCA_008641055.3

•Canis lupus familiaris(dog (Labrador retriever 2023))(info)GCA_031165255.1

•Canis lupus familiaris(dog (labrador SID07034 2020))(info)GCF_014441545.1

Canis lupus baileyi

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 refseq))(info)GCF_048164855.1

•Canis lupus baileyi(Mexican gray wolf (hap2 2025))(info)GCA_048164845.1

Urocyon

•Urocyon cinereoargenteus(gray fox (Vermont ataVT051 2023))(info)GCA_032313775.1

Nyctereutes

•Nyctereutes procyonoides(raccoon dog (2021))(info)GCF_905146905.1

Ursidae

Ursus

Ursus americanus

•Ursus americanus(American black bear (L20-20 alternate hap 2022))(info)GCA_024610745.1

•Ursus americanus(American black bear (L20-20 primary hap 2022))(info)GCA_024610735.1

•Ursus americanus(American black bear (UA15103 2021))(info)GCF_020975775.1

Ursus arctos

•Ursus arctos(brown bear (v2.0 North America Adak 2023))(info)GCF_023065955.2

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v2 2018))(info)GCF_003584765.2

Ursus maritimus

•Ursus maritimus(polar bear (Baiyulong BGI 2014 refseq))(info)GCF_000687225.1

•Ursus maritimus(polar bear (UCSC 2021))(info)GCF_017311325.1

Ailuropoda

•Ailuropoda melanoleuca(giant panda (Jingjing v3 2020))(info)GCF_002007445.2

•Neogale vison(American mink (2018))(info)GCA_900108605.1

•Neogale vison(American mink (hap1 2024))(info)GCA_964106545.1

•Neogale vison(American mink (hap2 2024))(info)GCA_964106205.1

•Neogale vison(American mink (M4711 2021 Dalhousie U))(info)GCF_020171115.1

Mustela

•Mustela nigripes(black-footed ferret (SB6536 2022))(info)GCF_022355385.1

Mustela putorius

Mustela putorius furo

•Mustela putorius furo(domestic ferret (JIRA1106 JCVI 2020))(info)GCF_011764305.1

•Mustela putorius furo(domestic ferret (Sable 2011 Broad))(info)GCA_000239315.1

Mustela erminea

•Mustela erminea(ermine (2020))(info)GCF_009829155.1

•Mustela erminea(ermine (alternate hap 2020))(info)GCA_009829165.1

Mustela lutreola

•Mustela lutreola(European mink (alternate hap 2023))(info)GCA_030435785.1

•Mustela lutreola(European mink (primary hap 2023 refseq))(info)GCF_030435805.1

Mustela nivalis

•Mustela nivalis(least weasel (hap1.1 2025))(info)GCA_964662115.1

•Mustela nivalis(least weasel (hap2.1 2025))(info)GCA_964662095.1

Guloninae

Gulo

Gulo gulo

•Gulo gulo luscus(American wolverine (FN33715 2022))(info)GCA_024509225.1

Martes

•Martes martes(European pine marten (primary hap 2023))(info)GCA_963455335.1

Melinae

Meles

Meles meles

•Meles meles(Eurasian badger (2021))(info)GCA_922990625.1

•Meles meles(Eurasian badger (v3.2 2022))(info)GCA_922984935.2

Lutrinae

Lutra

Lutra lutra

•Lutra lutra(Eurasian river otter (2020))(info)GCF_902655055.1

•Lutra lutra(Eurasian river otter (alternate hap 2019))(info)GCA_902653095.1

Pteronura

•Pteronura brasiliensis(giant otter)(info)GCA_004024605.1

Lontra

•Lontra canadensis(northern American river otter)(info)GCF_010015895.1

Enhydra

Enhydra lutris

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 refseq))(info)GCF_002288905.1

Mellivoriane

Mellivora

•Mellivora capensis(ratel)(info)GCA_004024625.1

Ailuridae

Ailurus

•Ailurus styani(lesser panda (RP43 2017))(info)GCA_002007465.1

Mephitidae

Spilogale

•Spilogale gracilis(western spotted skunk)(info)GCA_004023965.1

Pinnipedia

Otariidae

Zalophus

Zalophus californianus

•Zalophus californianus(California sea lion (alternate hap 2019))(info)GCA_009762295.1

•Zalophus californianus(California sea lion (LMU 2018 refseq))(info)GCF_900631625.1

•Zalophus californianus(California sea lion (mZalCal1 alternate hap 2020))(info)GCA_009762295.2

•Zalophus californianus(California sea lion (v2 primary hap 2020))(info)GCF_009762305.2

Callorhinus

Callorhinus ursinus

•Callorhinus ursinus(northern fur seal)(info)GCF_003265705.1

•Callorhinus ursinus(northern fur seal (GAN/ISIS: 27379988/994484 2025))(info)GCF_003265705.2

Eumetopias

•Eumetopias jubatus(Steller sea lion)(info)GCF_004028035.1

•Halichoerus grypus(gray seal (241Hg 2020))(info)GCF_012393455.1

•Halichoerus grypus(gray seal (hap1.1 2025))(info)GCA_964656455.1

•Halichoerus grypus(gray seal (hap2.1 2025))(info)GCA_964656465.1

Phoca

•Phoca vitulina(harbor seal)(info)GCF_004348235.1

Monachinae

Monachini

Neomonachus

•Neomonachus schauinslandi(Hawaiian monk seal (2021 Johns Hopkins U))(info)GCF_002201575.2

Miroungini

Mirounga

Mirounga angustirostris

•Mirounga angustirostris(northern elephant seal (BS05 2019 Broad))(info)GCA_004023865.1

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap1 2023 genbank))(info)GCA_029215605.1

•Mirounga angustirostris(Northern elephant seal (CCGP_5_RB_7025 hap1 2023 refseq))(info)GCF_029215605.1

•Mirounga angustirostris(northern elephant seal (CCGP_5_RB_7025 hap2 2023))(info)GCA_029215635.1

•Mirounga angustirostris(northern elephant seal (v3 JK_09032017 2022))(info)GCF_021288785.2

•Mirounga leonina(southern elephant seal)(info)GCF_011800145.1

Lobodontini

Leptonychotes

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 refseq))(info)GCF_000349705.1

Odobenidae

Odobenus

Odobenus rosmarus

•Odobenus rosmarus divergens(Pacific walrus)(info)GCF_000321225.1

•Panthera tigris(tiger)(info)GCF_018350195.1

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 refseq))(info)GCF_000464555.1

Panthera onca

•Panthera onca(jaguar (BS21 2019))(info)GCA_004023805.1

•Panthera onca(jaguar (hap1 2025))(info)GCA_046562885.1

•Panthera onca(jaguar (hap2 2025))(info)GCA_046562875.1

•Panthera onca(jaguar (Sample0147 2023))(info)GCF_028533385.1

Panthera pardus

•Panthera pardus(leopard (Hobbes primary hap 2022))(info)GCF_024362965.1

•Panthera pardus(leopard (Maewha 2016 refseq))(info)GCF_001857705.1

•Panthera leo(lion)(info)GCF_018350215.1

•Panthera uncia(snow leopard (11264 2022))(info)GCF_023721935.1

Neofelis

Neofelis nebulosa

•Neofelis nebulosa(clouded leopard (mNeoNeb1 alternate hap 2023))(info)GCA_028018655.1

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 refseq))(info)GCF_028018385.1

Felinae

Felis

•Felis nigripes(black-footed cat)(info)GCA_004023925.1

Felis catus

•Felis catus(domestic cat (Abyssinian Cinnamon 2017 WashU))(info)GCF_000181335.3

•Felis catus(domestic cat (Abyssinian Cinnamon 2021 WashU))(info)GCA_000181335.5

•Felis catus(domestic cat (Abyssinian Cinnamon 2021))(info)GCA_000181335.6

•Felis catus(domestic cat (Fca126 2021 Texas A&M U))(info)GCF_018350175.1

Lynx

Lynx rufus

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022))(info)GCA_022079275.1

•Lynx rufus(bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022))(info)GCF_022079265.1

Lynx canadensis

•Lynx canadensis(Canada lynx (alternate hap LIC74 2019))(info)GCA_007474575.1

•Lynx canadensis(Canada lynx (LIC74 v2 alternate hap 2020))(info)GCA_007474575.2

•Lynx canadensis(Canada lynx (LIC74 v2 primary hap 2020))(info)GCF_007474595.2

Acinonyx

Acinonyx jubatus

•Acinonyx jubatus(cheetah (Ajub_Pintada_27869175 2022))(info)GCF_027475565.1

•Acinonyx jubatus(cheetah (Rico 2018))(info)GCF_003709585.1

Prionailurus

•Prionailurus viverrinus(fishing cat (Anna 2022 U Missouri))(info)GCF_022837055.1

•Prionailurus bengalensis(leopard cat)(info)GCF_016509475.1

Leopardus

•Leopardus geoffroyi(Geoffroy's cat)(info)GCF_018350155.1

Herpailurus

•Herpailurus yagouaroundi(jaguarundi)(info)GCF_014898765.1

Puma

Puma concolor

•Puma concolor(puma (L17-30 alternate hap 2023))(info)GCA_028749965.1

•Puma concolor(puma (L17-30 primary hap 2023))(info)GCA_028749985.1

•Puma concolor(puma (SC36_Marlon 2018 refseq))(info)GCF_003327715.1

Viverridae

Paradoxurinae

Paradoxurus

•Paradoxurus hermaphroditus(Asian palm civet)(info)GCA_004024585.1

Herpestidae

Mungos

•Mungos mungo(banded mongoose)(info)GCA_004023785.1

Helogale

•Helogale parvula(dwarf mongoose)(info)GCA_004023845.1

Suricata

•Suricata suricatta(meerkat (VVHF042 2019 DNA Zoo refseq))(info)GCF_006229205.1

Eupleridae

Euplerinae

Cryptoprocta

•Cryptoprocta ferox(fossa)(info)GCA_004023885.1

Hyaenidae

Hyaena

Hyaena hyaena

•Hyaena hyaena(striped hyena (BS54 2019 Broad))(info)GCA_004023945.1

•Hyaena hyaena(striped hyena (Hyena2069 2018 Potsdam U))(info)GCF_003009895.1

•Vicugna pacos(alpaca (2025))(info)GCF_048564905.1

•Vicugna pacos(alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.4

Camelus

Camelus dromedarius

•Camelus dromedarius(Arabian camel (Drom800 2019 refseq))(info)GCF_000803125.2

•Camelus dromedarius(Arabian camel (hap2 2024))(info)GCA_036321565.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 genbank))(info)GCA_036321535.1

•Camelus dromedarius(Arabian camel (paternal hap 2024 refseq))(info)GCF_036321535.1

Camelus bactrianus

•Camelus bactrianus(Bactrian camel (Alxa 2014 refseq))(info)GCF_000767855.1

•Camelus bactrianus(Bactrian camel YW-2024 2025)(info)GCF_048773025.1

Camelus ferus

•Camelus ferus(wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020))(info)GCF_009834535.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 refseq))(info)GCF_000311805.1

•Bison bison bison(American bison (2014 refseq))(info)GCF_000754665.1

Bos

Bos indicus x Bos taurus

•Bos indicus x Bos taurus(Angus cow (Angus x Brahman F1 Angus haplotype 2018))(info)GCA_003369685.2

•Bos indicus x Bos taurus(Brahman cow (Angus x Brahman F1 Brahman haplotype 2018))(info)GCF_003369695.1

•Bos javanicus(banteng 2023)(info)GCF_032452875.1

Bos taurus

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA))(info)GCF_002263795.3

•Bos taurus(cattle (Hereford UMD_3.1.1 2014))(info)GCF_000003055.6

•Bos grunniens(domestic yak (maiwa yakHY00 2019))(info)GCA_005887515.3

Bos frontalis

•Bos frontalis(gayal (CVASU_BF_001 2021))(info)GCA_017311355.1

•Bos frontalis(gayal (Nagaland 2019))(info)GCA_007844835.1

Bos mutus

•Bos mutus(wild yak (GX-2022 2023))(info)GCF_027580195.1

•Bos mutus(wild yak (yakQH1 2013))(info)GCF_000298355.1

Bos indicus

•Bos indicus(zebu cattle (Hainan HN024 2024))(info)GCA_039881165.1

•Bos indicus(zebu cattle (Nelore 2014 refseq))(info)GCF_000247795.1

•Bos indicus(zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023))(info)GCF_029378745.1

Bubalus

•Bubalus kerabau(carabao (swamp buffalo K-KA32 2023))(info)GCF_029407905.1

Bubalus bubalis

•Bubalus bubalis(water buffalo (Mediterranean 2018))(info)GCF_003121395.1

•Bubalus bubalis(water buffalo (Murrah 2021))(info)GCF_019923935.1

Caprinae

Ammotragus

•Ammotragus lervia(aoudad)(info)GCA_002201775.1

Ovis

•Ovis orientalis(Asiatic mouflon (Amuf_v1 2020))(info)GCA_014523465.1

Ovis canadensis

•Ovis canadensis(bighorn sheep (BS48 2019))(info)GCA_004026945.1

•Ovis canadensis(bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.2

Ovis aries

•Ovis aries(Rambouillet sheep (Baylor 2017))(info)GCF_002742125.1

•Ovis aries(Rambouillet sheep (U.Idaho 2021))(info)GCF_016772045.1

•Ovis aries(sheep (hu hu3095 2024))(info)GCA_040805955.1

•Ovis aries(sheep (OAR_USU_Benz2616 2023))(info)GCF_016772045.2

•Ovis aries(sheep (Texel 2015))(info)GCA_000298735.2

Capra

Capra hircus

•Capra hircus(goat (v2 San Clemente 2016 USDA))(info)GCF_001704415.2

•Capra hircus(Inner Mongolia cashmere goat (2024))(info)GCA_041735815.1

•Capra hircus(Saanen dairy goat)(info)GCA_015443085.1

•Capra aegagrus(wild goat)(info)GCA_000978405.1

Nilgiritragus

•Nilgiritragus hylocrius(Nilgiri tahr)(info)GCA_004026825.1

Capricornis

•Capricornis sumatraensis(Sumatran serow (serow.1 2024))(info)GCF_032405125.1

Budorcas

•Budorcas taxicolor(takin (Tak-1 2022))(info)GCF_023091745.1

Antilopinae

Pantholops

•Pantholops hodgsonii(chiru)(info)GCA_000400835.1

Saiga

•Saiga tatarica(saiga antelope)(info)GCA_004024985.1

Alcelaphinae

Beatragus

•Beatragus hunteri(hirola (BS46 2019 Broad))(info)GCA_004027495.1

Hippotraginae

Oryx

•Oryx dammah(scimitar-horned oryx)(info)GCF_014754425.2

•Rangifer tarandus(reindeer (2023))(info)GCA_963422255.1

•Rangifer tarandus(reindeer (US061 2019))(info)GCA_004026565.1

•Rangifer tarandus caribou(boreal woodland reindeer (boreal CA-31 2023))(info)GCA_019903745.2

Alces

Alces alces

•Alces alces(moose/elk (2024))(info)GCA_964270355.1

•Alces alces(moose/elk (AALL_1980 2023))(info)GCA_015832495.2

•Alces alces(moose/elk (MIG12-28694850 2019))(info)GCA_007570765.1

Capreolus

•Capreolus capreolus(western roe deer (2023))(info)GCA_951849835.1

Odocoileus

Odocoileus virginianus

•Odocoileus virginianus(white-tailed deer (Illinois 20LAN1187 2024))(info)GCF_023699985.2

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 refseq))(info)GCF_002102435.1

Cervinae

Cervus

•Cervus canadensis(elk (wapiti))(info)GCF_019320065.1

Cervus elaphus

•Cervus elaphus(red deer (2021))(info)GCF_910594005.1

•Cervus elaphus(red deer (alternate hap 2021))(info)GCA_910593805.1

•Cervus nippon(sika deer (Changchun, China MLH-2022 2023))(info)GCA_034195675.1

Dama

Dama dama

•Dama dama(fallow deer (Ldn47 2023))(info)GCF_033118175.1

•Dama dama(fallow deer (maternal hap SK-2024 2025))(info)GCA_048126745.1

•Dama dama(fallow deer (paternal hap SK-2024 2025))(info)GCA_048127045.1

Elaphurus

•Elaphurus davidianus(Pere David's deer)(info)GCA_002443075.1

Muntiacinae

Muntiacus

Muntiacus reevesi

•Muntiacus reevesi(Reeves' muntjac (alternate hap 2024))(info)GCA_963930665.1

•Muntiacus reevesi(Reeves' muntjac (primary hap 2024))(info)GCF_963930625.1

Moschidae

Moschus

•Moschus berezovskii(Chinese forest musk deer (Sichuan 2022))(info)GCF_022376915.1

•Moschus moschiferus(Siberian musk deer (BS20 2019 Broad))(info)GCA_004024705.1

Giraffidae

Giraffa

•Giraffa tippelskirchi(Masai giraffe (MA1 2016 Penn St))(info)GCA_001651235.1

Okapia

•Okapia johnstoni(okapi)(info)GCA_001660835.1

Antilocapridae

Antilocapra

•Antilocapra americana(pronghorn (PH2016 2021))(info)GCA_021018645.1

Tragulina

Tragulidae

Tragulus

•Tragulus javanicus(Java mouse-deer (US108 2019 Broad))(info)GCA_004024965.1

•Balaenoptera bonaerensis(Antarctic minke whale)(info)GCA_000978805.1

Balaenoptera musculus

•Balaenoptera musculus(blue whale (alternate hap JJ_BM4_2016_0621 2019))(info)GCA_008658375.1

•Balaenoptera musculus(Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020))(info)GCA_008658375.2

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v3 primary hap 2020))(info)GCF_009873245.2

Balaenoptera physalus

•Balaenoptera physalus(fin whale (hap1.1 2025))(info)GCA_965194825.1

•Balaenoptera physalus(fin whale (hap2.1 2025))(info)GCA_965194765.1

Balaenoptera acutorostrata

•Balaenoptera acutorostrata(minke whale (alternate hap 2023))(info)GCA_950005055.1

•Balaenoptera acutorostrata(minke whale (primary hap 2023 refseq))(info)GCF_949987535.1

•Balaenoptera acutorostrata scammoni(minke whale (2013 refseq))(info)GCF_000493695.1

Balaenoptera ricei

•Balaenoptera ricei(Rice's whale (hap1 2023))(info)GCA_028017805.1

•Balaenoptera ricei(Rice's whale (hap2 2023 refseq))(info)GCF_028023285.1

Balaenoptera borealis

•Balaenoptera borealis(sei whale (hap1.1 2025))(info)GCA_965194805.1

•Balaenoptera borealis(sei whale (hap2.1 2025))(info)GCA_965194725.1

Megaptera

•Megaptera novaeangliae(humpback whale (KW2013002 2024))(info)GCA_041834305.1

Eschrichtiidae

Eschrichtius

Eschrichtius robustus

•Eschrichtius robustus(grey whale)(info)GCA_004363415.1

•Eschrichtius robustus(grey whale (mEscRob2 alternate hap 2023))(info)GCA_028021475.1

•Eschrichtius robustus(grey whale (primary hap 2023 genbank))(info)GCA_028021215.1

•Eschrichtius robustus(grey whale (primary hap 2023 refseq))(info)GCF_028021215.1

Balaenidae

Eubalaena

Eubalaena glacialis

•Eubalaena glacialis(North Atlantic right whale (hap1 2023))(info)GCA_028571275.1

•Eubalaena glacialis(North Atlantic right whale (hap2 + XY 2023 refseq))(info)GCF_028564815.1

•Eubalaena japonica(North Pacific right whale)(info)GCA_004363455.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024))(info)GCA_964270905.1

•Leucopleurus acutus(Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024))(info)GCA_964270935.1

Tursiops

Tursiops truncatus

•Tursiops truncatus(common bottlenose dolphin (maternal 2020))(info)GCA_011762535.1

•Tursiops truncatus(common bottlenose dolphin (maternal Y refseq 2020))(info)GCF_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 refseq))(info)GCF_001922835.1

•Tursiops truncatus(common bottlenose dolphin (mTurTru1 2024))(info)GCF_011762595.2

•Tursiops truncatus(common bottlenose dolphin (paternal 2020))(info)GCA_011762515.1

Pseudorca

Pseudorca crassidens

•Pseudorca crassidens(false killer whale (hap1 2024 genbank))(info)GCA_039906515.1

•Pseudorca crassidens(false killer whale (hap1 2024 refseq))(info)GCF_039906515.1

•Pseudorca crassidens(false killer whale (hap2 2024))(info)GCA_039906525.1

Orcinus

Orcinus orca

•Orcinus orca(killer whale (2022))(info)GCF_937001465.1

•Orcinus orca(killer whale (alternate hap 2022))(info)GCA_937001455.1

•Orcinus orca(killer whale (Morgan 2013))(info)GCF_000331955.2

Globicephala

Globicephala melas

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 refseq))(info)GCF_963455315.2

•Globicephala melas(long-finned pilot whale (X-22926-18 2019))(info)GCF_006547405.1

Sagmatias

•Sagmatias obliquidens(Pacific white-sided dolphin)(info)GCF_003676395.1

Grampus

Grampus griseus

•Grampus griseus(Risso's dolphin (hap1.1 2024))(info)GCA_964374135.1

•Grampus griseus(Risso's dolphin (hap2.1 2024))(info)GCA_964374185.1

Delphinus

Delphinus delphis

•Delphinus delphis(saddleback dolphin (alternate hap 2023))(info)GCA_949987525.1

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 refseq))(info)GCF_949987515.1

•Delphinus delphis(saddleback dolphin (v2 primary hap 2024 refseq))(info)GCF_949987515.2

Stenella

Stenella coeruleoalba

•Stenella coeruleoalba(striped dolphin (alternate hap 2023))(info)GCA_951394445.1

•Stenella coeruleoalba(striped dolphin (primary hap 2023))(info)GCA_951394435.1

Lagenorhynchus

Lagenorhynchus albirostris

•Lagenorhynchus albirostris(white-beaked dolphin (alternate hap 2023))(info)GCA_949774935.1

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 refseq))(info)GCF_949774975.1

Monodontidae

Delphinapterus

Delphinapterus leucas

•Delphinapterus leucas(beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020))(info)GCA_009917745.1

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v3 2019))(info)GCF_002288925.2

Monodon

Monodon monoceros

•Monodon monoceros(narwhal (Baffin Bay 2019))(info)GCF_005190385.1

•Monodon monoceros(narwhal (Baffin Bay Population NGI 2022))(info)GCA_005190385.3

Ziphiidae

Mesoplodon

Mesoplodon densirostris

•Mesoplodon densirostris(Blainville's beaked whale (alternate hap 2022))(info)GCA_025094165.1

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 refseq))(info)GCF_025265405.1

Mesoplodon bidens

•Mesoplodon bidens(Sowerby's beaked whale (hap1 2024))(info)GCA_964165515.1

•Mesoplodon bidens(Sowerby's beaked whale (hap2 2024))(info)GCA_964148845.1

•Mesoplodon bidens(Sowerby's beaked whale (US080 2019))(info)GCA_004027085.1

Mesoplodon mirus

•Mesoplodon mirus(True's beaked whale (hap1.1 2024))(info)GCA_964341445.1

•Mesoplodon mirus(True's beaked whale (hap2.1 2024))(info)GCA_964341485.1

Ziphius

•Ziphius cavirostris(Cuvier's beaked whale)(info)GCA_004364475.1

Hyperoodon

Hyperoodon ampullatus

•Hyperoodon ampullatus(northern bottlenose whale (alternate hap 2023))(info)GCA_949752845.1

•Hyperoodon ampullatus(northern bottlenose whale (primary hap 2023))(info)GCA_949752795.1

Iniidae

Inia

Inia geoffrensis

•Inia geoffrensis(boutu (hap1 2024))(info)GCA_036417435.1

•Inia geoffrensis(boutu (hap2 2024))(info)GCA_036417475.1

Phocoenidae

Phocoena

Phocoena phocoena

•Phocoena phocoena(harbor porpoise (primary hap 2024 genbank))(info)GCA_963924675.1

•Phocoena phocoena(harbor porpoise (primary hap 2024 refseq))(info)GCF_963924675.1

Phocoena sinus

•Phocoena sinus(vaquita (alternate hap mPhoSin1 2019))(info)GCA_008692045.1

•Phocoena sinus(vaquita (mPhoSin1 2019))(info)GCF_008692025.1

Neophocaena

Neophocaena asiaeorientalis

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v2 wild 2018 refseq))(info)GCF_003031525.2

Platanistidae

Platanista

•Platanista minor(Indus River dolphin)(info)GCA_004363435.1

Physeteridae

Kogia

Kogia breviceps

•Kogia breviceps(pygmy sperm whale)(info)GCA_004363705.1

•Kogia breviceps(pygmy sperm whale (haplotype 1 2022 refseq))(info)GCF_026419965.1

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 2 2022))(info)GCA_026419985.1

Physeter

•Physeter macrocephalus(sperm whale (SW-GA 2023))(info)GCF_002837175.3

Lipotidae

Lipotes

•Lipotes vexillifer(Yangtze River dolphin (v1.1 BGI 2013 refseq))(info)GCF_000442215.2

Ancodonta

Hippopotamidae

Hippopotamus

Hippopotamus amphibius

•Hippopotamus amphibius(hippopotamus (BS01 2019 Broad))(info)GCA_004027065.1

•Hippopotamus amphibius(hippopotamus (HIP001 2018))(info)GCA_002995585.1

Hippopotamus amphibius kiboko

•Hippopotamus amphibius kiboko(hippopotamus (mHipAmp2 hap1 2023))(info)GCA_030028035.1

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 refseq))(info)GCF_030028045.1

Suina

Tayassuidae

Catagonus

•Catagonus wagneri(Chacoan peccary (BS20 v2 2019 Broad))(info)GCA_004024745.2

Suidae

Phacochoerus

•Phacochoerus africanus(common warthog (WHEZ1 2021))(info)GCF_016906955.1

Sus

Sus scrofa

•Sus scrofa(pig (Bamei 2023))(info)GCA_030704935.1

•Sus scrofa(pig (Duroc 2017))(info)GCF_000003025.6

•Sus scrofa(pig (Norwegian landrace 2024))(info)GCA_963921485.1

•Sus scrofa(pig (USMARCv1 2017))(info)GCA_002844635.1

•Sus scrofa(pig (Wuzhishan WZS1 2025))(info)GCA_048338725.1

•Molossus alvarezi(Alvarez's mastiff bat (A012 2023))(info)GCA_031001765.1

•Molossus alvarezi(Alvarez's mastiff bat (hap1 2024))(info)GCA_037157525.1

•Molossus alvarezi(Alvarez's mastiff bat (hap2 2024))(info)GCA_037176705.1

Molossus nigricans

•Molossus nigricans(northern black mastiff bat (mMolNig1 2022))(info)GCA_026936385.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap1 2024))(info)GCA_039880945.1

•Molossus nigricans(northern black mastiff bat (mMolNig1hap2 2024))(info)GCA_039880925.1

•Molossus molossus(Pallas's mastiff bat)(info)GCF_014108415.1

Mops

•Mops condylurus(Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024))(info)GCA_043748645.1

Tadarida

•Tadarida brasiliensis(Brazilian free-tailed bat (primary hap 2023))(info)GCA_030848825.1

Mormoopidae

Mormoops

•Mormoops blainvillei(Antillean ghost-faced bat)(info)GCA_004026545.1

Pteronotus

•Pteronotus parnellii(Parnell's mustached bat (2013))(info)GCA_000465405.1

•Pteronotus mesoamericanus(Parnell's mustached bat (Mesoamerican 2021))(info)GCF_021234165.1

•Artibeus intermedius(bat A.intermedius (hap2 2024))(info)GCA_038363225.1

•Artibeus intermedius(great fruit-eating bat (hap1 2024))(info)GCA_038363145.1

Artibeus lituratus

•Artibeus lituratus(great fruit-eating bat (mArtLit1hap2 2024))(info)GCA_038363175.2

•Artibeus lituratus(great fruit-eating bat (v2 hap1 2024))(info)GCA_038363095.2

Artibeus jamaicensis

•Artibeus jamaicensis(Jamaican fruit-eating bat (1a 2020 Wuhan U))(info)GCF_014825515.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (2021))(info)GCF_021234435.1

Sturnira

Sturnira hondurensis

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.1 Veracruz 20B 2020))(info)GCF_014824575.3

•Sturnira hondurensis(neotropical fruit bat)(info)GCF_014824575.2

Desmodontinae

Desmodus

Desmodus rotundus

•Desmodus rotundus(common vampire bat (v2 HL8 alternate hap 2022 genbank))(info)GCA_022682395.2

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 refseq))(info)GCF_022682495.2

•Desmodus rotundus(common vampire bat (v3 DRU21DN04 2018))(info)GCF_002940915.2

Phyllostominae

Phyllostomus

•Phyllostomus hastatus(greater spear-nosed bat (2021 Texas Tech U))(info)GCF_019186645.2

Phyllostomus discolor

•Phyllostomus discolor(pale spear-nosed bat (alternate hap MPI-MPIP 2019))(info)GCA_004115245.1

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020))(info)GCA_004115245.2

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020))(info)GCF_004126475.2

Micronycteris

•Micronycteris hirsuta(hairy big-eared bat (US037 2019 Broad))(info)GCA_004026765.1

Tonatia

•Tonatia bakeri(stripe-headed round-eared bat)(info)GCA_004024845.1

Glossophaginae

Glossophaga

Glossophaga mutica

•Glossophaga mutica(Merriam's long-tongued bat (hap1 2024))(info)GCA_039655065.1

•Glossophaga mutica(Merriam's long-tongued bat (hap2 2024))(info)GCA_039656995.1

Anoura

•Anoura caudifer(tailed tailless bat)(info)GCA_004027475.1

Carolliinae

Carollia

•Carollia perspicillata(Seba's short-tailed bat)(info)GCA_004027735.1

Vespertilionidae

Eptesicus

Eptesicus fuscus

•Eptesicus fuscus(big brown bat (BU_THK_EF1 2012))(info)GCF_000308155.1

•Eptesicus fuscus(big brown bat (TK198812 2023))(info)GCF_027574615.1

Myotis

•Myotis brandtii(Brandt's bat)(info)GCF_000412655.1

Myotis daubentonii

•Myotis daubentonii(Daubenton's bat (alternate hap 2023))(info)GCA_963242275.1

•Myotis daubentonii(Daubenton's bat (primary hap 2023 refseq))(info)GCF_963259705.1

•Myotis davidii(David's myotis bat)(info)GCF_000327345.1

Myotis emarginatus

•Myotis emarginatus(Geoffroy's bat (hap1.1 2025))(info)GCA_965115925.1

•Myotis emarginatus(Geoffroy's bat (hap2.1 2025))(info)GCA_965115945.1

•Myotis myotis(greater mouse-eared bat (2020 Bat1K))(info)GCF_014108235.1

•Myotis lucifugus(little brown bat)(info)GCF_000147115.1

Myotis nattereri

•Myotis nattereri(Natterer's bat (hap1.2 2025))(info)GCA_964212035.2

•Myotis nattereri(Natterer's bat (hap2.2 2025))(info)GCA_964212025.2

•Myotis pilosus(Rickett's big-footed myotis (AB-2021 2024))(info)GCA_036010255.1

Myotis mystacinus

•Myotis mystacinus(whiskered bat (hap1 2024))(info)GCA_964094495.2

•Myotis mystacinus(whiskered bat (hap2 2024))(info)GCA_964195625.1

Myotis yumanensis

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023))(info)GCA_028536395.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 refseq))(info)GCF_028538775.1

Plecotus

•Plecotus auritus(brown big-eared bat (primary hap 2023))(info)GCA_963455305.1

Pipistrellus

Pipistrellus pipistrellus

•Pipistrellus pipistrellus(common pipistrelle (2020))(info)GCA_903992545.1

•Pipistrellus pipistrellus(common pipistrelle (alternate hap 2020))(info)GCA_903992515.1

•Pipistrellus pipistrellus(common pipistrelle (Broad 2019))(info)GCA_004026625.1

•Pipistrellus pipistrellus(common pipistrelle (hap1.1 2025))(info)GCA_965203405.1

•Pipistrellus pipistrellus(common pipistrelle (hap2.1 2025))(info)GCA_965204225.1

•Pipistrellus hanaki(Hanaki's dwarf bat (2024))(info)GCA_964339955.1

•Pipistrellus kuhlii(Kuhl's pipistrelle (2020))(info)GCF_014108245.1

Pipistrellus nathusii

•Pipistrellus nathusii(Nathusius's pipistrelle (hap1.1 2025))(info)GCA_964656225.1

•Pipistrellus nathusii(Nathusius's pipistrelle (hap2.1 2025))(info)GCA_964656075.1

•Pipistrellus nathusii(Nathusius's pipistrelle (primary hap 2024))(info)GCA_963693515.1

Pipistrellus pygmaeus

•Pipistrellus pygmaeus(soprano pipistrelle (alternate hap 2023))(info)GCA_949987765.1

•Pipistrellus pygmaeus(soprano pipistrelle (primary hap 2023))(info)GCA_949987585.1

Nyctalus

Nyctalus leisleri

•Nyctalus leisleri(lesser noctule (v2 hap1 2025))(info)GCA_964264875.2

•Nyctalus leisleri(lesser noctule (v2 hap2 2025))(info)GCA_964264895.2

Murina

•Murina feae(little tube-nosed bat)(info)GCA_004026665.1

Cnephaeus

Cnephaeus nilssonii

•Cnephaeus nilssonii(northern bat (alternate hap 2023))(info)GCA_951640545.1

•Cnephaeus nilssonii(northern bat (primary hap 2023))(info)GCA_951640355.1

Antrozous

•Antrozous pallidus(pallid bat (TK200870 primary hap 2023))(info)GCA_027563665.1

Vespertilio

•Vespertilio murinus(particolored bat (primary hap 2024))(info)GCA_963924515.1

Lasiurus

•Lasiurus borealis(red bat)(info)GCA_004026805.1

Corynorhinus

Corynorhinus townsendii

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230055.1

•Corynorhinus townsendii(Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022))(info)GCA_026230045.1

Noctilionidae

Noctilio

•Noctilio leporinus(greater bulldog bat)(info)GCA_004026585.1

Emballonuridae

Emballonurinae

Saccopteryx

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 refseq))(info)GCF_036850765.1

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 refseq))(info)GCF_036850995.1

Rhynchonycteris

Rhynchonycteris naso

•Rhynchonycteris naso(proboscis bat (hap1 2024))(info)GCA_037038545.1

•Rhynchonycteris naso(proboscis bat (hap2 2024))(info)GCA_037038555.1

Miniopteridae

Miniopterus

•Miniopterus natalensis(Natal long-fingered bat)(info)GCF_001595765.1

Miniopterus schreibersii

•Miniopterus schreibersii(Schreibers' long-fingered bat (US075 2019))(info)GCA_004026525.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap1 2025))(info)GCA_964146895.2

•Miniopterus schreibersii(Schreibers' long-fingered bat (v2 hap2 2025))(info)GCA_964145185.2

Hipposideros larvatus sensu lato

Hipposideros larvatus

•Hipposideros larvatus(bat H.larvatus (China 20210929_DDb primary hap 2024))(info)GCA_043727955.1

•Hipposideros larvatus(intermediate roundleaf bat (primary hap 2023))(info)GCA_031876335.1

•Hipposideros galeritus(Cantor's roundleaf bat)(info)GCA_004027415.1

•Hipposideros armiger(great roundleaf bat (v2 ML-2016 2016))(info)GCF_001890085.2

Doryrhina

•Doryrhina cyclops(cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024))(info)GCA_043880285.1

Aselliscus

•Aselliscus stoliczkanus(Stoliczka's trident bat (China 2021113_DDA primary hap 2024))(info)GCA_043727835.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat)(info)GCA_001888835.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCA_036562045.1

•Rhinolophus sinicus(Chinese rufous horseshoe bat (RSC01 2024))(info)GCF_036562045.2

Rhinolophus ferrumequinum

•Rhinolophus ferrumequinum(greater horseshoe bat (MPI-CBG alternate hap 2019))(info)GCA_004115295.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v2 MPI-CBG 2019))(info)GCF_004115265.2

•Rhinolophus affinis(intermediate horseshoe bat (China 20211001_DDa primary hap 2024))(info)GCA_043728065.1

Rhinolophus hipposideros

•Rhinolophus hipposideros(lesser horseshoe bat (hap1 2024))(info)GCA_964194185.1

•Rhinolophus hipposideros(lesser horseshoe bat (hap2 2024))(info)GCA_964194215.1

Rhinolophus perniger

•Rhinolophus perniger lanosus(northern woolly horseshoe bat (20210929_DDc primary hap 2024))(info)GCA_043748575.1

•Rhinolophus trifoliatus(trefoil horseshoe bat (Malaysia primary hap 2024))(info)GCA_043728145.1

•Rhinolophus yonghoiseni(Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024))(info)GCA_043880425.1

Rhinopomatidae

Rhinopoma

•Rhinopoma microphyllum(greater mouse-tailed bat (20210906_DDa primary hap 2024))(info)GCA_043880545.1

Craseonycteridae

Craseonycteris

•Craseonycteris thonglongyai(hog-nosed bat)(info)GCA_004027555.1

Megadermatidae

Lyroderma

•Lyroderma lyra(Indian false vampire)(info)GCA_004026885.1

Megaderma

•Megaderma spasma(lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024))(info)GCA_043880595.1

•Pteropus alecto(black flying fox)(info)GCF_000325575.1

Pteropus vampyrus

•Pteropus vampyrus(Indian flying fox)(info)GCF_902729225.1

•Pteropus vampyrus(large flying fox)(info)GCF_000151845.1

Eidolon

•Eidolon helvum(straw-colored fruit bat)(info)GCA_000465285.1

Rousettinae

Rousettus

Rousettus aegyptiacus

•Rousettus aegyptiacus(Egyptian rousette (1219 2016 Boston U))(info)GCF_001466805.2

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 refseq))(info)GCF_014176215.1

•Rousettus leschenaultii(Leschenault's rousette (2020))(info)GCA_015472975.1

Cynopterinae

Cynopterus

•Cynopterus sphinx(Indian short-nosed fruit bat (CYSPWHU 2023))(info)GCA_030015415.1

Macroglossinae

Macroglossus

•Macroglossus sobrinus(long-tongued fruit bat (US102 2019 Broad))(info)GCA_004027375.1

•Tapirus indicus(Asiatic tapir (hap1 2023))(info)GCA_031878655.1

•Tapirus indicus(Asiatic tapir (hap2 2023))(info)GCA_031878705.1

•Tapirus terrestris(Brazilian tapir)(info)GCA_004025025.1

Equidae

Equus

Equus asinus

•Equus asinus(ass (Dezhou 2021))(info)GCF_016077325.2

•Equus asinus(ass (Donkey D_3611 2024))(info)GCF_041296235.1

•Equus asinus(ass (Maral har 2015 refseq))(info)GCF_001305755.1

Equus caballus

•Equus caballus(horse (maternal 2024))(info)GCA_036418255.1

•Equus caballus(horse (paternal hap 2024))(info)GCA_036426135.1

•Equus caballus(horse (thoroughbred H_3958 2024))(info)GCF_041296265.1

•Equus caballus(horse (Twilight 2018))(info)GCF_002863925.1

•Equus quagga(plains zebra (Etosha38 2022 UCLA))(info)GCF_021613505.1

Equus przewalskii

•Equus przewalskii(Przewalski's horse (Burgud 2014 refseq))(info)GCF_000696695.1

•Equus przewalskii(Przewalski's horse (Varuska primary hap 2024))(info)GCF_037783145.1

Rhinocerotidae

Diceros

Diceros bicornis

•Diceros bicornis(black rhinoceros (BS38 2019 Broad))(info)GCA_004027315.1

Diceros bicornis minor

•Diceros bicornis minor(black rhinoceros (alternate hap 2021))(info)GCA_020826835.1

•Diceros bicornis minor(black rhinoceros (primary hap 2021 refseq))(info)GCF_020826845.1

Ceratotherium

Ceratotherium simum

•Ceratotherium simum cottoni(northern white rhinoceros)(info)GCA_004027795.1

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 refseq))(info)GCF_000283155.1

Dicerorhinus

Dicerorhinus sumatrensis

•Dicerorhinus sumatrensis sumatrensis(Sumatran rhinoceros (Ipuh 2017))(info)GCA_002844835.1

•Manis pentadactyla(Chinese pangolin (2020 Yunnan U))(info)GCF_014570555.1

•Manis pentadactyla(Chinese pangolin (hap1 2023))(info)GCF_030020395.1

•Manis pentadactyla(Chinese pangolin (hap2 mManPen7 2023))(info)GCA_030020945.1

•Manis pentadactyla(Chinese pangolin (MPE899 2014 WashU))(info)GCA_000738955.1

Manis javanica

•Manis javanica(Malayan pangolin (MJ-LG 2024))(info)GCF_040802235.1

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 refseq))(info)GCF_001685135.1

•Manis javanica(Malayan pangolin YNU ManJav 2.0)(info)GCF_014570535.1

Eulipotyphla

Talpidae

Scalopus

•Scalopus aquaticus(eastern mole)(info)GCA_004024925.1

Talpa

Talpa europaea

•Talpa europaea(European mole (hap1 2024))(info)GCA_964194135.1

•Talpa europaea(European mole (hap2 2024))(info)GCA_964194205.1

•Talpa occidentalis(Iberian mole (v2.1 TD23 2020))(info)GCF_014898055.3

Uropsilus

•Uropsilus gracilis(gracile shrew mole)(info)GCA_004024945.1

Galemys

•Galemys pyrenaicus(Pyrenean desman (IBE-C5619 2021))(info)GCA_019455555.1

Condylura

•Condylura cristata(star-nosed mole)(info)GCF_000260355.1

•Sorex araneus(European shrew (alternate hap 2023))(info)GCA_027595995.1

•Sorex araneus(European shrew (GB8-d 2012))(info)GCF_000181275.1

•Sorex araneus(European shrew (primary hap 2023))(info)GCF_027595985.1

•Sorex fumeus(smoky shrew (2023))(info)GCF_029834395.1

Crocidurinae

Crocidura

•Crocidura indochinensis(Indochinese shrew (US011 2019 Broad))(info)GCA_004027635.1

Suncus

Suncus etruscus

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 alternate hap 2022))(info)GCA_024140225.1

•Suncus etruscus(white-toothed pygmy shrew (mSunEtr1 primary hap 2022))(info)GCF_024139225.1

Solenodontidae

Solenodon

•Solenodon paradoxus(Hispaniolan solenodon)(info)GCA_004363575.1

•Erinaceus europaeus(western European hedgehog (2012 refseq))(info)GCF_000296755.1

•Erinaceus europaeus(western European hedgehog (alternate hap 2023))(info)GCA_950295305.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 refseq))(info)GCF_950295315.1

•Bradypus variegatus(brown-throated sloth)(info)GCA_004027775.1

Megalonychidae

Choloepus

•Choloepus hoffmanni(Hoffmann's two-fingered sloth)(info)GCA_000164785.2

Choloepus didactylus

•Choloepus didactylus(southern two-toed sloth (mChoDid1 alternate hap 2020))(info)GCA_015220265.1

•Choloepus didactylus(southern two-toed sloth (mChoDid1 primary hap 2020))(info)GCF_015220235.1

Vermilingua

Myrmecophagidae

Myrmecophaga

•Myrmecophaga tridactyla(giant anteater)(info)GCA_004026745.1

Tamandua

Tamandua tetradactyla

•Tamandua tetradactyla(southern tamandua (mTamTet1 alternate hap 2022))(info)GCA_023853755.1

•Tamandua tetradactyla(southern tamandua (mTamTet1 primary hap 2022))(info)GCA_023851605.1

•Dasypus novemcinctus(nine-banded armadillo (v2 hap1 2023))(info)GCA_030445055.2

•Dasypus novemcinctus(nine-banded armadillo (v2 hap2 2023))(info)GCF_030445035.2

•Dasypus novemcinctus(nine-banded armadillo (v3.2 3-136 2012 Baylor))(info)GCF_000208655.3

Chlamyphoridae

Chaetophractus

•Chaetophractus vellerosus(Screaming hairy armadillo)(info)GCA_004027955.1

Tolypeutes

•Tolypeutes matacus(southern three-banded armadillo)(info)GCA_004025125.1

•Gracilinanus agilis(agile gracile mouse opossum)(info)GCF_016433145.1

Monodelphis

Monodelphis domestica

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 alternate hap 2023))(info)GCA_027917375.1

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 primary hap 2023 refseq))(info)GCF_027887165.1

•Monodelphis domestica(gray short-tailed opossum (MonDom5 2007))(info)GCF_000002295.2

•Macrotis lagotis(bilby (mMagLag1 2024))(info)GCA_037893015.1

•Macrotis lagotis(bilby (mMagLag1 2024))(info)GCF_037893015.1

Diprotodontia

Phalangeridae

Trichosurus

Trichosurus vulpecula

•Trichosurus vulpecula(common brushtail (alternate hap 2020))(info)GCA_011100645.1

•Trichosurus vulpecula(common brushtail (refseq 2020))(info)GCF_011100635.1

Vombatidae

Vombatus

•Vombatus ursinus(common wombat)(info)GCF_900497805.2

Phascolarctidae

Phascolarctos

•Phascolarctos cinereus(koala (Bilbo 61053 2022))(info)GCA_003287225.2

Petauridae

Petaurus

Petaurus breviceps

Petaurus breviceps papuanus

•Petaurus breviceps papuanus(sugar glider (PSGF00001 2023))(info)GCA_028583685.1

•Petaurus breviceps papuanus(sugar glider (PSGF00001 2023))(info)GCF_028583685.1

Macropodidae

Notamacropus

Notamacropus eugenii

•Notamacropus eugenii(tammar wallaby (alternate hap 2023))(info)GCA_028389975.1

•Notamacropus eugenii(tammar wallaby (Barry hap1 2025))(info)GCA_048593335.1

•Notamacropus eugenii(tammar wallaby (Barry hap2 2025))(info)GCA_048593345.1

•Notamacropus eugenii(tammar wallaby (v2 primary hap 2023 refseq))(info)GCF_028372415.1

Dasyuromorphia

Dasyuridae

Dasyurus

•Dasyurus viverrinus(eastern quoll)(info)GCA_020854095.1

Dasyurus maculatus

•Dasyurus maculatus(spotted-tailed quoll (Chaos hap1 2025))(info)GCA_048593285.1

•Dasyurus maculatus(spotted-tailed quoll (Chaos hap2 2025))(info)GCA_048593245.1

Sminthopsis

Sminthopsis crassicaudata

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 2025))(info)GCF_048593235.1

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 hap1 2025))(info)GCA_048593235.1

•Sminthopsis crassicaudata(fat-tailed dunnart (SCR6 hap2 2025))(info)GCA_048593295.1

Sarcophilus

Sarcophilus harrisii

•Sarcophilus harrisii(Tasmanian devil (McLovin hap1 2025))(info)GCA_048593225.1

•Sarcophilus harrisii(Tasmanian devil (McLovin hap2 2025))(info)GCA_048593325.1

•Sarcophilus harrisii(Tasmanian devil (primary hap 2019))(info)GCF_902635505.1

Antechinus

•Antechinus flavipes(yellow-footed antechinus (v2 Samford, QLD, Australia AdamAnt 2021))(info)GCF_016432865.1

Notoryctemorphia

Notoryctidae

Notoryctes

•Notoryctes typhlops(marsupial mole (Waite Creek area ABTC07570 2025))(info)GCA_048126345.1

•Dromiciops gliroides(monito del monte (mDroGli1 alternate hap 2021))(info)GCA_019395325.1

•Dromiciops gliroides(monito del monte (primary hap 2021 refseq))(info)GCF_019393635.1

Tachyglossus aculeatus

•Tachyglossus aculeatus(Australian echidna (mTacAcu1 alternate hap 2020))(info)GCA_015852515.1

•Tachyglossus aculeatus(Australian echidna (mTacAcu1 primary hap 2020))(info)GCF_015852505.1

Ornithorhynchidae

Ornithorhynchus

Ornithorhynchus anatinus

•Ornithorhynchus anatinus(platypus (alternate hap Pmale09 2020))(info)GCA_004115175.2

•Ornithorhynchus anatinus(platypus (Pmale09 v4 2020))(info)GCF_004115215.2