GenArk taxonomy - Legacy

View list of species as table for Legacy

686 accessions

root

cellular organisms

•Orycteropus afer(aardvark (BS58 2019 Broad))(info)GCA_004365145.1

Proboscidea

Elephantidae

Loxodonta

•Loxodonta africana(African savanna elephant (2009 genbank))(info)GCA_000001905.1

•Chrysochloris asiatica(Cape golden mole (BS56 2019 Broad))(info)GCA_004027935.1

Tenrecidae

Tenrecinae

Echinops

•Echinops telfairi(small Madagascar hedgehog)(info)GCA_000313985.1

•Trichechus manatus latirostris(Florida manatee (Lorelei 2012 genbank))(info)GCA_000243295.1

•Arvicanthis niloticus(African grass rat (v1 paternal X 2020 genbank))(info)GCA_011762505.1

Mus

Mus musculus

•Mus musculus(house mouse (AKR_J v1 2016))(info)GCA_001624295.1

•Mus musculus(house mouse (A_J v1 2016))(info)GCA_001624215.1

•Mus musculus(house mouse (BALB_cJ v1 2016))(info)GCA_001632525.1

•Mus musculus(house mouse (C3H_HeJ v1 2016))(info)GCA_001632575.1

•Mus musculus(house mouse (CBA_J v1 2016))(info)GCA_001624475.1

•Mus musculus(house mouse (DBA_2J v1 2016))(info)GCA_001624505.1

•Mus musculus(house mouse (FVB_NJ v1 2016))(info)GCA_001624535.1

•Mus musculus(house mouse (GRCm38.p6 2017))(info)GCF_000001635.26

•Mus musculus(house mouse (LP_J v1 2016))(info)GCA_001632615.1

•Mus musculus(house mouse (NOD_ShiLtJ v1 2016))(info)GCA_001624675.1

•Mus musculus(house mouse (NZO_HlLtJ v1 2016))(info)GCA_001624745.1

•Mus musculus musculus(eastern European house mouse (PWK_PhJ v1 2016))(info)GCA_001624775.1

•Mus musculus domesticus(western European house mouse (WSB_EiJ v1 2016))(info)GCA_001624835.1

Mus caroli

•Mus caroli(Ryukyu mouse (v1 2017 EBI genbank))(info)GCA_900094665.2

•Mus caroli(Ryukyu mouse (v1 2017 EBI refseq))(info)GCF_900094665.1

•Mus spretus(western wild mouse (SPRET_EiJ v1 2016))(info)GCA_001624865.1

Apodemus

Sylvaemus group

•Apodemus sylvaticus(European woodmouse (2022 genbank))(info)GCA_947179515.1

Rattus

•Rattus norvegicus(Norway rat BN7 genbank)(info)GCA_015227675.2

Gerbillinae

Meriones

•Meriones unguiculatus(Mongolian gerbil (US013 2019 Broad))(info)GCA_004026785.1

Cricetidae

Cricetinae

Cricetulus

•Cricetulus griseus(Chinese hamster (17A/GY CHO 2018))(info)GCF_003668045.1

Mesocricetus

•Mesocricetus auratus(golden hamster (Baylor 2013 genbank))(info)GCA_000349665.1

Arvicolinae

Arvicola

•Arvicola amphibius(Eurasian water vole (v1 2020))(info)GCF_903992535.1

Chionomys

•Chionomys nivalis(European snow vole (primary hap 2023 genbank))(info)GCA_950005125.1

Neotominae

Onychomys

•Onychomys torridus(southern grasshopper mouse (US017 2019 Broad))(info)GCA_004026725.1

Peromyscus

•Peromyscus leucopus(white-footed mouse)(info)GCF_004664715.1

Spalacidae

Spalacinae

Nannospalax

•Nannospalax galili(Upper Galilee mountains blind mole rat (#2095 2014 genbank))(info)GCA_000622305.1

•Jaculus jaculus(lesser Egyptian jerboa (JJ0015 2012 genbank))(info)GCA_000280705.1

•Marmota marmota marmota(Alpine marmot (2015))(info)GCF_001458135.1

Marmota monax

•Marmota monax(woodchuck (CNAG 2019))(info)GCA_901343595.1

•Marmota monax(woodchuck (v1.0 LI92 2021))(info)GCF_021218885.1

Marmota flaviventris

•Marmota flaviventris(yellow-bellied marmot (hap1 2025 genbank))(info)GCA_047511675.1

•Marmota flaviventris(yellow-bellied marmot (SJ_83 v2.0 2019))(info)GCF_003676075.2

•Marmota flaviventris(yellow-bellied marmot (v1 2018))(info)GCF_003676075.1

Ictidomys

•Ictidomys tridecemlineatus(thirteen-lined ground squirrel (2011))(info)GCF_000236235.1

Sciurinae

Sciurini

Sciurus

•Sciurus vulgaris(Eurasian red squirrel (v1.1 2019))(info)GCA_902686455.1

Castorimorpha

Castoridae

Castor

•Castor canadensis(American beaver (US014 2019 Broad))(info)GCA_004027675.1

Hystricomorpha

Octodontidae

Octodon

•Octodon degus(degu (3935 2012 genbank))(info)GCA_000260255.1

Caviidae

Cavia

•Cavia porcellus(domestic guinea pig (2N 2008 genbank))(info)GCA_000151735.1

Bathyergidae

Heterocephalus

•Heterocephalus glaber(naked mole-rat (NMR 29 2012 genbank))(info)GCA_000247695.1

Lagomorpha

Ochotonidae

Ochotona

•Ochotona princeps(American pika 3.0 (2012 Broad genbank))(info)GCA_000292845.1

Leporidae

Oryctolagus

Oryctolagus cuniculus

•Oryctolagus cuniculus(rabbit (New Zealand White DNA-2018 2021 genbank))(info)GCA_009806435.2

•Oryctolagus cuniculus(rabbit (primary hap 2024 genbank))(info)GCA_964237555.1

•Oryctolagus cuniculus(rabbit (Thorbecke 2009 Broad genbank))(info)GCA_000003625.1

•Rhinopithecus bieti(black snub-nosed monkey (Rb0 v1 genbank 2016))(info)GCA_001698545.1

•Rhinopithecus bieti(black snub-nosed monkey (Rb0 v1 refseq 2016))(info)GCF_001698545.1

•Rhinopithecus roxellana(golden snub-nosed monkey (2014 Novogene))(info)GCA_000769185.1

Piliocolobus

Piliocolobus tephrosceles

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v1 2017))(info)GCA_002776525.1

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v2 2018))(info)GCF_002776525.2

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v3 2019))(info)GCF_002776525.3

•Piliocolobus tephrosceles(Ugandan red Colobus (RC106 v4 2019))(info)GCF_002776525.4

Cercopithecinae

Macaca

Macaca fascicularis

•Macaca fascicularis(crab-eating macaque (v1 582-1 2024))(info)GCF_037993035.1

•Macaca fascicularis(crab-eating macaque WashU 2013 genbank)(info)GCA_000364345.1

•Macaca fascicularis(crab-eating macaque WashU 2013 refseq)(info)GCF_000364345.1

•Macaca nemestrina(pig-tailed macaque (mMacNem1hap1 2024 genbank))(info)GCA_043159975.1

•Macaca mulatta(Rhesus monkey (2015 Baylor))(info)GCA_000772875.3

Chlorocebus

•Chlorocebus sabaeus(green monkey 1994-021 (2014 genbank))(info)GCA_000409795.2

Papio

Papio anubis

•Papio anubis(olive baboon (2017 HGSC genbank))(info)GCA_000264685.2

•Papio anubis(olive baboon (2017 HGSC RefSeq))(info)GCF_000264685.3

•Pongo pygmaeus(Bornean orangutan (v1 AG05252 alternate hap 2023 genbank))(info)GCA_028885525.1

•Pongo pygmaeus(Bornean orangutan (v1 AG05252 primary hap 2023 refseq))(info)GCF_028885625.1

Pongo abelii

•Pongo abelii(Sumatran orangutan (Susie 2018 genbank))(info)GCA_002880775.3

•Pongo abelii(Sumatran orangutan (v1 AG06213 primary hap 2023))(info)GCF_028885655.1

Homininae

Pan

Pan troglodytes

•Pan troglodytes(chimpanzee (Clint C0471 2018 genbank))(info)GCA_002880755.3

•Pan troglodytes(chimpanzee (v1 AG18354 alternate hap 2023 genbank))(info)GCA_028858805.1

•Pan troglodytes(chimpanzee (v1 AG18354 primary hap 2023 refseq))(info)GCF_028858775.1

Pan paniscus

•Pan paniscus(pygmy chimpanzee (Ulindi genbank 2015))(info)GCA_000258655.2

•Pan paniscus(pygmy chimpanzee (v1 primary hap 2023))(info)GCF_029289425.1

Homo

Homo sapiens

•Homo sapiens(human (HG00438.mat 2021))(info)GCA_018471515.1

•Homo sapiens(human (HG00438.pat 2021))(info)GCA_018472595.1

•Homo sapiens(human (HG00621.mat 2021))(info)GCA_018472605.1

•Homo sapiens(human (HG00621.pat 2021))(info)GCA_018472575.1

•Homo sapiens(human (HG00673.mat 2021))(info)GCA_018472565.1

•Homo sapiens(human (HG00673.pat 2021))(info)GCA_018472585.1

•Homo sapiens(human (HG00733 mat 2021))(info)GCA_018506975.1

•Homo sapiens(human (HG00733 pat 2021))(info)GCA_018506955.1

•Homo sapiens(human (HG00735.mat 2021))(info)GCA_018472765.1

•Homo sapiens(human (HG00735.pat 2021))(info)GCA_018472715.1

•Homo sapiens(human (HG00741.mat 2021))(info)GCA_018471095.1

•Homo sapiens(human (HG00741.pat 2021))(info)GCA_018471105.1

•Homo sapiens(human (HG01071.mat 2021))(info)GCA_018472685.1

•Homo sapiens(human (HG01071.pat 2021))(info)GCA_018472725.1

•Homo sapiens(human (HG01106.mat 2021))(info)GCA_018471345.1

•Homo sapiens(human (HG01106.pat 2021))(info)GCA_018471075.1

•Homo sapiens(human (HG01109.mat 2021))(info)GCA_018504365.1

•Homo sapiens(human (HG01109.pat 2021))(info)GCA_018504645.1

•Homo sapiens(human (HG01123.mat 2021))(info)GCA_018469665.1

•Homo sapiens(human (HG01123.pat 2021))(info)GCA_018469695.1

•Homo sapiens(human (HG01175.mat 2021))(info)GCA_018471085.1

•Homo sapiens(human (HG01175.pat 2021))(info)GCA_018471065.1

•Homo sapiens(human (HG01243.mat 2021))(info)GCA_018504375.1

•Homo sapiens(human (HG01243.pat 2021))(info)GCA_018504045.1

•Homo sapiens(human (HG01258.mat 2021))(info)GCA_018469405.1

•Homo sapiens(human (HG01258.pat 2021))(info)GCA_018469675.1

•Homo sapiens(human (HG01358.mat 2021))(info)GCA_018469865.1

•Homo sapiens(human (HG01358.pat 2021))(info)GCA_018469965.1

•Homo sapiens(human (HG01361.mat 2021))(info)GCA_018469685.1

•Homo sapiens(human (HG01361.pat 2021))(info)GCA_018469705.1

•Homo sapiens(human (HG01891.mat 2021))(info)GCA_018467155.1

•Homo sapiens(human (HG01891.pat 2021))(info)GCA_018467165.1

•Homo sapiens(human (HG01928.mat 2021))(info)GCA_018472695.1

•Homo sapiens(human (HG01928.pat 2021))(info)GCA_018472705.1

•Homo sapiens(human (HG01952.mat 2021))(info)GCA_018471545.1

•Homo sapiens(human (HG01952.pat 2021))(info)GCA_018471555.1

•Homo sapiens(human (HG01978.mat 2021))(info)GCA_018472865.1

•Homo sapiens(human (HG01978.pat 2021))(info)GCA_018472845.1

•Homo sapiens(human (HG02055 mat 2021))(info)GCA_018506125.1

•Homo sapiens(human (HG02055 pat 2021))(info)GCA_018505855.1

•Homo sapiens(human (HG02080.mat 2021))(info)GCA_018504085.1

•Homo sapiens(human (HG02080.pat 2021))(info)GCA_018504055.1

•Homo sapiens(human (HG02109 mat 2021))(info)GCA_018505825.1

•Homo sapiens(human (HG02109 pat 2021))(info)GCA_018505865.1

•Homo sapiens(human (HG02145 mat 2021))(info)GCA_018852585.1

•Homo sapiens(human (HG02145 pat 2021))(info)GCA_018852595.1

•Homo sapiens(human (HG02148.mat 2021))(info)GCA_018471535.1

•Homo sapiens(human (HG02148.pat 2021))(info)GCA_018471525.1

•Homo sapiens(human (HG02257.mat 2021))(info)GCA_018466845.1

•Homo sapiens(human (HG02257.pat 2021))(info)GCA_018466835.1

•Homo sapiens(human (HG02486.mat 2021))(info)GCA_018467015.1

•Homo sapiens(human (HG02486.pat 2021))(info)GCA_018467005.1

•Homo sapiens(human (HG02559.mat 2021))(info)GCA_018466985.1

•Homo sapiens(human (HG02559.pat 2021))(info)GCA_018466855.1

•Homo sapiens(human (HG02572.mat 2021))(info)GCA_018470445.1

•Homo sapiens(human (HG02572.pat 2021))(info)GCA_018470435.1

•Homo sapiens(human (HG02622.mat 2021))(info)GCA_018469875.1

•Homo sapiens(human (HG02622.pat 2021))(info)GCA_018469925.1

•Homo sapiens(human (HG02630.mat 2021))(info)GCA_018469955.1

•Homo sapiens(human (HG02630.pat 2021))(info)GCA_018469945.1

•Homo sapiens(human (HG02717.mat 2021))(info)GCA_018469935.1

•Homo sapiens(human (HG02717.pat 2021))(info)GCA_018470425.1

•Homo sapiens(human (HG02723.mat 2021))(info)GCA_018504065.1

•Homo sapiens(human (HG02723.pat 2021))(info)GCA_018504075.1

•Homo sapiens(human (HG02818.mat 2021))(info)GCA_018503585.1

•Homo sapiens(human (HG02818.pat 2021))(info)GCA_018503575.1

•Homo sapiens(human (HG02886.mat 2021))(info)GCA_018470455.1

•Homo sapiens(human (HG02886.pat 2021))(info)GCA_018470465.1

•Homo sapiens(human (HG03098 mat 2021))(info)GCA_018506165.1

•Homo sapiens(human (HG03098 pat 2021))(info)GCA_018506155.1

•Homo sapiens(human (HG03453.mat 2021))(info)GCA_018472855.1

•Homo sapiens(human (HG03453.pat 2021))(info)GCA_018473305.1

•Homo sapiens(human (HG03486 pat 2021))(info)GCA_018503245.1

•Homo sapiens(human (HG03486.mat 2021))(info)GCA_018503525.1

•Homo sapiens(human (HG03516.mat 2021))(info)GCA_018469425.1

•Homo sapiens(human (HG03516.pat 2021))(info)GCA_018469415.1

•Homo sapiens(human (HG03540.mat 2021))(info)GCA_018473295.1

•Homo sapiens(human (HG03540.pat 2021))(info)GCA_018473315.1

•Homo sapiens(human (HG03579.mat 2021))(info)GCA_018472825.1

•Homo sapiens(human (HG03579.pat 2021))(info)GCA_018472835.1

•Homo sapiens(human (NA18906.mat 2021))(info)GCA_018503255.1

•Homo sapiens(human (NA18906.pat 2021))(info)GCA_018503285.1

•Homo sapiens(human (NA19240.mat 2021))(info)GCA_018503275.1

•Homo sapiens(human (NA19240.pat 2021))(info)GCA_018503265.1

•Homo sapiens(human (NA20129 mat 2021))(info)GCA_018504635.1

•Homo sapiens(human (NA20129 pat 2021))(info)GCA_018504625.1

•Homo sapiens(human (NA21309 pat 2021))(info)GCA_018504665.1

•Homo sapiens(human (NA21309.mat 2021))(info)GCA_018504655.1

•Homo sapiens(human (NA24385 HG002 pri mat 2023))(info)GCA_018852615.2

•Homo sapiens(human (NA24385.mat 2021))(info)GCA_018852615.1

•Homo sapiens(human (NA24385.mat 2022))(info)GCA_021951015.1

•Homo sapiens(human (NA24385.pat 2021))(info)GCA_018852605.1

•Homo sapiens(human (NA24385.pat 2022))(info)GCA_021950905.1

•Homo sapiens(human (NA24631 mat 2021))(info)GCA_018506965.1

•Homo sapiens(human (NA24631 pat 2021))(info)GCA_018506945.1

Gorilla

Gorilla gorilla

Gorilla gorilla gorilla

•Gorilla gorilla gorilla(western lowland gorilla (Susie 2016))(info)GCA_900006655.3

•Gorilla gorilla gorilla(western lowland gorilla (v1.1 KB3781 2023))(info)GCF_029281585.1

•Gorilla gorilla gorilla(western lowland gorilla (v2.0 KB3781 2024 genbank))(info)GCA_029281585.2

•Gorilla gorilla gorilla(western lowland gorilla (v2.1 KB3781 2024 genbank))(info)GCA_029281585.3

Hylobatidae

Nomascus

•Nomascus leucogenys(northern white-cheeked gibbon (2012 GGSC))(info)GCA_000146795.3

Symphalangus

Symphalangus syndactylus

•Symphalangus syndactylus(siamang (v1 Jambi primary hap 2023))(info)GCF_028878055.1

•Symphalangus syndactylus(siamang (v2 Jambi alternate hap 2024))(info)GCA_028878085.2

•Symphalangus syndactylus(siamang (v2 Jambi primary hap 2024 genbank))(info)GCA_028878055.2

•Symphalangus syndactylus(siamang (v2 Jambi primary hap 2024 refseq))(info)GCF_028878055.2

Hylobates

Hylobates moloch

•Hylobates moloch(silvery gibbon (v1 HM0894 2020 UC Santa Cruz))(info)GCF_009828535.1

•Hylobates moloch(silvery gibbon (v2 HMO894 2020 UC Santa Cruz))(info)GCF_009828535.2

Saimiri boliviensis boliviensis

•Saimiri boliviensis boliviensis(Bolivian squirrel monkey (100643 v2.0 BCM 2021))(info)GCF_016699345.1

•Saimiri boliviensis boliviensis(Bolivian squirrel monkey (3227 Broad 2011))(info)GCF_000235385.1

Callitrichinae

Callithrix

Callithrix jacchus

•Callithrix jacchus(white-tufted-ear marmoset (2010 Wash U))(info)GCF_000004665.1

•Callithrix jacchus(white-tufted-ear marmoset (CJ-08-46 2017))(info)GCA_002754865.1

•Callithrix jacchus(white-tufted-ear marmoset (cj1700 genbank))(info)GCA_009663435.1

•Callithrix jacchus(white-tufted-ear marmoset (v1 paternal hap 2020))(info)GCA_011100535.1

•Callithrix jacchus(white-tufted-ear marmoset (v1.2 2021 genbank))(info)GCA_011100555.2

Aotidae

Aotus

•Aotus nancymaae(Ma's night monkey genbank)(info)GCA_000952055.2

•Propithecus coquereli(Coquerel's sifaka 6110/Marcella (2015 genbank))(info)GCA_000956105.1

Cheirogaleidae

Microcebus

•Microcebus murinus(gray mouse lemur genbank)(info)GCA_000165445.3

Lemuridae

Lemur

•Lemur catta(ring-tailed lemur BS26 Broad 2019)(info)GCA_004024665.1

•Nycticebus coucang(slow loris (BS32 2019))(info)GCA_004027815.1

•Nycticebus coucang(slow loris (primary hap 2022 genbank))(info)GCA_027406575.1

Scandentia

Tupaiidae

Tupaia

•Tupaia tana(large tree shrew (BS70 2019 Broad))(info)GCA_004365275.1

•Vicugna pacos(alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U))(info)GCF_000164845.3

•Vicugna pacos huacaya(alpaca (2015 BGI))(info)GCA_000767525.1

Camelus

•Camelus dromedarius(Arabian camel (2014 genbank))(info)GCA_000767585.1

•Camelus bactrianus(Bactrian camel (Alxa 2014 genbank))(info)GCA_000767855.1

•Camelus ferus(wild Bactrian camel (CB1 Naran 2013 genbank))(info)GCA_000311805.2

•Bison bison bison(American bison (2014 genbank))(info)GCA_000754665.1

Bos

Bos taurus

•Bos taurus(cattle (Hereford 2015))(info)GCA_000003205.6

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA))(info)GCF_002263795.1

•Bos taurus(cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA))(info)GCF_002263795.2

•Bos indicus(zebu cattle (Nelore 2014 genbank))(info)GCA_000247795.2

Bubalus

•Bubalus bubalis(water buffalo (Mediterranean 2013))(info)GCA_000471725.1

Caprinae

Ovis

•Ovis canadensis(bighorn sheep (v1 Bighorn MfBH-ARS-UI-01 2024))(info)GCF_042477335.1

Capra

Capra hircus

•Capra hircus(goat (v1 San Clemente 2016 USDA genbank))(info)GCA_001704415.1

•Capra hircus(goat (v1 San Clemente 2016 USDA refseq))(info)GCF_001704415.1

Antilocapridae

Antilocapra

•Antilocapra americana(pronghorn (BS35 2019 Broad))(info)GCA_004027515.1

Cervidae

Odocoileinae

Odocoileus

Odocoileus virginianus

•Odocoileus virginianus texanus(white-tailed deer (Pink-7 2017 genbank))(info)GCA_002102435.1

•Delphinapterus leucas(beluga whale (GAN/ISIS: 26980492/103006 v2 2017))(info)GCA_002288925.2

Monodon

•Monodon monoceros(narwhal (BS41 2019 Broad))(info)GCA_004026685.1

Ziphiidae

Mesoplodon

•Mesoplodon densirostris(Blainville's beaked whale (primary hap 2022 genbank))(info)GCA_025265405.1

Iniidae

Inia

•Inia geoffrensis(boutu (BS63 2019))(info)GCA_004363515.1

Delphinidae

Tursiops

Tursiops truncatus

•Tursiops truncatus(common bottlenose dolphin (maternal Y genbank 2020))(info)GCA_011762595.1

•Tursiops truncatus(common bottlenose dolphin (MMES2002162SC 2016 genbank))(info)GCA_001922835.1

Globicephala

Globicephala melas

•Globicephala melas(long-finned pilot whale (v1 primary hap 2023))(info)GCF_963455315.1

•Globicephala melas(long-finned pilot whale (v2 primary hap 2024 genbank))(info)GCA_963455315.2

Delphinus

•Delphinus delphis(saddleback dolphin (v1 primary hap 2023 genbank))(info)GCA_949987515.1

Lagenorhynchus

•Lagenorhynchus albirostris(white-beaked dolphin (primary hap 2023 genbank))(info)GCA_949774975.1

Phocoenidae

Phocoena

•Phocoena phocoena(harbor porpoise (BS71 2019))(info)GCA_004363495.1

Neophocaena

Neophocaena asiaeorientalis

Neophocaena asiaeorientalis asiaeorientalis

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 2018 refseq))(info)GCF_003031525.1

•Neophocaena asiaeorientalis asiaeorientalis(Yangtze finless porpoise (v1 wild 2018 genbank))(info)GCA_003031525.1

Physeteridae

Kogia

•Kogia breviceps(pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank))(info)GCA_026419965.1

Physeter

•Physeter macrocephalus(sperm whale (SW-GA 2019))(info)GCF_002837175.2

Lipotidae

Lipotes

Lipotes vexillifer

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 genbank))(info)GCA_000442215.1

•Lipotes vexillifer(Yangtze River dolphin (v1 BGI 2013 refseq))(info)GCF_000442215.1

Mysticeti

Balaenopteridae

Balaenoptera

•Balaenoptera musculus(blue whale (JJ_BM4_2016_0621 v2 2020))(info)GCA_009873245.2

Balaenoptera acutorostrata

•Balaenoptera acutorostrata(minke whale (primary hap 2023 genbank))(info)GCA_949987535.1

•Balaenoptera acutorostrata scammoni(minke whale (2013 genbank))(info)GCA_000493695.1

•Balaenoptera ricei(Rice's whale (hap2 2023 genbank))(info)GCA_028023285.1

Balaenidae

Eubalaena

•Eubalaena glacialis(North Atlantic right whale (hap2 2023 genbank))(info)GCA_028564815.1

Ancodonta

Hippopotamidae

Hippopotamus

Hippopotamus amphibius

•Hippopotamus amphibius kiboko(hippopotamus (v2 hap2 2023 genbank))(info)GCA_030028045.1

Suina

Tayassuidae

Catagonus

•Catagonus wagneri(Chacoan peccary (BS18 v1 2019 Broad))(info)GCA_004024745.1

•Panthera tigris altaica(Amur tiger (TaeGuk 2013 genbank))(info)GCA_000464555.1

•Panthera pardus(leopard (Maewha 2016 genbank))(info)GCA_001857705.1

Neofelis

•Neofelis nebulosa(clouded leopard (mNeoNeb1 primary hap 2023 genbank))(info)GCA_028018385.1

Felinae

Lynx

•Lynx canadensis(Canada lynx (LIC74 v1 2019))(info)GCF_007474595.1

Acinonyx

•Acinonyx jubatus(cheetah (AJU 981 2015))(info)GCA_001443585.1

Puma

•Puma concolor(puma (SC36_Marlon 2018 genbank))(info)GCA_003327715.1

Herpestidae

Suricata

Suricata suricatta

•Suricata suricatta(meercat (VVHF042 2019 DNA Zoo genbank))(info)GCA_006229205.1

•Suricata suricatta(meerkat (BS45 2019 Broad))(info)GCA_004023905.1

Caniformia

Canidae

Vulpes

•Vulpes lagopus(Arctic fox (US066 2019 Broad))(info)GCA_004023825.1

Canis

Canis lupus

•Canis lupus familiaris(dog (BS72 2019 Broad))(info)GCA_004027395.1

•Canis lupus baileyi(Mexican gray wolf (hap1 2025 genbank))(info)GCA_048164855.1

Ursidae

Ursus

Ursus arctos

•Ursus arctos(brown bear (v1.0 2022 WashU))(info)GCF_023065955.1

•Ursus arctos horribilis(brown bear (GAN/ISIS:MIG12 v1 2018))(info)GCF_003584765.1

•Ursus maritimus(polar bear (Baiyulong BGI 2014 genbank))(info)GCA_000687225.1

Ailuropoda

Ailuropoda melanoleuca

•Ailuropoda melanoleuca(giant panda (2009 BGI))(info)GCF_000004335.2

•Ailuropoda melanoleuca(giant panda (Jingjing v1 2017))(info)GCA_002007445.1

•Ailuropoda melanoleuca(giant panda (Jingjing v2 genbank 2020))(info)GCA_002007445.2

•Ailuropoda melanoleuca(giant panda (Jingjing v2 refseq 2020))(info)GCF_002007445.1

Pinnipedia

Otariidae

Zalophus

Zalophus californianus

•Zalophus californianus(California sea lion (BS06 2019 Broad))(info)GCA_004024565.1

•Zalophus californianus(California sea lion (v1 2019))(info)GCA_009762305.1

Neomonachus schauinslandi

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U genbank))(info)GCA_002201575.1

•Neomonachus schauinslandi(Hawaiian monk seal (2017 Johns Hopkins U refseq))(info)GCF_002201575.1

Miroungini

Mirounga

•Mirounga angustirostris(northern elephant seal (v2 JK_09032017 2021))(info)GCF_021288785.1

Lobodontini

Leptonychotes

•Leptonychotes weddellii(Weddell seal (WS11-02 2013 genbank))(info)GCA_000349705.1

•Mustela putorius furo(domestic ferret (Sable ID 1420 FGSC 2011))(info)GCF_000215625.1

•Mustela lutreola(European mink (primary hap 2023 genbank))(info)GCA_030435805.1

Melinae

Meles

•Meles meles(Eurasian badger (v3.1 2021))(info)GCF_922984935.1

Lutrinae

Enhydra

Enhydra lutris

•Enhydra lutris kenyoni(sea otter (GAN:26980312 2017 genbank))(info)GCA_002288905.2

Perissodactyla

Tapiridae

Tapirus

•Tapirus indicus(Asiatic tapir (BS100 BIUU 2019))(info)GCA_004024905.1

Equidae

Equus

•Equus asinus(ass (Maral har 2015 genbank))(info)GCA_001305755.1

•Equus caballus(horse (Twilight 2007 genbank))(info)GCA_000002305.1

•Equus przewalskii(Przewalski's horse (Burgud 2014 genbank))(info)GCA_000696695.1

Rhinocerotidae

Diceros

Diceros bicornis

•Diceros bicornis minor(black rhinoceros (primary hap 2021 genbank))(info)GCA_020826845.1

Ceratotherium

Ceratotherium simum

•Ceratotherium simum simum(southern white rhinoceros (SDZICR_KB13650 2012 genbank))(info)GCA_000283155.1

•Tadarida brasiliensis(Brazilian free-tailed bat (US034 2019))(info)GCA_004025005.1

•Desmodus rotundus(common vampire bat (v1 HL8 alternate hap 2022 genbank))(info)GCA_022682395.1

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 genbank))(info)GCA_022682495.1

•Desmodus rotundus(common vampire bat (v1 HL8 primary hap 2022 refseq))(info)GCF_022682495.1

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 genbank))(info)GCA_002940915.2

•Desmodus rotundus(common vampire bat (v2 DRU21DN04 2018 refseq))(info)GCF_002940915.1

•Desmodus rotundus(common vampire bat (v2 HL8 primary hap 2022 genbank))(info)GCA_022682495.2

Stenodermatinae

Artibeus

•Artibeus lituratus(great fruit-eating bat (v1 hap1 2024))(info)GCA_038363095.1

•Artibeus jamaicensis(Jamaican fruit-eating bat (US092 2019 Broad))(info)GCA_004027435.1

Sturnira

•Sturnira hondurensis(Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020))(info)GCF_014824575.1

Phyllostominae

Phyllostomus

•Phyllostomus discolor(pale spear-nosed bat (MPI-MPIP v1 2019))(info)GCF_004126475.1

Vespertilionidae

Myotis

•Myotis daubentonii(Daubenton's bat (primary hap 2023 genbank))(info)GCA_963259705.1

•Myotis myotis(greater mouse-eared bat (2019 Broad))(info)GCA_004026985.1

Myotis nattereri

•Myotis nattereri(Natterer's bat (hap1.1 2024))(info)GCA_964212035.1

•Myotis nattereri(Natterer's bat (hap2.1 2024))(info)GCA_964212025.1

•Myotis yumanensis(Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 genbank))(info)GCA_028538775.1

Nyctalus

Nyctalus leisleri

•Nyctalus leisleri(lesser noctule (v1 hap1 2024))(info)GCA_964264875.1

•Nyctalus leisleri(lesser noctule (v1 hap2 2024))(info)GCA_964264895.1

Emballonuridae

Emballonurinae

Saccopteryx

•Saccopteryx bilineata(greater sac-winged bat (primary hap 2024 genbank))(info)GCA_036850765.1

•Saccopteryx leptura(lesser sac-winged bat (primary hap 2024 genbank))(info)GCA_036850995.1

Miniopteridae

Miniopterus

Miniopterus schreibersii

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap1 2024))(info)GCA_964146895.1

•Miniopterus schreibersii(Schreibers' long-fingered bat (v1 hap2 2024))(info)GCA_964145185.1

Rousettus aegyptiacus

•Rousettus aegyptiacus(Egyptian rousette (US006 2019 Broad))(info)GCA_004024865.1

•Rousettus aegyptiacus(Egyptian rousette (v1 2020 genbank))(info)GCA_014176215.1

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 genbank))(info)GCA_001890085.1

•Hipposideros armiger(great roundleaf bat (v1 ML-2016 2016 refseq))(info)GCF_001890085.1

Rhinolophidae

Rhinolophinae

Rhinolophus

Rhinolophus ferrumequinum

•Rhinolophus ferrumequinum(greater horseshoe bat (mRhiFer1 2020))(info)GCA_014108255.1

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 genbank))(info)GCA_004115265.2

•Rhinolophus ferrumequinum(greater horseshoe bat (v1 MPI-CBG 2019 refseq))(info)GCF_004115265.1

•Talpa occidentalis(Iberian mole (v1 TD23 2020))(info)GCF_014898055.1

•Talpa occidentalis(Iberian mole (v2 TD23 2020))(info)GCF_014898055.2

•Erinaceus europaeus(western European hedgehog (2012 genbank))(info)GCA_000296755.1

•Erinaceus europaeus(western European hedgehog (primary hap 2023 genbank))(info)GCA_950295315.1

Pholidota

Manidae

Manis

•Manis javanica(Malayan pangolin (MP_PG03-UM 2016 genbank))(info)GCA_001685135.1

•Dasypus novemcinctus(nine-banded armadillo (v1 hap1 2023))(info)GCA_030445055.1

•Dasypus novemcinctus(nine-banded armadillo (v1 hap2 2023))(info)GCF_030445035.1

•Dasypus novemcinctus(nine-banded armadillo (v3.0 3-136 2012 Baylor genbank))(info)GCA_000208655.2

•Dasypus novemcinctus(nine-banded armadillo (v3.0 3-136 2012 Baylor refseq))(info)GCF_000208655.1

•Tamandua tetradactyla(southern tamandua (Broad 2019))(info)GCA_004025105.1

Folivora

Megalonychidae

Choloepus

•Choloepus didactylus(southern two-toed sloth (US054 2019 Broad))(info)GCA_004027855.1

•Trichosurus vulpecula(common brushtail (genbank 2020))(info)GCA_011100635.1

Phascolarctidae

Phascolarctos

•Phascolarctos cinereus(koala (Bilbo 61053 2017))(info)GCF_002099425.1

Macropodidae

Notamacropus

Notamacropus eugenii

•Notamacropus eugenii(tammar wallaby (v1 primary hap 2023 genbank))(info)GCA_028372415.1

•Notamacropus eugenii(tammar wallaby (v2 primary hap 2023 genbank))(info)GCA_028372415.2

•Monodelphis domestica(gray short-tailed opossum (mMonDom1 primary hap 2023 genbank))(info)GCA_027887165.1

Microbiotheria

Microbiotheriidae

Dromiciops

•Dromiciops gliroides(monito del monte (mDroGli1 primary hap 2021 genbank))(info)GCA_019393635.1

Dasyuromorphia

Dasyuridae

Sarcophilus

•Sarcophilus harrisii(Tasmanian devil)(info)GCF_000189315.1

Antechinus

•Antechinus flavipes(yellow-footed antechinus (v1 Samford, QLD, Australia AdamAnt 2021))(info)GCA_016432865.1

Ornithorhynchus anatinus

•Ornithorhynchus anatinus(platypus (Pmale09 2018 BGI))(info)GCA_002966995.1

•Ornithorhynchus anatinus(platypus (Pmale09 v1 2019))(info)GCF_004115215.1

•Ornithorhynchus anatinus(platypus (Pmale09 v3 2020))(info)GCA_004115215.3

•Podarcis raffonei(Aeolian wall lizard (La Canna islet primary hap 2022 genbank))(info)GCA_027172205.1

Teiioidea

Teiidae

Aspidoscelis

Aspidoscelis tigris group

Aspidoscelis tigris

•Aspidoscelis tigris stejnegeri(San Diegan tiger whiptail (v1.0 HBS 135688 primary hap 2022))(info)GCA_023333525.1

•Anolis sagrei ordinatus(brown anole (Geneva1000 2022 genbank))(info)GCA_025583915.1

•Pituophis catenifer annectens(gopher snake (HBS135680 alternate hap 2023 genbank))(info)GCA_029215685.1

Dipsadidae

Erythrolamprus

•Erythrolamprus reginae(royal ground snake (hap1 2023 genbank))(info)GCA_031021105.1

Alligator mississippiensis

•Alligator mississippiensis(American alligator (2023 genbank))(info)GCA_030867065.1

•Alligator mississippiensis(American alligator (chrom assembly 2023 genbank))(info)GCA_030867095.1

•Calypte anna(Anna's hummingbird (BGI_N300 2019 genbank))(info)GCA_003957555.2

Phaethornis

•Phaethornis superciliosus(long-tailed hermit (v1 PSU5 primary hap 2022))(info)GCA_023637945.1

Heliangelus

•Heliangelus exortis(tourmaline sunangel (hap1 2024 genbank))(info)GCA_036169615.1

Apodidae

Apodinae

Chaetura

•Chaetura pelagica(chimney swift (M959 v1.0 2014))(info)GCF_000747805.1

Apus

•Apus apus(common swift (bApuApu2 2021 genbank))(info)GCA_020740795.1

Caprimulgiformes

Caprimulgidae

Antrostomus

•Antrostomus carolinensis(chuck-will's-widow (BGI_N321 v1 2014))(info)GCF_000700745.1

•Patagioenas fasciata(band-tailed pigeon (v1 hap2 2024 genbank))(info)GCA_036971685.1

Streptopelia

Streptopelia turtur

•Streptopelia turtur(European turtle dove (v1.1 alternate hap 2019))(info)GCA_901699165.1

•Streptopelia turtur(European turtle dove (v1.1 primary hap 2019))(info)GCA_901699155.1

Columba

Columba livia

•Columba livia(rock pigeon (v1 racing homer maternal hap 2024))(info)GCA_036010775.1

•Columba livia(rock pigeon (v1 racing homer paternal W 2024))(info)GCA_036013475.1

•Columba livia(rock pigeon (v2 racing homer 2024 genbank))(info)GCA_036013475.2

Pterocliformes

Pteroclidae

Pterocles

•Pterocles gutturalis(yellow-throated sandgrouse (BGI_N339 2014 BGI))(info)GCF_000699245.1

•Tyto alba(barn owl BGI_N341 (2014))(info)GCF_000687205.1

•Tyto alba alba(barn owl (2020))(info)GCF_902150015.1

•Hirundo rustica(barn swallow (bHirRus1 v2 primary hap genbank 2021))(info)GCA_015227805.2

•Hirundo rustica(barn swallow (v2 primary hap 2021 refseq))(info)GCF_015227805.1

•Hirundo rustica(barn swallow (v3 primary hap 2021 genbank))(info)GCA_015227805.3

Sylviidae

Sylviinae

Sylvia

•Sylvia atricapilla(blackcap (primary hap 2019 genbank))(info)GCA_009819655.1

Sylviidae incertae sedis

Chamaea

•Chamaea fasciata(wrentit (frontalis MVZ Bird 193981 primary hap 2023 genbank))(info)GCA_029207755.1

Passeroidea

Icteridae

Molothrus

•Molothrus ater(brown headed cowbird (v1.0 BHLD 08-10-18 2020))(info)GCF_012460135.1

Agelaius

•Agelaius tricolor(tricolored blackbird (1412-34295 primary hap 2022 genbank))(info)GCA_023055355.1

Fringillidae

Carduelinae

Haemorhous

•Haemorhous mexicanus(house finch (primary hap 2022 genbank))(info)GCA_027477595.1

•Taeniopygia guttata(zebra finch (v1 Black17 2019 refseq))(info)GCF_003957565.1

•Taeniopygia guttata(zebra finch (v1 Black17 male 2019 genbank))(info)GCA_003957565.2

•Taeniopygia guttata(zebra finch (v1.4 Blue55 primary hap 2021 genbank))(info)GCA_003957565.4

Corvoidea

Corvidae

Corvus

•Corvus hawaiiensis(Hawaiian crow (2021 genbank))(info)GCA_020740725.1

Corvus cornix

Corvus cornix cornix

•Corvus cornix cornix(hooded crow (v2 S_Up_H32 2017))(info)GCF_000738735.2

•Corvus cornix cornix(hooded crow (v5 S_Up_H32 2021))(info)GCF_000738735.5

Passerellidae

Ammospiza

•Ammospiza nelsoni(Nelson's sparrow (bAmmNel1 primary hap 2023 genbank))(info)GCA_027579445.1

•Ammospiza caudacuta(saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank))(info)GCA_027887145.1

Melospiza

•Melospiza georgiana(swamp sparrow (bMelGeo1 primary hap 2023 genbank))(info)GCA_028018845.1

Acanthisittidae

Acanthisitta

•Acanthisitta chloris(rifleman (BGI 2014))(info)GCF_000695815.1

Turdidae

Catharus

Catharus ustulatus

•Catharus ustulatus(Swainson's thrush (bCatUst1 v1 alternate hap 2019))(info)GCA_009819505.1

•Catharus ustulatus(Swainson's thrush (v1 primary hap 2019))(info)GCF_009819885.1

Pipridae

Pipra

•Pipra filicauda(wire-tailed manakin (2018))(info)GCF_003945595.1

Psittaciformes

Psittaculidae

Melopsittacus

•Melopsittacus undulatus(budgerigar (maternal Z 2020 genbank))(info)GCA_012275295.1

Psittacidae

Strigops

Strigops habroptila

•Strigops habroptila(kakapo (Jane v1 2019))(info)GCF_004027225.1

•Strigops habroptila(kakapo (Jane v2 2020 genbank))(info)GCA_004027225.2

Falconiformes

Falconidae

Falco

•Falco biarmicus(lanner falcon (bFalBia1 primary hap 2022 genbank))(info)GCA_023638135.1

•Falco naumanni(lesser kestrel (v1 2021))(info)GCF_017639655.1

•Falco peregrinus(peregrine falcon (bFalPer1 primary hap 2022 genbank))(info)GCA_023634155.1

•Falco cherrug(Saker falcon (bFalChe1 primary hap 2022 genbank))(info)GCA_023634085.1

Cariamiformes

Cariamidae

Cariama

•Cariama cristata(red-legged seriema (BGI_N322 2014 BGI))(info)GCF_000690535.1

•Gymnogyps californianus(California condor (v1 813 2021 genbank))(info)GCA_018139145.1

Accipitridae

Accipitrinae

Buteo

•Buteo buteo(common buzzard (bButBut1.hap1.1 2024 genbank))(info)GCA_964188355.1

Aquila

Aquila chrysaetos

Aquila chrysaetos chrysaetos

•Aquila chrysaetos chrysaetos(golden eagle (v1.2 2019))(info)GCF_900496995.1

•Aquila chrysaetos chrysaetos(golden eagle (v1.2 alternate hap 2019))(info)GCA_902153765.1

Harpia

•Harpia harpyja(Harpy eagle (primary hap 2022 genbank))(info)GCA_026419915.1

Astur

•Astur gentilis(northern goshawk (v1 primary hap 2022 refseq))(info)GCF_929443795.1

Haliaeetus

•Haliaeetus albicilla(white-tailed eagle (primary hap 2022 genbank))(info)GCA_947461875.1

•Merops nubicus(carmine bee-eater (2014 BGI))(info)GCF_000691845.1

•Dryobates pubescens(downy woodpecker (bDryPub1 primary hap 2020))(info)GCA_014839835.1

•Dryobates pubescens(downy woodpecker (BGI 2014))(info)GCF_000699005.1

•Colius striatus(speckled mousebird (hap1 2023 genbank))(info)GCA_028858725.1

•Colius striatus(speckled mousebird (v1 hap2 2023))(info)GCA_028858625.1

Charadriiformes

Laridae

Rissa

•Rissa tridactyla(black-legged kittiwake (bRisTri1.patW 2023 genbank))(info)GCA_028500815.1

•Cuculus canorus(common cuckoo (bCucCan1 primary hap 2021 genbank))(info)GCA_017976375.1

•Cuculus canorus(common cuckoo (BGI 2014))(info)GCF_000709325.1

Musophagiformes

Musophagidae

Tauraco

•Tauraco erythrolophus(red-crested turaco (2014 BGI))(info)GCF_000709365.1

•Calonectris borealis(Cory's shearwater (hap1.1 2024))(info)GCA_964195595.1

•Calonectris borealis(Cory's shearwater (hap2.1 2024))(info)GCA_964196065.1

Gaviiformes

Gaviidae

Gavia

•Gavia stellata(red-throated loon (hap2 2023 genbank))(info)GCA_030936135.1

Gruiformes

Gruidae

Grus

•Grus americana(whooping crane (maternal hap 2023 genbank))(info)GCA_028858705.1

•Cygnus atratus(black swan (v1 Queensland, Australia AKBS03 2020))(info)GCF_013377495.1

Cygnus olor

•Cygnus olor(mute swan (bCygOlo1 v1 alternate hap 2019))(info)GCA_009769485.1

•Cygnus olor(mute swan (v1 primary hap 2019))(info)GCA_009769625.1

•Coturnix japonica(Japanese quail)(info)GCF_001577835.1

Tetraoninae

Lagopus

•Lagopus muta(rock ptarmigan (primary hap 2022 genbank))(info)GCA_023343835.1

Phasianinae

Gallus

•Gallus gallus(white leghorn X broiler chicken (v1 leghorn haplotype v1 2021))(info)GCF_016700215.1

•Dromaius novaehollandiae(emu (v1 ZJU1.0 2020))(info)GCA_016128335.1

Rheiformes

Rheidae

Rhea

•Rhea pennata(lesser rhea (primary hap 2023 genbank))(info)GCA_028389875.1

•Lepidochelys kempii(Atlantic ridley (rLepKem1 hap2 2025 genbank))(info)GCA_965140265.1

Natator

•Natator depressus(flatback sea turtle (hap1 2025 genbank))(info)GCA_965152275.1

Chelonia

Chelonia mydas

•Chelonia mydas(green sea turtle (BGI 2013))(info)GCF_000344595.1

•Chelonia mydas(green sea turtle (v1 2020))(info)GCF_015237465.1

Dermochelyidae

Dermochelys

Dermochelys coriacea

•Dermochelys coriacea(leatherback sea turtle (v1 2019 genbank G10K))(info)GCA_009764565.1

•Dermochelys coriacea(leatherback sea turtle (v1 alternate hap 2019))(info)GCA_009762595.1

•Dermochelys coriacea(leatherback sea turtle (v3 2020 refseq G10K))(info)GCF_009764565.2

•Malaclemys terrapin pileata(diamondback terrapin (hap1 2023 genbank))(info)GCA_027887155.1

Chrysemys

Chrysemys picta

Chrysemys picta bellii

•Chrysemys picta bellii(western painted turtle (v303 2014))(info)GCF_000241765.3

•Chrysemys picta bellii(western painted turtle (v304 RCT428 2020))(info)GCF_000241765.4

Pleurodira

Chelidae

Myuchelys

•Myuchelys georgesi(Bellinger river turtle (v1 BRST_UC0152H_USYD 2024))(info)GCA_040894355.1

•Xenopus laevis(African clawed frog (2016))(info)GCF_001663975.1

•Pseudophryne corroboree(corroboree frog (hap2 2023 genbank))(info)GCA_028390025.1

•Dendropsophus ebraccatus(hourglass treefrog (paternal 2023 genbank))(info)GCA_027789765.1

Hylini

Hyla

•Hyla sarda(Sardinian treefrog (hap1 2023 genbank))(info)GCA_029499605.1

Eleutherodactylidae

Eleutherodactylinae

Eleutherodactylus

•Eleutherodactylus coqui(Puerto Rican coqui (hap1 2024 genbank))(info)GCA_035609145.1

Leptodactylidae

Leiuperinae

Engystomops

•Engystomops pustulosus(Tungara frog (aEngPut4 maternal hap 2024 genbank))(info)GCA_040894005.1

Bombinatoridae

Bombina

•Bombina bombina(fire-bellied toad (primary hap 2023 genbank))(info)GCA_027579735.1

Gymnophiona

Dermophiidae

Geotrypetes

Geotrypetes seraphini

•Geotrypetes seraphini(Gaboon caecilian (v1.1 2019 genbank))(info)GCA_902459505.1

•Geotrypetes seraphini(Gaboon caecilian (v1.1 2019 refseq))(info)GCF_902459505.1

Siphonopidae

Microcaecilia

•Microcaecilia unicolor(tiny Cayenne caecilian (v1 2019))(info)GCF_901765095.1

Rhinatrematidae

Rhinatrema

•Rhinatrema bivittatum(two-lined caecilian (v1.1 2019 refseq))(info)GCF_901001135.1

•Sebastes fasciatus(Acadian redfish (fSebFas1 primary hap 2024 genbank))(info)GCA_043250625.1

Notothenioidei

Bovichtidae

Cottoperca

•Cottoperca gobio(channel bull blenny (2019 genbank))(info)GCA_900634415.1

Channichthyidae

Pseudochaenichthys

•Pseudochaenichthys georgianus(South Georgia icefish (v1 primary hap 2020))(info)GCF_902827115.1

•Cyclopterus lumpus(lumpfish (primary hap 2019 genbank))(info)GCA_009769545.1

•Sander lucioperca(pike-perch)(info)GCF_008315115.1

Chaetodontiformes

Chaetodontidae

Chaetodon

•Chaetodon trifascialis(chevron butterflyfish (hap1 2024 genbank))(info)GCA_039877785.1

Spariformes

Sparidae

Sparus

•Sparus aurata(gilthead seabream (v1 2019))(info)GCF_900880675.1

Acropomatiformes

Pempheridae

Pempheris

•Pempheris klunzingeri(rough bullseye (RE-2024b hap1 2024 genbank))(info)GCA_042242105.1

•Hippoglossus hippoglossus(Atlantic halibut (primary hap 2019 genbank))(info)GCA_009819705.1

Pleuronectes

•Pleuronectes platessa(European plaice (primary hap 2022 genbank))(info)GCA_947347685.1

Soleidae

Solea

•Solea solea(common sole (primary hap 2023 genbank))(info)GCA_958295425.1

Carangaria incertae sedis

Toxotidae

Toxotes

•Toxotes jaculatrix(banded archerfish (primary hap 2021 genbank))(info)GCA_017976425.1

Centropomidae

Lates

•Lates calcarifer(barramundi perch (ASB-BC8 2016))(info)GCF_001640805.1

Carangiformes

Echeneidae

Echeneis

•Echeneis naucrates(live sharksucker (v1 2019))(info)GCF_900963305.1

Carangidae

Seriola

Seriola lalandi

•Seriola lalandi dorsalis(yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017))(info)GCF_002814215.1

Ovalentaria

Ovalentaria incertae sedis

Embiotocidae

Embiotoca

•Embiotoca jacksoni(black perch (LCO1_2020_lvr primary hap 2022 genbank))(info)GCA_022577435.1

Ambassidae

Parambassis

•Parambassis ranga(Indian glassy fish (v1 2019))(info)GCF_900634625.1

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 genbank))(info)GCA_900634775.1

•Gouania willdenowi(blunt-snouted clingfish (v1 2019 refseq))(info)GCF_900634775.1

•Girardinichthys multiradiatus(dark-edged splitfin (DD_20200921_A 2022 genbank))(info)GCA_021462225.2

Aplocheiloidei

Rivulidae

Kryptolebias

•Kryptolebias marmoratus(mangrove rivulus)(info)GCF_001649575.1

Nematolebias

•Nematolebias whitei(Rio pearlfish (Nwh7 v1 2020))(info)GCF_014905685.1

•Oryzias melastigma(Indian medaka)(info)GCF_002922805.1

•Astatotilapia calliptera(eastern happy (v2 2018))(info)GCF_900246225.1

•Archocentrus centrarchus(flier cichlid (MPI-CPG 2019 genbank))(info)GCA_007364275.2

•Scomber japonicus(chub mackerel (primary hap 2022 genbank))(info)GCA_027409825.1

Thunnini

Thunnus

•Thunnus maccoyii(southern bluefin tuna (primary hap 2021 genbank))(info)GCA_910596095.1

•Anabas testudineus(climbing perch (v1.1 2018 refseq))(info)GCF_900324465.1

•Anabas testudineus(climbing perch (v1.2 2018 genbank))(info)GCA_900324465.2

•Anabas testudineus(climbing perch (v1.2 2018 refseq))(info)GCF_900324465.2

•Betta splendens(Siamese fighting fish (v2 primary hap 2019))(info)GCF_900634795.2

•Betta splendens(Siamese fighting fish (v3 primary hap 2020))(info)GCF_900634795.3

•Mastacembelus armatus(zig-zag eel (v1.1 2018))(info)GCF_900324485.1

•Syngnathus acus(greater pipefish (v1.1 2019))(info)GCA_901709675.1

Nerophis

•Nerophis lumbriciformis(worm pipefish (v1 RoL_2023-P1 2023))(info)GCF_033978685.1

Hippocampinae

Hippocampus

•Hippocampus comes(tiger tail seahorse (QL1 v1 2016))(info)GCF_001891065.1

Periophthalmus magnuspinnatus

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 genbank))(info)GCA_009829125.1

•Periophthalmus magnuspinnatus(Korean giant-fin mudskipper (v1 primary hap 2020 refseq))(info)GCF_009829125.1

Gobionellinae

Eucyclogobius

•Eucyclogobius newberryi(tidewater goby (DKJ021-1_F 2022 genbank))(info)GCA_026437365.1

•Thalassophryne amazonica(prehistoric monster fish (2019 genbank))(info)GCA_902500255.1

•Lampris incognitus(smalleye Pacific opah (hap2 2023 genbank))(info)GCA_029633865.1

•Salmo salar(Atlantic salmon (genbank 2021))(info)GCA_905237065.2

•Salmo trutta(river trout (v1 2019))(info)GCF_901001165.1

Oncorhynchus

•Oncorhynchus tshawytscha(Chinook salmon (v2 Ot180627B 2021 male genbank))(info)GCA_018296145.1

•Oncorhynchus kisutch(coho salmon (150728-3 2017))(info)GCF_002021735.1

•Oncorhynchus nerka(sockeye salmon (On170113-E2 v1 2019))(info)GCF_006149115.1

Esociformes

Esocidae

Esox

•Esox lucius(northern pike (primary hap 2020 genbank))(info)GCA_011004845.1

•Clupea harengus(Atlantic herring (v1))(info)GCF_900700415.1

Denticipitoidei

Denticipitidae

Denticeps

•Denticeps clupeoides(denticle herring (v1 2019))(info)GCF_900700375.1

•Ictalurus punctatus(channel catfish (USDA103 v1 2016))(info)GCF_001660625.1

•Ictalurus punctatus(channel catfish (USDA103 v1.2 2019))(info)GCF_001660625.2

Ariidae

Neoarius

•Neoarius graeffei(lesser salmon catfish (primary hap 2023 genbank))(info)GCA_027579695.1

Pangasiidae

Pangasianodon

•Pangasianodon hypophthalmus(striped catfish (primary hap 2022 genbank))(info)GCA_027358585.1

•Salminus brasiliensis(dorado (hap2 2023 genbank))(info)GCA_030463535.1

Erythrinidae

Hoplias

Hoplias malabaricus

•Hoplias malabaricus(trahira (v1 hap1 2023))(info)GCA_029633855.1

•Hoplias malabaricus(trahira (v1 hap2 2023))(info)GCA_029633875.1

•Electrophorus electricus(electric eel (primary hap 2020 genbank))(info)GCA_013358815.1

•Cyprinus carpio(common carp (2014))(info)GCF_000951615.1

Carassius

•Carassius carassius(crucian carp (primary hap 2023 genbank))(info)GCA_963082965.1

•Conger conger(European conger (primary hap 2023 genbank))(info)GCA_963514075.1

Anguillidae

Anguilla

•Anguilla anguilla(European eel (primary hap 2020 genbank))(info)GCA_013347855.1

•Amia calva(bowfin (hap1 2024 genbank))(info)GCA_036373705.1

•Acipenser ruthenus(sterlet (maternal hap 2022 genbank))(info)GCA_902713425.1

•Acipenser ruthenus(sterlet (maternal hap 2022 genbank))(info)GCA_902713425.2

•Acipenser ruthenus(sterlet (v1 Gen_M01 2020))(info)GCF_010645085.1

•Acipenser ruthenus(sterlet (v1 paternal hap 2020))(info)GCA_902713435.1

•Erpetoichthys calabaricus(reedfish (2019))(info)GCF_900747795.1

•Hypanus sabinus(Atlantic stingray (hap1 2023 genbank))(info)GCA_030144855.1

Myliobatidae

Mobulinae

Mobula

•Mobula birostris(giant manta (hap1 2023 genbank))(info)GCA_030028105.1

Torpediniformes

Narcinidae

Narcine

•Narcine bancroftii(Caribbean electric ray (hap1 2024 genbank))(info)GCA_036971445.1

Rhinopristiformes

Pristidae

Pristis

•Pristis pectinata(smalltooth sawfish (v2 primary hap 2019 genbank))(info)GCA_009764475.1

•Amblyraja radiata(thorny skate (v1 CabotCenter1 v1 2020 refseq))(info)GCF_010909765.1

•Amblyraja radiata(thorny skate (v1 primary hap CabotCenter1 2020 genbank))(info)GCA_010909765.1

•Hemiscyllium ocellatum(epaulette shark (2021 genbank))(info)GCA_020745735.1

Stegostomatidae

Stegostoma

•Stegostoma tigrinum(zebra shark (hap1 2023 genbank))(info)GCA_030684315.1

Carcharhiniformes

Scyliorhinidae

Scyliorhinus

•Scyliorhinus canicula(smaller spotted catshark (v1.1 primary hap 2020 refseq))(info)GCF_902713615.1

•Pristiophorus japonicus(Japanese sawshark (hap1 2024 genbank))(info)GCA_044704955.1

•Callorhinchus milii(elephant shark (2013))(info)GCF_000165045.1

•Petromyzon marinus(sea lamprey (kPetMar1 primary hap 2020))(info)GCA_010993605.1

•Branchiostoma lanceolatum(amphioxus (hap2 2024 genbank))(info)GCA_035083965.1

unclassified Saccoglossus

Saccoglossus sp. HW-2024a

•Saccoglossus sp. HW-2024a(hemichordates Saccoglossus HW-2024a (v1 hap1 2024))(info)GCA_040954625.1

•Saccoglossus sp. HW-2024a(hemichordates Saccoglossus HW-2024a (v1 hap2 2024))(info)GCA_040954595.1

gambiae species complex

Anopheles gambiae

•Anopheles gambiae str. PEST(African malaria mosquito (PEST 2006))(info)GCA_000005575.1

•Aedes albopictus(Asian tiger mosquito (C6/36 2017 genbank))(info)GCA_001876365.2

•Aedes albopictus(Asian tiger mosquito (v1 FPA 2019 genbank)(info)GCA_006496715.1

•Aedes albopictus(Asian tiger mosquito (v1 FPA 2019 refseq))(info)GCF_006496715.1

•Aedes aegypti(yellow fever mosquito (LVP_AGWG 2017 genbank))(info)GCA_002204515.1

Culicini

Culex

Culex pipiens complex

Culex pipiens

•Culex pipiens pallens(northern house mosquito (v1 TS 2021))(info)GCF_016801865.1

•Culex quinquefasciatus(southern house mosquito (JHB 2007 genbank))(info)GCA_000209185.1

•Drosophila albomicans(fly D.albomicans (v1 15112-1751.03 2019))(info)GCF_009650485.1

Sophophora

melanogaster group

melanogaster subgroup

•Drosophila santomea(fly D.santomea (v1.0 2021))(info)GCF_016746245.1

•Drosophila sechellia(fly D.sechellia (sech25 v1 2019 UC Irvine))(info)GCF_004382195.1

•Drosophila simulans(fly D.simulans (w501 v3.0 2021))(info)GCF_016746395.1

Drosophila yakuba

•Drosophila yakuba(fly D.yakuba (2018))(info)GCF_000005975.2

•Drosophila yakuba(fly D.yakuba (v1 2021))(info)GCF_016746365.1

montium subgroup

Drosophila serrata species complex

•Drosophila serrata(fly D.serrata (v1.0 Fors4 2017))(info)GCF_002093755.1

•Zeugodacus cucurbitae(melon fly (v1 USDA-PBARC White Pupae T1 2014))(info)GCF_000806345.1

•Rhagoletis zephyria(snowberry fruit fly (East Lansing v1.0 2016))(info)GCF_001687245.1

•Musca domestica(house fly (aabys 2013 genbank))(info)GCA_000371365.1

Stomoxyini

Stomoxys

•Stomoxys calcitrans(stable fly (8C7A2A5H3J4 2015 genbank))(info)GCA_001015335.1

•Glossina fuscipes(tsetse fly (v1 IAEA_lab_2018 2020))(info)GCF_014805625.1

•Nomia melanderi(alkali bee (v1.2 Touchet_males 2018))(info)GCF_003710045.1

•Ceratina calcarata(bee C.calcarata (v1 Rehan_Ccalc_2016 2016))(info)GCF_001652005.1

Apinae

Euglossini

Eufriesea

•Eufriesea mexicana(bee E.mexicana (v1 0111107269 2016))(info)GCF_001483705.1

•Osmia bicornis bicornis(red mason bee (LIB18336 2019))(info)GCF_004153925.1

•Cyphomyrmex costatus(ant C.costatus (v1 MS0001 2016))(info)GCF_001594065.1

Trachymyrmex

•Trachymyrmex cornetzi(ant T.cornetzi (Tcor2-1 v1.0 2016 BGI))(info)GCF_001594075.1

Formicinae

Lasiini

Nylanderia

•Nylanderia fulva(ant N.fulva (TAMU-Nful-2015 v1.0 2019))(info)GCF_005281655.1

Ponerinae

Ponerini

Harpegnathos

•Harpegnathos saltator(Jerdon's jumping ant (DR-91 v8.5 2018))(info)GCF_003227715.1

•Ceratosolen solmsi marchali(wasp C.solmsi marchali (v1 2013))(info)GCF_000503995.1

Cephoidea

Cephidae

Cephus

•Cephus cinctus(wheat stem sawfly (v1 2014))(info)GCF_000341935.1

•Ostrinia furnacalis(Asian corn borer (v1 ACB-3 2019))(info)GCF_004193835.1

•Ostrinia furnacalis(Asian corn borer (v2 ACB-3 2019))(info)GCF_004193835.2

Pyralidae

Galleriinae

Galleria

•Galleria mellonella(greater wax moth (Carbio01_MB 2019 genbank))(info)GCA_003640425.2

Phycitinae

Plodia

•Plodia interpunctella(Indianmeal moth (v1 USDA-ARS_2022_Savannah primary hap 2023))(info)GCF_027563975.1

•Papilio xuthus(Asian swallowtail (v1 2015))(info)GCF_000836235.1

Lycaenidae

Polyommatinae

Aricia

•Aricia agestis(brown argus (genbank 2021))(info)GCA_905147365.1

Pieridae

Dismorphiinae

Leptidea

•Leptidea sinapis(butterfly L.sinapis (2021 genbank))(info)GCA_905404315.1

Pierinae

Pierini

Pieris

•Pieris napi(butterfly P.napi (v1.1 genbank 2021))(info)GCA_905475465.1

•Pieris rapae(cabbage white (genbank 2021))(info)GCA_905147795.1

•Pieris brassicae(large cabbage white (genbank 2021))(info)GCA_905147105.1

Coliadinae

Colias

•Colias croceus(clouded yellow (genbank 2021))(info)GCA_905220415.1

•Nymphalis io(European peacock (2021 genbank))(info)GCA_905147045.1

Vanessa

•Vanessa cardui(painted lady (genbank 2021))(info)GCA_905220365.1

•Vanessa atalanta(red admiral (genbank 2021))(info)GCA_905147765.2

Melitaeini

Melitaeina

Melitaea

•Melitaea cinxia(Glanville fritillary (genbank 2021))(info)GCA_905220565.1

jurtina species complex

•Maniola jurtina(meadow brown (genbank 2021))(info)GCA_905333055.1

Parargina

Pararge

•Pararge aegeria(speckled wood butterfly (genbank 2021))(info)GCA_905163445.1

•Helicoverpa armigera(cotton bollworm (Harm_GR_Male_#8 2017 genbank))(info)GCA_002156985.1

Amphipyrinae

Spodoptera

Spodoptera frugiperda

•Spodoptera frugiperda(fall armyworm (Faw-zju 2020 genbank))(info)GCA_011064685.1

•Spodoptera frugiperda(fall armyworm (Faw-zju v1.0 refseq 2020))(info)GCF_011064685.1

•Spodoptera litura(moth S.litura (Ishihara v1 2017))(info)GCF_002706865.1

•Bombyx mori(domestic silkworm (genbank 2020))(info)GCA_014905235.2

•Cydia splendana(moth C.splendana (v1 2021 genbank))(info)GCA_910591565.1

•Nilaparvata lugens(brown planthopper (v1 BPH 2020 genbank))(info)GCA_014356525.1

•Nilaparvata lugens(brown planthopper (v1 BPH 2020 refseq))(info)GCF_014356525.1

•Daktulosphaira vitifoliae(grape phylloxera (Bord-2020 2022 genbank))(info)GCA_025091365.1

•Acyrthosiphon pisum(pea aphid (AL4f v1 2019))(info)GCF_005508785.1

Metopolophium

•Metopolophium dirhodum(rose-grain aphid (CAU 2021 genbank))(info)GCA_019925205.1

•Frankliniella occidentalis(western flower thrips (v2 FOCC.00 2017))(info)GCF_000697945.2

•Hyalella azteca(amphipods H.azteca (HAZT.00-mixed v2.0 2016))(info)GCF_000764305.1

•Penaeus monodon(black tiger shrimp (v1 SGIC_2016 2020))(info)GCF_015228065.1

•Macrobrachium nipponense(oriental river prawn (v1 FS-2020 2020 genbank))(info)GCA_015104395.1

•Pollicipes pollicipes(crustacean P.pollicipes (v2 AB1234 2020))(info)GCF_011947565.2

•Lepeophtheirus salmonis(salmon louse (v1.1 2020))(info)GCF_016086655.2

Harpacticoida

Harpacticidae

Tigriopus

•Tigriopus californicus(tidepool copepod (San Diego 2019 genbank))(info)GCA_007210705.1

•Daphnia carinata(crustacean D.carinata (v1 CSIRO-1 2022))(info)GCF_022539665.1

•Daphnia magna(crustacean D.magna (SK Sungkyunkwan U. 2019 genbank))(info)GCA_003990815.1

•Ixodes scapularis(black-legged tick (U.Maryland v1 2021))(info)GCF_016920785.1

•Ixodes scapularis(black-legged tick (Wikel colony 2008 genbank))(info)GCA_000208615.1

Rhipicephalinae

Rhipicephalus

Rhipicephalus sanguineus group

•Rhipicephalus sanguineus(brown dog tick (v1 Rsan-2018 2020))(info)GCF_013339695.1

Boophilus

•Rhipicephalus microplus(southern cattle tick (Rmic-2018 2020 genbank))(info)GCA_013339725.1

Dermacentor

•Dermacentor silvarum(tick D.silvarum (v1 2020))(info)GCF_013339745.1

•Varroa destructor(honeybee mite (v1 2017))(info)GCF_002443255.1

•Varroa jacobsoni(mites & ticks V.jacobsoni (v1 VJ856 2017))(info)GCF_002532875.1

•Galendromus occidentalis(western predatory mite (v1.0 2012))(info)GCF_000255335.1

Parasteatoda tepidariorum

•Parasteatoda tepidariorum(common house spider (v2 Geottingen 2017))(info)GCF_000365465.2

•Parasteatoda tepidariorum(common house spider (v3 Goettingen 2019 genbank))(info)GCA_000365465.3

Eresoidea

Eresidae

Stegodyphus

•Stegodyphus dumicola(velvet spider S.dumicola (v1 Namibia, Etosha 2020))(info)GCF_010614865.1

•Brugia malayi(B.malayi (v3 2008 agent of lymphatic filariasis))(info)GCF_000002995.3

•Caenorhabditis briggsae(nematode C.briggsae (AF16 v1 2008))(info)GCF_000004555.1

Biomphalaria glabrata

•Biomphalaria glabrata(bloodfluke planorb (v1 BB02 2013 refseq))(info)GCF_000457365.1

•Biomphalaria glabrata(bloodfluke planorb (v2 BB02 2013 genbank))(info)GCA_000457365.2

•Patella vulgata(common limpet (v1 primary hap 2022))(info)GCF_932274485.1

•Octopus bimaculoides(California two-spot octopus (v1 UCB-OBI-ISO-001 male 2015))(info)GCF_001194135.1

•Schistosoma haematobium(flatworm S.haematobium (v2 2020))(info)GCF_000699445.2

•Helobdella robusta(segmented worms (v1 2012))(info)GCF_000326865.1

•Exaiptasia diaphana(sea anemones (CC7 2015 genbank))(info)GCA_001417965.1

•Stylophora pistillata(stony coral S.pistillata (v1 CSM Monaco 2017))(info)GCF_002571385.1

•Amphimedon queenslandica(sponges A.queenslandica (v1.0 2010 JGI-PGF))(info)GCF_000090795.1

Aspergillus subgen. Fumigati

Aspergillus fischeri

•Aspergillus fischeri NRRL 181(ascomycetes A.fischeri (v3 NRRL 181 2006))(info)GCF_000149645.2

Aspergillus subgen. Nidulantes

Aspergillus nidulans

•Aspergillus nidulans FGSC A4(ascomycetes A.nidulans (FGSC A4 2012 genbank))(info)GCA_000149205.2

Aspergillus subgen. Circumdati

Aspergillus niger

•Aspergillus niger CBS 513.88(ascomycetes A.niger CBS 513.88 (v3 2007))(info)GCF_000002855.3

Penicillium

Penicillium digitatum

•Penicillium digitatum Pd1(ascomycetes P.digitatum (Pd1 2012 genbank))(info)GCA_000315645.2

Penicillium chrysogenum species complex

Penicillium rubens

•Penicillium rubens Wisconsin 54-1255(ascomycetes P.rubens (Wisconsin 54-1255 2008 genbank))(info)GCA_000226395.1

Trichocomaceae

Rasamsonia

Rasamsonia emersonii

•Rasamsonia emersonii CBS 393.64(ascomycetes R.enersibuu (CBS 393.64 2015 genbank))(info)GCA_000968595.1

Talaromyces

Talaromyces sect. Talaromyces

Talaromyces marneffei

•Talaromyces marneffei ATCC 18224(ascomycetes T.marneffei (ATCC 18224 2008 genbank))(info)GCA_000001985.1

Onygenales

Ajellomycetaceae

Blastomyces

Blastomyces dermatitidis

•Blastomyces dermatitidis ER-3(ascomycetes B.dermatitidis (ER-3 2009 genbank))(info)GCA_000003525.2

Blastomyces gilchristii

•Blastomyces gilchristii SLH14081(ascomycetes B.gilchristii (SLH14081 2009 genbank))(info)GCA_000003855.2

Onygenaceae

Coccidioides

Coccidioides posadasii

•Coccidioides posadasii C735 delta SOWgp(ascomycetes C.posadasii (C735 delta SOWgp 2009 genban))(info)GCA_000151335.1

•Ascochyta rabiei(ascomycetes A.rabiei (Mel4 2019))(info)GCF_004011695.1

•Zymoseptoria tritici IPO323(ascomycetes Z.tritici (IPO323 2011 genbank))(info)GCA_000219625.1

Fusarium oxysporum species complex

Fusarium oxysporum

•Fusarium oxysporum NRRL 32931(ascomycetes F.oxysporum (NRRL 32931 2014 genbank))(info)GCA_000271745.2

•Pyricularia pennisetigena(ascomycetes P.pennisetigena (Br36 2019 genbank))(info)GCA_004337985.1

•Sordaria macrospora k-hell(ascomycetes S.macrospora (v2 k-hell 2012))(info)GCF_000182805.2

•Sporothrix schenckii 1099-18(ascomycetes S.schenckii (1099-18 2015 genbank))(info)GCA_000961545.1

Pseudogymnoascus destructans

•Pseudogymnoascus destructans 20631-21(ascomycetes P.destructans (20631-21 2010 genbank))(info)GCA_000184105.1

•Candidozyma auris(ascomycetes C.auris (B8441 2017))(info)GCA_002759435.2

•Candidozyma auris(budding yeast C.auris (6684 2015 genbank))(info)GCA_001189475.1

•Candidozyma auris(budding yeast C.auris (B11221 2017 genbank))(info)GCA_002775015.1

Clavispora

Clavispora lusitaniae

•Clavispora lusitaniae ATCC 42720(budding yeast C.lusitaniae (ATCC 42720 2009 genbank))(info)GCA_000003835.1

Debaryomycetaceae

Candida/Lodderomyces clade

Candida

•Candida oxycetoniae(budding yeast C.oxycetoniae (v1 CBS 10844 2022))(info)GCF_023343755.1

Lodderomyces

Lodderomyces elongisporus

•Lodderomyces elongisporus NRRL YB-4239(budding yeast L.elongisporus (NRRL YB-4239 2007 genbank))(info)GCA_000149685.1

Kluyveromyces marxianus

•Kluyveromyces marxianus DMKU3-1042(budding yeast K.marxianus (DMKU3-1042 2014 genbank))(info)GCA_001417885.1

Nakaseomyces

•Nakaseomyces glabratus(budding yeast N.glabratus (CBS 138 2008 genbank))(info)GCA_000002545.2

Dipodascomycetes

Dipodascales

Dipodascales incertae sedis

Yarrowia

Yarrowia lipolytica

•Yarrowia lipolytica CLIB122(budding yeast Y.lipolytica (CLIB122 2004 genbank))(info)GCA_000002525.1

Taphrinomycotina

Schizosaccharomycetes

Schizosaccharomycetales

Schizosaccharomycetaceae

Schizosaccharomyces

Schizosaccharomyces pombe

•Schizosaccharomyces pombe(fission yeast (v1 972h- 2007 refseq))(info)GCF_000002945.1

•Schizosaccharomyces pombe(fission yeast (v2 972h- 2019 genbank))(info)GCA_000002945.3

Agaricus bisporus var. bisporus

•Agaricus bisporus var. bisporus H97(basidiomycetes A.bisporus (H97 2012))(info)GCF_000300575.1

Psathyrellaceae

Coprinopsis

Coprinopsis cinerea

•Coprinopsis cinerea okayama7#130(basidiomycetes C.cinerea (okayama7#130 2010 genbank))(info)GCA_000182895.1

Schizophyllineae

Schizophyllaceae

Schizophyllum

Schizophyllum commune

•Schizophyllum commune H4-8(basidiomycetes S.commune (v1 H4-8 2010))(info)GCF_000143185.1

Cryptococcus depauperatus

•Cryptococcus depauperatus CBS 7841(basidiomycetes C.depauperatus (CBS 7841 2024 genbank))(info)GCA_001720195.2

Cryptococcus neoformans species complex

Cryptococcus deneoformans

•Cryptococcus deneoformans JEC21(basidiomycetes C.neoformans (JEC21 2005 genbank))(info)GCA_000091045.1

Kwoniella

Kwoniella bestiolae

Kwoniella bestiolae CBS 10118

•Kwoniella bestiolae CBS 10118(basidiomycetes K.bestiolae (CBS 10118 2024 genbank))(info)GCA_000512585.3

•Kwoniella bestiolae CBS 10118(basidiomycetes K.bestiolae (v1 CBS 10118 2016))(info)GCF_000512585.1

Kwoniella dejecticola

Kwoniella dejecticola CBS 10117

•Kwoniella dejecticola CBS 10117(basidiomycetes K.dejecticola (CBS 10117 2024 genbank))(info)GCA_000512565.3

•Kwoniella dejecticola CBS 10117(basidiomycetes K.dejecticola (v1 CBS 10117 2016))(info)GCF_000512565.1

Kwoniella mangrovensis

Kwoniella mangroviensis CBS 8507

•Kwoniella mangroviensis CBS 8507(basidiomycetes K.mangroviensis (v1 CBS 8507 2016 refseq))(info)GCF_000507465.1

•Kwoniella mangroviensis CBS 8507(basidiomycetes K.mangroviensis (v2 CBS 8507 2024 genbank))(info)GCA_000507465.4

Kwoniella pini

•Kwoniella pini CBS 10737(basidiomycetes K.pini (v1 CBS 10737 2016))(info)GCF_000512605.1

•Kwoniella shandongensis(basidiomycetes K.shandongensis (v1 CBS 12478 2019))(info)GCF_008629635.1

•Malassezia globosa CBS 7966(basidiomycetes M.globosa (v1 CBS 7966 2007))(info)GCF_000181695.1

Fungi incertae sedis

Chytridiomycota

Chytridiomycota incertae sedis

Chytridiomycetes

Rhizophydiales

Rhizophydiales incertae sedis

Batrachochytrium

Batrachochytrium dendrobatidis

•Batrachochytrium dendrobatidis JAM81(chytrid fungus B.dendrobatidis (v1 JAM81 2011))(info)GCF_000203795.1

Enterocytozoon bieneusi

•Enterocytozoon bieneusi H348(microsporidians E.bieneusi (H348 2009 genbank))(info)GCA_000209485.1

Unikaryonidae

Encephalitozoon

Encephalitozoon cuniculi

•Encephalitozoon cuniculi GB-M1(microsporidians E.cuniculi (v1 GB-M1 2002))(info)GCF_000091225.1

Nosematidae

Vairimorpha

Vairimorpha ceranae

•Vairimorpha ceranae BRL01(microsporidians N.ceranae (BRL01 2009 genbank))(info)GCA_000182985.1

unclassified Cryptosporidium

Cryptosporidium genotype names

•Cryptosporidium sp. chipmunk genotype I(apicomplexans C.sp. chipmunk genotype I (37763 2021 genbank))(info)GCA_004936735.2

Eimeriidae

Eimeria

•Eimeria tenella(apicomplexans E.tenella (Houghton 2013))(info)GCA_000499545.1

Plasmodium falciparum

•Plasmodium falciparum 3D7(malaria parasite P. falciparum (3D7 2016 genbank))(info)GCA_000002765.3

{418107}

•Laverania

•Oxytricha trifallax(ciliates Oxytricha trifallax (v1 JRB310 2012))(info)GCA_000295675.1

•Phytophthora cinnamomi(downy mildews (GKB4 2021 genbank))(info)GCA_018691715.1

•Phytophthora ramorum(sudden oak death agent (Pr-102 primary hap 2021 genbank))(info)GCA_020800215.1

•Malus domestica(apple (Golden Delicious X9273 #13 2017 genbank))(info)GCA_002114115.1

Rosoideae

Rosoideae incertae sedis

Rosa

•Rosa chinensis(China rose (Old Blush v1 2018))(info)GCF_002994745.1

•Fragaria vesca subsp. vesca(wild strawberry (2011 genbank))(info)GCA_000184155.1

•Populus trichocarpa(black cottonwood (v3 Nisqually-1 2018))(info)GCF_000002775.4

•Populus euphratica(Euphrates poplar (v1 2014))(info)GCF_000495115.1

•Manihot esculenta(cassava (v6 AM560-2 2016 DOE))(info)GCF_001659605.1

Fagales

Fagaceae

Quercus

•Quercus suber(cork oak (v1 HL8 2018))(info)GCF_002906115.1

•Quercus lobata(valley oak (v3.0 2019))(info)GCF_001633185.1

Fabales

Fabaceae

Papilionoideae

50 kb inversion clade

NPAAA clade

indigoferoid/millettioid clade

Phaseoleae

Vigna

•Vigna unguiculata(cowpea (IT97K-499-35 v1 2019))(info)GCF_004118075.1

Vigna radiata

•Vigna radiata var. radiata(mung bean (VC1973A 2015 genbank))(info)GCA_000741045.2

Cajanus

•Cajanus cajan(pigeon pea (v1 2016 BGI))(info)GCF_000340665.1

Glycine

Glycine subgen. Soja

Glycine max

•Glycine max(soybean (US DOE JGI-PGF v2.0 2010))(info)GCF_000004515.4

•Glycine max(soybean (US DOE JGI-PGF v2.1 2018))(info)GCF_000004515.5

dalbergioids sensu lato

Dalbergieae

Pterocarpus clade

Arachis

•Arachis duranensis(wild peanut A.duranensis (v1 V14167 2017))(info)GCF_000817695.2

•Cucurbita pepo subsp. pepo(vegetable marrow (v1 mu-cu-16 2017))(info)GCF_002806865.1

•Raphanus sativus(radish (v1 WS10039 2015))(info)GCF_000801105.1

Camelineae

Arabidopsis

•Arabidopsis thaliana(thale cress (tair10 Columbia 2011))(info)GCF_000001735.3

•Beta vulgaris subsp. vulgaris(beet (2015))(info)GCF_000511025.2

•Capsicum annuum(capsicum (Zunla-1 2015 genbank))(info)GCA_000710875.1

Solaneae

Solanum

Solanum subgen. Lycopersicon

•Solanum lycopersicum(tomato (v3.0 Heinz 1706 2018))(info)GCF_000188115.4

•Lactuca sativa(eudicots lettuce (Salinas v7 2020))(info)GCF_002870075.2

•Lactuca sativa(lettuce (Salinas v7 2018))(info)GCF_002870075.1

•Lactuca sativa(lettuce (Salinas v8 2020))(info)GCF_002870075.3

Cynara cardunculus subsp. cardunculus

•Cynara cardunculus var. scolymus(globe artichoke (v1 2C 2018))(info)GCF_001531365.1

•Hordeum vulgare subsp. vulgare(domesticated barley (H.vulgare 2021 genbank))(info)GCA_904849725.1

Triticinae

Triticum

•Triticum dicoccoides(wild emmer wheat (Zavitan Atlit2015 v2.0 2019))(info)GCF_002162155.1

•Oryza brachyantha(malo sina (v1 2012))(info)GCF_000231095.1

Nymphaeales

Nymphaeaceae

Nymphaea

•Nymphaea colorata(East African water lily (v1 Beijing-Zhang1983 2019))(info)GCF_008831285.1

Amborellales

Amborellaceae

Amborella

•Amborella trichopoda(New South Wales waratah (AGSP 2013))(info)GCF_000471905.2

Chlamydomonas reinhardtii

•Chlamydomonas reinhardtii(green algae C.reinhardtii (v1 CC-503 cw92 v1 2007))(info)GCF_000002595.1

•Chlamydomonas reinhardtii(green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 genbank))(info)GCA_000002595.3

•Chlorella variabilis(green algae C.variabilis (NC64A 2010 genbank))(info)GCA_000147415.1

•Giardia lamblia ATCC 50803(diplomonads (v1 WB C6 WB C6 2008))(info)GCF_000002435.1

Leishmania donovani species complex

Leishmania infantum

•Leishmania infantum JPCM5(Leishmania infantum (JPCM5 2011 kinetoplastids genbank))(info)GCA_000002875.2

Leishmania major species complex

Leishmania major

•Leishmania major strain Friedlin(Leishmania major (Friedlin 2011 kinetoplastids genbank))(info)GCA_000002725.2

•Leishmania martiniquensis(Leishmania martiniquensis (LSCM1 2021 genbank))(info)GCA_017916325.1

Mundinia

•Leishmania orientalis(Leishmania orientalis (LSCM4 2021 genbank))(info)GCA_017916335.1

Porcisia

•Porcisia hertigi(Porcisia hertigi (C119 2021 genbank))(info)GCA_017918235.1

Trypanosoma

Trypanozoon

•Trypanosoma equiperdum(Trypanosoma equiperdum (OVI 2016 genbank))(info)GCA_001457755.2

Megatrypanum

•Trypanosoma melophagium(Trypanosoma melophagium (St. Kilda St. Kilda 2022 genbank))(info)GCA_022059095.1

Escherichia coli K-12

•Escherichia coli BW25113(E. coli (K-12 BW25113 2014 genbank))(info)GCA_000750555.1

Bacillati

Cyanobacteriota/Melainabacteria group

Cyanobacteriota

Cyanophyceae

Oscillatoriophycideae

Chroococcales

Microcystaceae

Microcystis

Microcystis aeruginosa

•Microcystis aeruginosa PCC 7806(Microcystis aeruginosa (PCC 7806 2024 genbank))(info)GCA_041506625.1

•Betapolyomavirus macacae(Betapolyomavirus macacae (2000))(info)GCA_000837645.1

Roseolovirus humanbeta6a

•Human betaherpesvirus 6A(human betaherpesvirus 6A (U1102 1995 genbank))(info)GCA_000845685.2

Betacoronavirus pandemicum

•Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2 (Jan 2020 COVID-19))(info)GCF_009858895.2